Wall clock time and date at job start Tue Mar 31 2020 21:05:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.35488 * 126.97720 * 2 1 4 4 N 1.30519 * 107.30785 * 180.22742 * 3 2 1 5 5 N 1.28596 * 109.67115 * 359.76967 * 4 3 2 6 6 C 1.30521 * 109.67447 * 0.02562 * 5 4 3 7 7 C 1.50701 * 126.34815 * 179.97438 * 6 5 4 8 8 O 1.42899 * 109.47135 * 90.02342 * 7 6 5 9 9 C 1.42902 * 113.99403 * 179.97438 * 8 7 6 10 10 C 1.50703 * 109.46639 * 180.02562 * 9 8 7 11 11 O 1.21280 * 120.00225 * 359.97438 * 10 9 8 12 12 N 1.34782 * 119.99873 * 180.02562 * 10 9 8 13 13 C 1.46501 * 119.99960 * 180.02562 * 12 10 9 14 14 C 1.52994 * 109.46970 * 179.97438 * 13 12 10 15 15 H 1.09000 * 109.52558 * 304.91361 * 14 13 12 16 16 C 1.53350 * 109.68363 * 184.74873 * 14 13 12 17 17 C 1.53044 * 109.60893 * 178.74575 * 16 14 13 18 18 C 1.53198 * 109.30949 * 61.37664 * 17 16 14 19 19 N 1.46925 * 108.77358 * 305.36214 * 18 17 16 20 20 C 1.36931 * 120.62943 * 233.63033 * 19 18 17 21 21 H 1.08005 * 119.99889 * 151.81888 * 20 19 18 22 22 C 1.38813 * 120.00220 * 331.81086 * 20 19 18 23 23 N 1.31618 * 120.00004 * 343.08678 * 22 20 19 24 24 Si 1.86806 * 119.99953 * 163.08567 * 22 20 19 25 25 H 1.48496 * 109.47191 * 90.00149 * 24 22 20 26 26 H 1.48501 * 109.46981 * 210.00196 * 24 22 20 27 27 H 1.48500 * 109.46794 * 329.99854 * 24 22 20 28 28 C 1.46925 * 118.73856 * 53.61465 * 19 18 17 29 29 H 1.09005 * 109.47119 * 270.15564 * 1 2 3 30 30 H 1.08994 * 109.47739 * 30.15990 * 1 2 3 31 31 H 1.09001 * 109.46858 * 150.16080 * 1 2 3 32 32 H 1.07997 * 126.35287 * 359.97438 * 3 2 1 33 33 H 1.08997 * 109.46978 * 330.02023 * 7 6 5 34 34 H 1.09008 * 109.46707 * 210.02466 * 7 6 5 35 35 H 1.08997 * 109.47605 * 60.00320 * 9 8 7 36 36 H 1.09005 * 109.47524 * 299.99683 * 9 8 7 37 37 H 0.97001 * 119.99811 * 359.97438 * 12 10 9 38 38 H 1.09002 * 109.47400 * 59.99596 * 13 12 10 39 39 H 1.09005 * 109.46741 * 299.99854 * 13 12 10 40 40 H 1.09001 * 109.42012 * 58.71078 * 16 14 13 41 41 H 1.08997 * 109.42600 * 298.78787 * 16 14 13 42 42 H 1.08996 * 109.49900 * 301.42445 * 17 16 14 43 43 H 1.09005 * 109.49524 * 181.32587 * 17 16 14 44 44 H 1.08998 * 109.58305 * 185.58021 * 18 17 16 45 45 H 1.09000 * 109.70493 * 65.22199 * 18 17 16 46 46 H 0.96996 * 119.99787 * 179.97438 * 23 22 20 47 47 H 1.08997 * 109.58983 * 66.17256 * 28 19 18 48 48 H 1.08993 * 109.58892 * 186.45693 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2800 1.0824 0.0000 4 7 3.5090 0.6431 -0.0049 5 7 3.5091 -0.6429 -0.0031 6 6 2.2801 -1.0824 0.0025 7 6 1.8477 -2.5260 0.0057 8 8 1.7163 -2.9809 1.3540 9 6 1.3074 -4.3453 1.4697 10 6 1.2010 -4.7158 2.9266 11 8 1.4511 -3.8927 3.7815 12 7 0.8289 -5.9622 3.2795 13 6 0.7248 -6.3223 4.6958 14 6 0.2873 -7.7831 4.8198 15 1 -0.6390 -7.9342 4.2654 16 6 0.0621 -8.1313 6.2961 17 6 -0.4056 -9.5836 6.4157 18 6 0.6791 -10.5124 5.8609 19 7 1.0042 -10.0941 4.4905 20 6 0.9585 -10.9919 3.4577 21 1 0.7446 -10.6515 2.4553 22 6 1.1873 -12.3397 3.6989 23 7 1.7656 -12.7189 4.8187 24 14 0.6744 -13.6151 2.4340 25 1 1.7930 -13.8499 1.4860 26 1 0.3341 -14.8861 3.1226 27 1 -0.5118 -13.1233 1.6882 28 6 1.3790 -8.6941 4.2494 29 1 -0.3634 0.0028 1.0277 30 1 -0.3634 0.8885 -0.5163 31 1 -0.3633 -0.8914 -0.5113 32 1 1.9702 2.1170 -0.0004 33 1 2.5941 -3.1299 -0.5104 34 1 0.8889 -2.6193 -0.5044 35 1 2.0422 -4.9873 0.9840 36 1 0.3373 -4.4759 0.9902 37 1 0.6292 -6.6206 2.5957 38 1 -0.0108 -5.6806 5.1808 39 1 1.6945 -6.1910 5.1762 40 1 -0.6974 -7.4698 6.7128 41 1 0.9952 -8.0039 6.8450 42 1 -1.3254 -9.7177 5.8465 43 1 -0.5876 -9.8220 7.4637 44 1 0.3119 -11.5387 5.8523 45 1 1.5713 -10.4488 6.4839 46 1 1.9251 -13.6607 4.9874 47 1 2.3276 -8.4797 4.7415 48 1 1.4761 -8.5211 3.1777 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266765107.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:38 Heat of formation + Delta-G solvation = -3.933025 kcal Electronic energy + Delta-G solvation = -28549.142507 eV Core-core repulsion = 24447.499496 eV Total energy + Delta-G solvation = -4101.643010 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -44.14495 -40.91822 -39.45151 -38.61667 -36.23308 -36.01565 -34.66597 -32.78484 -32.28240 -32.04100 -29.58101 -28.51965 -27.44638 -27.19171 -26.03810 -23.80849 -23.41224 -22.55820 -22.05918 -21.61836 -20.59827 -18.75038 -18.48131 -18.15764 -17.80877 -17.42061 -17.13981 -16.79936 -16.44698 -16.31455 -15.97808 -15.85575 -15.54826 -15.22272 -14.99353 -14.59258 -14.48849 -14.30015 -13.99003 -13.76729 -13.73081 -13.60901 -13.11546 -13.00512 -12.97699 -12.85609 -12.58853 -12.47737 -12.25405 -11.96693 -11.80675 -11.56366 -11.44783 -11.33762 -11.15356 -11.08323 -10.87019 -10.84740 -10.51216 -10.44367 -10.08550 -8.65550 -7.84608 -5.30497 0.62293 1.48788 1.50561 1.51406 1.59190 1.59612 1.69691 2.01401 2.53142 2.91001 3.30712 3.45605 3.61148 3.67084 3.79870 3.85586 3.94206 4.00921 4.02661 4.08077 4.18747 4.25583 4.33189 4.40786 4.42321 4.58657 4.59247 4.63002 4.69981 4.78243 4.87799 4.89571 4.92413 5.02237 5.08869 5.12435 5.24197 5.34850 5.39316 5.48398 5.59150 5.68906 5.80145 5.83785 5.92642 6.41143 6.56194 7.16963 7.23566 7.64549 7.88604 8.41094 9.21855 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.018113 B = 0.001905 C = 0.001794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.440550 B =14698.141185 C =15608.135684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.465 5.465 3 C 0.168 3.832 4 N -0.353 5.353 5 N -0.328 5.328 6 C 0.165 3.835 7 C 0.149 3.851 8 O -0.393 6.393 9 C 0.048 3.952 10 C 0.508 3.492 11 O -0.581 6.581 12 N -0.712 5.712 13 C 0.139 3.861 14 C -0.098 4.098 15 H 0.083 0.917 16 C -0.099 4.099 17 C -0.129 4.129 18 C 0.172 3.828 19 N -0.609 5.609 20 C -0.258 4.258 21 H 0.075 0.925 22 C -0.056 4.056 23 N -0.938 5.938 24 Si 0.967 3.033 25 H -0.286 1.286 26 H -0.298 1.298 27 H -0.265 1.265 28 C 0.150 3.850 29 H 0.086 0.914 30 H 0.126 0.874 31 H 0.109 0.891 32 H 0.265 0.735 33 H 0.098 0.902 34 H 0.116 0.884 35 H 0.111 0.889 36 H 0.128 0.872 37 H 0.416 0.584 38 H 0.072 0.928 39 H 0.051 0.949 40 H 0.080 0.920 41 H 0.051 0.949 42 H 0.056 0.944 43 H 0.067 0.933 44 H 0.051 0.949 45 H -0.011 1.011 46 H 0.248 0.752 47 H 0.001 0.999 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.302 23.400 -11.704 28.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.156 5.156 3 C -0.121 4.121 4 N -0.192 5.192 5 N -0.170 5.170 6 C -0.104 4.104 7 C 0.071 3.929 8 O -0.311 6.311 9 C -0.031 4.031 10 C 0.295 3.705 11 O -0.460 6.460 12 N -0.366 5.366 13 C 0.015 3.985 14 C -0.118 4.118 15 H 0.101 0.899 16 C -0.137 4.137 17 C -0.168 4.168 18 C 0.046 3.954 19 N -0.332 5.332 20 C -0.388 4.388 21 H 0.093 0.907 22 C -0.251 4.251 23 N -0.584 5.584 24 Si 0.795 3.205 25 H -0.213 1.213 26 H -0.225 1.225 27 H -0.190 1.190 28 C 0.025 3.975 29 H 0.105 0.895 30 H 0.144 0.856 31 H 0.128 0.872 32 H 0.281 0.719 33 H 0.116 0.884 34 H 0.134 0.866 35 H 0.129 0.871 36 H 0.146 0.854 37 H 0.253 0.747 38 H 0.090 0.910 39 H 0.069 0.931 40 H 0.098 0.902 41 H 0.070 0.930 42 H 0.075 0.925 43 H 0.085 0.915 44 H 0.069 0.931 45 H 0.007 0.993 46 H 0.057 0.943 47 H 0.019 0.981 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.589 23.930 -10.907 27.992 hybrid contribution -0.985 -1.461 -0.465 1.823 sum -10.574 22.468 -11.372 27.312 Atomic orbital electron populations 1.22575 0.72032 1.07741 1.05520 1.46476 1.11087 1.05625 1.52367 1.27339 0.86163 0.96757 1.01807 1.74164 1.21028 1.03191 1.20845 1.74152 1.19501 1.04184 1.19159 1.24761 0.87219 0.93163 1.05303 1.20778 1.03480 0.84507 0.84183 1.88018 1.89942 1.27033 1.26151 1.22407 1.04411 0.83793 0.92495 1.20884 0.76060 0.81810 0.91764 1.90719 1.50560 1.50913 1.53816 1.45851 1.69064 1.12460 1.09228 1.21228 1.00974 0.94775 0.81552 1.21755 0.99938 0.92214 0.97928 0.89878 1.21401 1.01152 0.96142 0.94992 1.21988 0.98862 0.95758 1.00199 1.20627 0.93426 0.97140 0.84172 1.44308 1.78696 1.05604 1.04586 1.19555 1.40490 0.88498 0.90248 0.90745 1.25852 0.99600 1.00288 0.99378 1.70206 1.45284 1.15117 1.27843 0.85287 0.78358 0.78384 0.78466 1.21338 1.22468 1.18972 1.21051 0.93830 0.84097 0.98553 0.89492 0.85605 0.87222 0.71892 0.88404 0.86619 0.87139 0.85406 0.74651 0.90998 0.93094 0.90161 0.93046 0.92515 0.91453 0.93069 0.99253 0.94320 0.98066 0.91912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.14 11.04 127.77 1.41 1.55 16 2 N -0.47 -6.21 3.15 -542.07 -1.71 -7.92 16 3 C 0.17 2.55 12.74 180.11 2.30 4.84 16 4 N -0.35 -9.35 12.21 -60.00 -0.73 -10.08 16 5 N -0.33 -9.48 12.21 -50.15 -0.61 -10.09 16 6 C 0.16 3.35 7.66 137.98 1.06 4.41 16 7 C 0.15 2.03 6.29 71.24 0.45 2.48 16 8 O -0.39 -8.23 9.86 -129.94 -1.28 -9.51 16 9 C 0.05 0.70 6.42 71.24 0.46 1.16 16 10 C 0.51 12.38 7.91 87.66 0.69 13.07 16 11 O -0.58 -20.61 16.50 16.01 0.26 -20.35 16 12 N -0.71 -15.42 5.33 -463.05 -2.47 -17.89 16 13 C 0.14 3.58 5.08 86.38 0.44 4.02 16 14 C -0.10 -2.82 2.39 -10.61 -0.03 -2.85 16 15 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 16 C -0.10 -2.92 5.19 30.73 0.16 -2.76 16 17 C -0.13 -4.54 6.08 30.68 0.19 -4.35 16 18 C 0.17 8.10 5.30 86.36 0.46 8.56 16 19 N -0.61 -28.99 2.99 -699.09 -2.09 -31.08 16 20 C -0.26 -13.40 9.58 84.03 0.81 -12.60 16 21 H 0.07 3.64 7.89 -2.91 -0.02 3.61 16 22 C -0.06 -3.05 4.92 84.86 0.42 -2.63 16 23 N -0.94 -54.99 11.20 21.65 0.24 -54.75 16 24 Si 0.97 43.29 29.59 68.60 2.03 45.32 16 25 H -0.29 -12.69 7.11 99.48 0.71 -11.99 16 26 H -0.30 -13.63 7.11 99.48 0.71 -12.92 16 27 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 28 C 0.15 5.65 5.59 86.36 0.48 6.14 16 29 H 0.09 0.28 8.14 -2.38 -0.02 0.26 16 30 H 0.13 -0.49 8.14 -2.39 -0.02 -0.51 16 31 H 0.11 -0.14 7.19 -2.39 -0.02 -0.15 16 32 H 0.27 0.99 8.06 -2.91 -0.02 0.96 16 33 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.12 0.48 7.21 -2.38 -0.02 0.46 16 35 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.13 0.73 8.14 -2.38 -0.02 0.71 16 37 H 0.42 6.97 7.70 -92.71 -0.71 6.25 16 38 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 40 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 41 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 43 H 0.07 2.12 8.14 -2.38 -0.02 2.11 16 44 H 0.05 2.75 6.06 -2.39 -0.01 2.74 16 45 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 46 H 0.25 14.15 8.31 -92.71 -0.77 13.37 16 47 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 48 H 0.06 2.16 7.13 -2.39 -0.02 2.14 16 Total: -1.00 -89.11 394.08 3.18 -85.93 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: 0.25 Total: 9.38 kcal Atomic # 6 Polarization: 11.76 SS G_CDS: 9.28 Total: 21.04 kcal Atomic # 7 Polarization: -124.44 SS G_CDS: -7.37 Total: -131.81 kcal Atomic # 8 Polarization: -28.85 SS G_CDS: -1.02 Total: -29.86 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -89.11 3.18 -85.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266765107.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.997 kcal (2) G-P(sol) polarization free energy of solvation -89.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds