Wall clock time and date at job start Tue Mar 31 2020 21:05:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.35488 * 126.97720 * 2 1 4 4 N 1.30519 * 107.30785 * 180.22742 * 3 2 1 5 5 N 1.28596 * 109.67115 * 359.76967 * 4 3 2 6 6 C 1.30521 * 109.67447 * 0.02562 * 5 4 3 7 7 C 1.50701 * 126.34815 * 179.97438 * 6 5 4 8 8 O 1.42899 * 109.47135 * 90.02342 * 7 6 5 9 9 C 1.42902 * 113.99403 * 179.97438 * 8 7 6 10 10 C 1.50703 * 109.46639 * 180.02562 * 9 8 7 11 11 O 1.21280 * 120.00225 * 359.97438 * 10 9 8 12 12 N 1.34782 * 119.99873 * 180.02562 * 10 9 8 13 13 C 1.46501 * 119.99960 * 180.02562 * 12 10 9 14 14 C 1.52994 * 109.46970 * 179.97438 * 13 12 10 15 15 H 1.09000 * 109.52558 * 304.91361 * 14 13 12 16 16 C 1.53350 * 109.68363 * 184.74873 * 14 13 12 17 17 C 1.53044 * 109.60893 * 178.74575 * 16 14 13 18 18 C 1.53198 * 109.30949 * 61.37664 * 17 16 14 19 19 N 1.46925 * 108.77358 * 305.36214 * 18 17 16 20 20 C 1.36931 * 120.62943 * 233.63033 * 19 18 17 21 21 H 1.08005 * 119.99889 * 151.81888 * 20 19 18 22 22 C 1.38813 * 120.00220 * 331.81086 * 20 19 18 23 23 N 1.31618 * 120.00004 * 343.08678 * 22 20 19 24 24 Si 1.86806 * 119.99953 * 163.08567 * 22 20 19 25 25 H 1.48496 * 109.47191 * 90.00149 * 24 22 20 26 26 H 1.48501 * 109.46981 * 210.00196 * 24 22 20 27 27 H 1.48500 * 109.46794 * 329.99854 * 24 22 20 28 28 C 1.46925 * 118.73856 * 53.61465 * 19 18 17 29 29 H 1.09005 * 109.47119 * 270.15564 * 1 2 3 30 30 H 1.08994 * 109.47739 * 30.15990 * 1 2 3 31 31 H 1.09001 * 109.46858 * 150.16080 * 1 2 3 32 32 H 1.07997 * 126.35287 * 359.97438 * 3 2 1 33 33 H 1.08997 * 109.46978 * 330.02023 * 7 6 5 34 34 H 1.09008 * 109.46707 * 210.02466 * 7 6 5 35 35 H 1.08997 * 109.47605 * 60.00320 * 9 8 7 36 36 H 1.09005 * 109.47524 * 299.99683 * 9 8 7 37 37 H 0.97001 * 119.99811 * 359.97438 * 12 10 9 38 38 H 1.09002 * 109.47400 * 59.99596 * 13 12 10 39 39 H 1.09005 * 109.46741 * 299.99854 * 13 12 10 40 40 H 1.09001 * 109.42012 * 58.71078 * 16 14 13 41 41 H 1.08997 * 109.42600 * 298.78787 * 16 14 13 42 42 H 1.08996 * 109.49900 * 301.42445 * 17 16 14 43 43 H 1.09005 * 109.49524 * 181.32587 * 17 16 14 44 44 H 1.08998 * 109.58305 * 185.58021 * 18 17 16 45 45 H 1.09000 * 109.70493 * 65.22199 * 18 17 16 46 46 H 0.96996 * 119.99787 * 179.97438 * 23 22 20 47 47 H 1.08997 * 109.58983 * 66.17256 * 28 19 18 48 48 H 1.08993 * 109.58892 * 186.45693 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2800 1.0824 0.0000 4 7 3.5090 0.6431 -0.0049 5 7 3.5091 -0.6429 -0.0031 6 6 2.2801 -1.0824 0.0025 7 6 1.8477 -2.5260 0.0057 8 8 1.7163 -2.9809 1.3540 9 6 1.3074 -4.3453 1.4697 10 6 1.2010 -4.7158 2.9266 11 8 1.4511 -3.8927 3.7815 12 7 0.8289 -5.9622 3.2795 13 6 0.7248 -6.3223 4.6958 14 6 0.2873 -7.7831 4.8198 15 1 -0.6390 -7.9342 4.2654 16 6 0.0621 -8.1313 6.2961 17 6 -0.4056 -9.5836 6.4157 18 6 0.6791 -10.5124 5.8609 19 7 1.0042 -10.0941 4.4905 20 6 0.9585 -10.9919 3.4577 21 1 0.7446 -10.6515 2.4553 22 6 1.1873 -12.3397 3.6989 23 7 1.7656 -12.7189 4.8187 24 14 0.6744 -13.6151 2.4340 25 1 1.7930 -13.8499 1.4860 26 1 0.3341 -14.8861 3.1226 27 1 -0.5118 -13.1233 1.6882 28 6 1.3790 -8.6941 4.2494 29 1 -0.3634 0.0028 1.0277 30 1 -0.3634 0.8885 -0.5163 31 1 -0.3633 -0.8914 -0.5113 32 1 1.9702 2.1170 -0.0004 33 1 2.5941 -3.1299 -0.5104 34 1 0.8889 -2.6193 -0.5044 35 1 2.0422 -4.9873 0.9840 36 1 0.3373 -4.4759 0.9902 37 1 0.6292 -6.6206 2.5957 38 1 -0.0108 -5.6806 5.1808 39 1 1.6945 -6.1910 5.1762 40 1 -0.6974 -7.4698 6.7128 41 1 0.9952 -8.0039 6.8450 42 1 -1.3254 -9.7177 5.8465 43 1 -0.5876 -9.8220 7.4637 44 1 0.3119 -11.5387 5.8523 45 1 1.5713 -10.4488 6.4839 46 1 1.9251 -13.6607 4.9874 47 1 2.3276 -8.4797 4.7415 48 1 1.4761 -8.5211 3.1777 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266765107.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:40 Heat of formation + Delta-G solvation = 21.776244 kcal Electronic energy + Delta-G solvation = -28548.027669 eV Core-core repulsion = 24447.499496 eV Total energy + Delta-G solvation = -4100.528173 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -43.48154 -39.89945 -38.24861 -37.55926 -35.46665 -34.84904 -33.06222 -32.06894 -30.68479 -30.46689 -28.73361 -28.10820 -26.67453 -25.36167 -24.85823 -22.78029 -22.16751 -21.42698 -21.07130 -20.56289 -19.12464 -17.87815 -17.50637 -17.16389 -16.75397 -16.62896 -16.38850 -15.59602 -15.46976 -15.13518 -14.91722 -14.82661 -14.18496 -13.92130 -13.89019 -13.65025 -13.46997 -13.28886 -12.86323 -12.75866 -12.40726 -12.31578 -12.22010 -12.12015 -11.84891 -11.33505 -11.06021 -10.75222 -10.74796 -10.61482 -10.55093 -10.28862 -10.23711 -10.22334 -10.01262 -9.90729 -9.70683 -9.56902 -9.46438 -9.00770 -8.51051 -6.71611 -5.83597 -3.26811 1.24631 2.00652 2.39275 2.56383 2.83757 3.32740 3.40124 3.41336 3.58164 4.01911 4.12694 4.16545 4.34268 4.43382 4.49826 4.58853 4.74072 4.77466 4.83642 4.90486 5.05773 5.12409 5.25555 5.38875 5.41656 5.42497 5.57687 5.69876 5.78751 5.89743 5.94994 6.18819 6.27470 6.33013 6.35163 6.40788 6.50260 6.55318 6.66083 6.72569 6.81622 6.91983 7.35830 7.48602 7.63491 7.73485 8.19078 8.35715 8.39847 9.15954 9.79557 10.36595 11.24698 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.018113 B = 0.001905 C = 0.001794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.440550 B =14698.141185 C =15608.135684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.469 5.469 3 C 0.155 3.845 4 N -0.296 5.296 5 N -0.270 5.270 6 C 0.175 3.825 7 C 0.149 3.851 8 O -0.356 6.356 9 C 0.044 3.956 10 C 0.512 3.488 11 O -0.525 6.525 12 N -0.721 5.721 13 C 0.129 3.871 14 C -0.117 4.117 15 H 0.073 0.927 16 C -0.100 4.100 17 C -0.141 4.141 18 C 0.169 3.831 19 N -0.591 5.591 20 C -0.255 4.255 21 H 0.064 0.936 22 C 0.003 3.997 23 N -0.900 5.900 24 Si 0.902 3.098 25 H -0.287 1.287 26 H -0.290 1.290 27 H -0.280 1.280 28 C 0.153 3.847 29 H 0.088 0.912 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.221 0.779 33 H 0.093 0.907 34 H 0.072 0.928 35 H 0.089 0.911 36 H 0.083 0.917 37 H 0.404 0.596 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.047 0.953 41 H 0.057 0.943 42 H 0.054 0.946 43 H 0.050 0.950 44 H 0.086 0.914 45 H 0.018 0.982 46 H 0.254 0.746 47 H 0.019 0.981 48 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.334 21.976 -9.744 25.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.160 5.160 3 C -0.133 4.133 4 N -0.136 5.136 5 N -0.112 5.112 6 C -0.092 4.092 7 C 0.070 3.930 8 O -0.273 6.273 9 C -0.036 4.036 10 C 0.296 3.704 11 O -0.400 6.400 12 N -0.375 5.375 13 C 0.006 3.994 14 C -0.138 4.138 15 H 0.092 0.908 16 C -0.138 4.138 17 C -0.181 4.181 18 C 0.043 3.957 19 N -0.314 5.314 20 C -0.384 4.384 21 H 0.082 0.918 22 C -0.196 4.196 23 N -0.545 5.545 24 Si 0.731 3.269 25 H -0.214 1.214 26 H -0.216 1.216 27 H -0.205 1.205 28 C 0.026 3.974 29 H 0.106 0.894 30 H 0.113 0.887 31 H 0.110 0.890 32 H 0.238 0.762 33 H 0.111 0.889 34 H 0.090 0.910 35 H 0.107 0.893 36 H 0.101 0.899 37 H 0.239 0.761 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.066 0.934 41 H 0.076 0.924 42 H 0.072 0.928 43 H 0.068 0.932 44 H 0.104 0.896 45 H 0.036 0.964 46 H 0.064 0.936 47 H 0.037 0.963 48 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -6.586 22.497 -8.907 25.077 hybrid contribution -1.898 -1.082 -1.089 2.441 sum -8.484 21.415 -9.997 25.110 Atomic orbital electron populations 1.22177 0.74995 1.05196 1.04842 1.46188 1.09452 1.06718 1.53655 1.26513 0.87177 0.94958 1.04607 1.74309 1.18091 1.03097 1.18089 1.74294 1.16885 1.03279 1.16758 1.24271 0.87435 0.91401 1.06098 1.20506 1.01082 0.86054 0.85323 1.88083 1.89365 1.25857 1.24019 1.22287 1.01389 0.84347 0.95608 1.20076 0.77628 0.82508 0.90161 1.90741 1.48039 1.49360 1.51855 1.45943 1.69628 1.12199 1.09688 1.21468 1.01673 0.96009 0.80262 1.22008 1.01257 0.92291 0.98260 0.90847 1.21395 1.00446 0.97312 0.94641 1.22167 1.00914 0.95425 0.99546 1.20798 0.93138 0.97543 0.84229 1.44026 1.78275 1.04156 1.04898 1.19120 1.42125 0.87915 0.89274 0.91804 1.25059 0.98872 0.98230 0.97458 1.70033 1.43296 1.15401 1.25722 0.86319 0.78480 0.81257 0.80818 1.21382 1.21555 1.20529 1.20900 0.93232 0.85672 0.97571 0.89356 0.88703 0.89032 0.76222 0.88925 0.91031 0.89309 0.89892 0.76124 0.91916 0.91418 0.93449 0.92426 0.92756 0.93151 0.89595 0.96398 0.93582 0.96301 0.93173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.20 11.04 59.85 0.66 0.86 16 2 N -0.47 -3.60 3.15 -122.69 -0.39 -3.98 16 3 C 0.15 1.28 12.74 -89.95 -1.15 0.13 16 4 N -0.30 -3.84 12.21 29.68 0.36 -3.48 16 5 N -0.27 -3.79 12.21 32.80 0.40 -3.39 16 6 C 0.18 1.86 7.66 -154.99 -1.19 0.67 16 7 C 0.15 1.19 6.29 36.01 0.23 1.42 16 8 O -0.36 -4.07 9.86 -55.14 -0.54 -4.61 16 9 C 0.04 0.39 6.42 36.01 0.23 0.62 16 10 C 0.51 6.72 7.91 -10.98 -0.09 6.63 16 11 O -0.52 -9.42 16.50 -14.35 -0.24 -9.65 16 12 N -0.72 -8.68 5.33 -60.29 -0.32 -9.00 16 13 C 0.13 1.79 5.08 -4.04 -0.02 1.77 16 14 C -0.12 -1.82 2.39 -90.34 -0.22 -2.04 16 15 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 16 C -0.10 -1.58 5.19 -26.53 -0.14 -1.72 16 17 C -0.14 -2.57 6.08 -26.61 -0.16 -2.73 16 18 C 0.17 3.89 5.30 -3.71 -0.02 3.87 16 19 N -0.59 -14.06 2.99 -172.32 -0.52 -14.58 16 20 C -0.25 -6.66 9.58 -15.06 -0.14 -6.81 16 21 H 0.06 1.61 7.89 -52.48 -0.41 1.20 16 22 C 0.00 0.07 4.92 -17.43 -0.09 -0.01 16 23 N -0.90 -25.58 11.20 55.49 0.62 -24.96 16 24 Si 0.90 20.95 29.59 -169.99 -5.03 15.92 16 25 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 26 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 27 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 28 C 0.15 2.95 5.59 -3.71 -0.02 2.92 16 29 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.09 0.02 8.14 -51.93 -0.42 -0.40 16 31 H 0.09 0.14 7.19 -51.93 -0.37 -0.24 16 32 H 0.22 0.71 8.06 -52.49 -0.42 0.29 16 33 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.30 7.21 -51.92 -0.37 -0.07 16 35 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.40 4.04 7.70 -40.82 -0.31 3.73 16 38 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 39 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 40 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.09 2.23 6.06 -51.93 -0.31 1.92 16 45 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 47 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.05 0.90 7.13 -51.93 -0.37 0.53 16 LS Contribution 394.08 15.07 5.94 5.94 Total: -1.00 -38.01 394.08 -9.46 -47.46 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -7.64 Total: -1.26 kcal Atomic # 6 Polarization: 7.70 SS G_CDS: -2.11 Total: 5.59 kcal Atomic # 7 Polarization: -59.55 SS G_CDS: 0.16 Total: -59.39 kcal Atomic # 8 Polarization: -13.48 SS G_CDS: -0.78 Total: -14.26 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.03 Total: 15.92 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -38.01 -9.46 -47.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266765107.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.241 kcal (2) G-P(sol) polarization free energy of solvation -38.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds