Wall clock time and date at job start Tue Mar 31 2020 21:03:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.35493 * 126.97994 * 2 1 4 4 N 1.30514 * 107.30831 * 180.22669 * 3 2 1 5 5 N 1.28598 * 109.67282 * 359.77072 * 4 3 2 6 6 C 1.30520 * 109.67372 * 359.97438 * 5 4 3 7 7 C 1.50700 * 126.35022 * 179.97438 * 6 5 4 8 8 O 1.42899 * 109.47140 * 90.02467 * 7 6 5 9 9 C 1.42903 * 113.99629 * 180.02562 * 8 7 6 10 10 C 1.50701 * 109.46878 * 179.97438 * 9 8 7 11 11 O 1.21280 * 119.99781 * 0.02562 * 10 9 8 12 12 N 1.34780 * 119.99795 * 179.97438 * 10 9 8 13 13 C 1.46921 * 120.63059 * 359.72315 * 12 10 9 14 14 C 1.52760 * 109.00903 * 233.58159 * 13 12 10 15 15 C 1.53040 * 109.38219 * 305.58856 * 14 13 12 16 16 C 1.53042 * 109.53627 * 61.23932 * 15 14 13 17 17 H 1.08998 * 109.49938 * 58.59037 * 16 15 14 18 18 C 1.53007 * 109.49782 * 178.68112 * 16 15 14 19 19 N 1.46501 * 109.47045 * 184.84048 * 18 16 15 20 20 C 1.36937 * 119.99910 * 180.02562 * 19 18 16 21 21 H 1.08009 * 119.99550 * 359.97438 * 20 19 18 22 22 C 1.38806 * 120.00244 * 179.97438 * 20 19 18 23 23 N 1.31624 * 119.99908 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00203 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46961 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.47087 * 119.99867 * 24 22 20 27 27 H 1.48493 * 109.47358 * 239.99870 * 24 22 20 28 28 C 1.46926 * 120.62707 * 180.02562 * 12 10 9 29 29 H 1.08995 * 109.46885 * 270.15723 * 1 2 3 30 30 H 1.08998 * 109.47026 * 30.15521 * 1 2 3 31 31 H 1.08994 * 109.46677 * 150.15855 * 1 2 3 32 32 H 1.08006 * 126.34719 * 359.97438 * 3 2 1 33 33 H 1.09007 * 109.46405 * 330.02452 * 7 6 5 34 34 H 1.09004 * 109.47198 * 210.02937 * 7 6 5 35 35 H 1.09002 * 109.47382 * 59.99956 * 9 8 7 36 36 H 1.09001 * 109.46938 * 299.99942 * 9 8 7 37 37 H 1.08996 * 109.58649 * 353.41979 * 13 12 10 38 38 H 1.09004 * 109.58204 * 113.84425 * 13 12 10 39 39 H 1.09000 * 109.56394 * 185.56047 * 14 13 12 40 40 H 1.09001 * 109.38512 * 65.51568 * 14 13 12 41 41 H 1.09001 * 109.46468 * 301.22386 * 15 14 13 42 42 H 1.08996 * 109.45241 * 181.25332 * 15 14 13 43 43 H 1.08995 * 109.47018 * 304.84199 * 18 16 15 44 44 H 1.08999 * 109.46836 * 64.84051 * 18 16 15 45 45 H 0.96994 * 120.00097 * 359.97438 * 19 18 16 46 46 H 0.96999 * 119.99704 * 180.02562 * 23 22 20 47 47 H 1.09005 * 109.58410 * 246.15856 * 28 12 10 48 48 H 1.08998 * 109.58968 * 6.58185 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2801 1.0824 0.0000 4 7 3.5091 0.6430 -0.0049 5 7 3.5091 -0.6429 -0.0031 6 6 2.2801 -1.0824 0.0036 7 6 1.8477 -2.5260 0.0072 8 8 1.7174 -2.9808 1.3555 9 6 1.3097 -4.3456 1.4717 10 6 1.2056 -4.7164 2.9286 11 8 1.4554 -3.8930 3.7833 12 7 0.8338 -5.9629 3.2818 13 6 0.5211 -6.9691 2.2580 14 6 -0.8645 -7.5488 2.5369 15 6 -0.9149 -8.0758 3.9728 16 6 -0.6654 -6.9244 4.9497 17 1 -1.4178 -6.1502 4.7993 18 6 -0.7485 -7.4459 6.3857 19 7 -0.6248 -6.3246 7.3204 20 6 -0.6702 -6.5503 8.6703 21 1 -0.7976 -7.5550 9.0458 22 6 -0.5524 -5.4880 9.5559 23 7 -0.3966 -4.2638 9.0982 24 14 -0.6151 -5.7958 11.3973 25 1 -0.7953 -7.2479 11.6506 26 1 0.6539 -5.3392 12.0190 27 1 -1.7529 -5.0451 11.9863 28 6 0.7273 -6.3392 4.6981 29 1 -0.3633 0.0028 1.0276 30 1 -0.3633 0.8886 -0.5162 31 1 -0.3632 -0.8914 -0.5114 32 1 1.9702 2.1170 -0.0004 33 1 2.5937 -3.1299 -0.5096 34 1 0.8885 -2.6193 -0.5022 35 1 2.0447 -4.9870 0.9855 36 1 0.3394 -4.4769 0.9927 37 1 0.5290 -6.5027 1.2729 38 1 1.2620 -7.7679 2.2924 39 1 -1.0653 -8.3648 1.8427 40 1 -1.6153 -6.7690 2.4090 41 1 -0.1476 -8.8384 4.1070 42 1 -1.8959 -8.5098 4.1660 43 1 -1.7075 -7.9413 6.5374 44 1 0.0592 -8.1564 6.5615 45 1 -0.5100 -5.4225 6.9831 46 1 -0.3140 -3.5215 9.7172 47 1 1.4854 -7.0854 4.9359 48 1 0.8712 -5.4573 5.3223 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266818375.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:49 Heat of formation + Delta-G solvation = 21.222487 kcal Electronic energy + Delta-G solvation = -29071.157613 eV Core-core repulsion = 24970.605427 eV Total energy + Delta-G solvation = -4100.552185 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.40396 -40.26221 -38.39792 -37.23553 -35.38127 -34.95733 -32.97211 -31.99739 -31.72890 -29.99682 -28.74930 -28.04524 -26.68193 -25.53342 -24.73274 -23.15502 -22.70375 -21.47623 -21.33242 -20.27242 -19.09181 -17.88428 -17.42052 -17.14534 -16.79210 -16.69152 -16.32156 -15.58384 -15.48025 -15.11117 -14.80894 -14.69746 -14.51963 -14.02265 -13.82264 -13.66057 -13.54268 -13.27426 -13.11671 -12.96572 -12.68889 -12.43363 -12.28378 -12.20694 -11.78689 -11.54545 -11.14626 -11.02693 -10.84429 -10.68975 -10.67171 -10.52989 -10.39784 -10.32045 -10.19634 -9.95678 -9.72896 -9.61345 -9.51248 -8.84660 -8.54657 -6.87464 -5.69834 -2.99942 1.31812 2.09281 2.44587 2.64652 2.81084 3.47176 3.51929 3.52264 3.55005 4.03058 4.14045 4.21616 4.38753 4.45648 4.55554 4.58630 4.64012 4.73021 4.76730 4.80255 4.89755 4.92961 4.93646 5.17196 5.18352 5.28438 5.33455 5.49857 5.60957 5.63115 5.75226 5.77409 5.78904 5.91681 6.05748 6.09741 6.19372 6.36910 6.41309 6.48658 6.53259 6.68177 6.76494 6.86986 7.42919 7.74818 8.25388 8.42868 8.47674 9.58728 10.16442 10.50417 11.52433 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011199 B = 0.002449 C = 0.002106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2499.707097 B =11430.222267 C =13294.643807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.468 5.468 3 C 0.156 3.844 4 N -0.296 5.296 5 N -0.270 5.270 6 C 0.174 3.826 7 C 0.150 3.850 8 O -0.354 6.354 9 C 0.048 3.952 10 C 0.510 3.490 11 O -0.505 6.505 12 N -0.611 5.611 13 C 0.106 3.894 14 C -0.134 4.134 15 C -0.113 4.113 16 C -0.107 4.107 17 H 0.073 0.927 18 C 0.161 3.839 19 N -0.734 5.734 20 C -0.242 4.242 21 H 0.070 0.930 22 C -0.013 4.013 23 N -0.929 5.929 24 Si 0.906 3.094 25 H -0.281 1.281 26 H -0.291 1.291 27 H -0.292 1.292 28 C 0.122 3.878 29 H 0.090 0.910 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.222 0.778 33 H 0.091 0.909 34 H 0.071 0.929 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.067 0.933 43 H 0.022 0.978 44 H 0.020 0.980 45 H 0.385 0.615 46 H 0.255 0.745 47 H 0.067 0.933 48 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.461 0.129 -27.852 27.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.159 5.159 3 C -0.131 4.131 4 N -0.136 5.136 5 N -0.113 5.113 6 C -0.093 4.093 7 C 0.071 3.929 8 O -0.271 6.271 9 C -0.032 4.032 10 C 0.295 3.705 11 O -0.378 6.378 12 N -0.347 5.347 13 C -0.017 4.017 14 C -0.172 4.172 15 C -0.151 4.151 16 C -0.127 4.127 17 H 0.092 0.908 18 C 0.032 3.968 19 N -0.378 5.378 20 C -0.373 4.373 21 H 0.088 0.912 22 C -0.210 4.210 23 N -0.577 5.577 24 Si 0.737 3.263 25 H -0.206 1.206 26 H -0.219 1.219 27 H -0.219 1.219 28 C 0.001 3.999 29 H 0.108 0.892 30 H 0.113 0.887 31 H 0.109 0.891 32 H 0.238 0.762 33 H 0.109 0.891 34 H 0.089 0.911 35 H 0.102 0.898 36 H 0.099 0.901 37 H 0.095 0.905 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.085 0.915 43 H 0.039 0.961 44 H 0.038 0.962 45 H 0.219 0.781 46 H 0.065 0.935 47 H 0.086 0.914 48 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -0.810 0.632 -27.062 27.081 hybrid contribution -1.662 0.102 0.744 1.824 sum -2.472 0.734 -26.318 26.444 Atomic orbital electron populations 1.22191 0.74928 1.05085 1.05058 1.46185 1.09493 1.06710 1.53532 1.26518 0.87141 0.94980 1.04465 1.74297 1.18104 1.03051 1.18158 1.74272 1.16877 1.03340 1.16818 1.24234 0.87470 0.91379 1.06236 1.20483 1.00866 0.86151 0.85370 1.88131 1.89282 1.25788 1.23905 1.22311 1.00777 0.84246 0.95877 1.20061 0.78131 0.82143 0.90137 1.90829 1.47093 1.48321 1.51567 1.48113 1.68002 1.10470 1.08112 1.21674 0.97320 0.91905 0.90851 1.21845 0.96625 1.00813 0.97961 1.21524 1.02280 0.97864 0.93421 1.21687 0.97007 0.97703 0.96275 0.90818 1.20632 0.97928 0.91566 0.86636 1.42426 1.88223 1.04881 1.02299 1.19240 1.42199 0.93303 0.82582 0.91168 1.24770 1.02861 0.95364 0.97966 1.69689 1.56522 0.98158 1.33328 0.86134 0.77185 0.77168 0.85789 1.20598 1.21855 1.21920 1.21738 0.96656 1.01985 0.79569 0.89161 0.88690 0.89106 0.76194 0.89139 0.91134 0.89837 0.90131 0.90451 0.91043 0.90760 0.91534 0.91658 0.91452 0.96057 0.96230 0.78090 0.93518 0.91438 0.87777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.29 11.04 59.85 0.66 0.95 16 2 N -0.47 -4.14 3.15 -122.69 -0.39 -4.53 16 3 C 0.16 1.47 12.74 -89.95 -1.15 0.32 16 4 N -0.30 -4.13 12.21 29.69 0.36 -3.77 16 5 N -0.27 -4.02 12.21 32.80 0.40 -3.62 16 6 C 0.17 2.01 7.66 -154.99 -1.19 0.82 16 7 C 0.15 1.29 6.29 36.01 0.23 1.51 16 8 O -0.35 -4.48 9.86 -55.14 -0.54 -5.02 16 9 C 0.05 0.47 4.77 36.01 0.17 0.64 16 10 C 0.51 7.71 7.78 -10.98 -0.09 7.62 16 11 O -0.50 -10.76 15.91 -14.35 -0.23 -10.99 16 12 N -0.61 -8.10 2.98 -173.06 -0.52 -8.61 16 13 C 0.11 0.88 6.31 -3.94 -0.02 0.85 16 14 C -0.13 -1.12 6.06 -26.83 -0.16 -1.28 16 15 C -0.11 -1.26 5.17 -26.69 -0.14 -1.40 16 16 C -0.11 -1.69 2.37 -90.52 -0.21 -1.90 16 17 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 18 C 0.16 3.19 5.65 -4.04 -0.02 3.17 16 19 N -0.73 -19.00 5.38 -59.91 -0.32 -19.32 16 20 C -0.24 -6.93 9.99 -15.06 -0.15 -7.08 16 21 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 22 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 23 N -0.93 -29.26 13.06 55.49 0.72 -28.54 16 24 Si 0.91 23.00 29.55 -169.99 -5.02 17.97 16 25 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 26 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 27 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 28 C 0.12 2.02 5.52 -3.73 -0.02 2.00 16 29 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 31 H 0.09 0.23 7.19 -51.93 -0.37 -0.14 16 32 H 0.22 0.99 8.06 -52.48 -0.42 0.56 16 33 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.33 7.21 -51.93 -0.37 -0.04 16 35 H 0.08 0.58 7.95 -51.93 -0.41 0.16 16 36 H 0.08 0.51 7.68 -51.93 -0.40 0.11 16 37 H 0.08 0.41 5.93 -51.93 -0.31 0.10 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 44 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.38 10.71 6.89 -40.82 -0.28 10.43 16 46 H 0.25 7.76 8.31 -40.82 -0.34 7.42 16 47 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 48 H 0.10 2.22 6.20 -51.93 -0.32 1.90 16 LS Contribution 393.45 15.07 5.93 5.93 Total: -1.00 -41.65 393.45 -9.31 -50.96 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -7.51 Total: 3.80 kcal Atomic # 6 Polarization: 7.92 SS G_CDS: -2.19 Total: 5.73 kcal Atomic # 7 Polarization: -68.64 SS G_CDS: 0.26 Total: -68.38 kcal Atomic # 8 Polarization: -15.24 SS G_CDS: -0.77 Total: -16.01 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -5.02 Total: 17.97 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -41.65 -9.31 -50.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266818375.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.179 kcal (2) G-P(sol) polarization free energy of solvation -41.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds