Wall clock time and date at job start Tue Mar 31 2020 21:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.35493 * 126.97994 * 2 1 4 4 N 1.30514 * 107.30831 * 180.22669 * 3 2 1 5 5 N 1.28598 * 109.67282 * 359.77072 * 4 3 2 6 6 C 1.30520 * 109.67372 * 359.97438 * 5 4 3 7 7 C 1.50700 * 126.35022 * 179.97438 * 6 5 4 8 8 O 1.42899 * 109.47140 * 90.02467 * 7 6 5 9 9 C 1.42903 * 113.99629 * 180.02562 * 8 7 6 10 10 C 1.50701 * 109.46878 * 179.97438 * 9 8 7 11 11 O 1.21280 * 119.99781 * 0.02562 * 10 9 8 12 12 N 1.34780 * 119.99795 * 179.97438 * 10 9 8 13 13 C 1.46921 * 120.63059 * 359.72315 * 12 10 9 14 14 C 1.52760 * 109.00903 * 233.58159 * 13 12 10 15 15 C 1.53040 * 109.38219 * 305.58856 * 14 13 12 16 16 C 1.53042 * 109.53627 * 61.23932 * 15 14 13 17 17 H 1.08998 * 109.49938 * 58.59037 * 16 15 14 18 18 C 1.53007 * 109.49782 * 178.68112 * 16 15 14 19 19 N 1.46501 * 109.47045 * 184.84048 * 18 16 15 20 20 C 1.36937 * 119.99910 * 180.02562 * 19 18 16 21 21 H 1.08009 * 119.99550 * 359.97438 * 20 19 18 22 22 C 1.38806 * 120.00244 * 179.97438 * 20 19 18 23 23 N 1.31624 * 119.99908 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00203 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46961 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.47087 * 119.99867 * 24 22 20 27 27 H 1.48493 * 109.47358 * 239.99870 * 24 22 20 28 28 C 1.46926 * 120.62707 * 180.02562 * 12 10 9 29 29 H 1.08995 * 109.46885 * 270.15723 * 1 2 3 30 30 H 1.08998 * 109.47026 * 30.15521 * 1 2 3 31 31 H 1.08994 * 109.46677 * 150.15855 * 1 2 3 32 32 H 1.08006 * 126.34719 * 359.97438 * 3 2 1 33 33 H 1.09007 * 109.46405 * 330.02452 * 7 6 5 34 34 H 1.09004 * 109.47198 * 210.02937 * 7 6 5 35 35 H 1.09002 * 109.47382 * 59.99956 * 9 8 7 36 36 H 1.09001 * 109.46938 * 299.99942 * 9 8 7 37 37 H 1.08996 * 109.58649 * 353.41979 * 13 12 10 38 38 H 1.09004 * 109.58204 * 113.84425 * 13 12 10 39 39 H 1.09000 * 109.56394 * 185.56047 * 14 13 12 40 40 H 1.09001 * 109.38512 * 65.51568 * 14 13 12 41 41 H 1.09001 * 109.46468 * 301.22386 * 15 14 13 42 42 H 1.08996 * 109.45241 * 181.25332 * 15 14 13 43 43 H 1.08995 * 109.47018 * 304.84199 * 18 16 15 44 44 H 1.08999 * 109.46836 * 64.84051 * 18 16 15 45 45 H 0.96994 * 120.00097 * 359.97438 * 19 18 16 46 46 H 0.96999 * 119.99704 * 180.02562 * 23 22 20 47 47 H 1.09005 * 109.58410 * 246.15856 * 28 12 10 48 48 H 1.08998 * 109.58968 * 6.58185 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2801 1.0824 0.0000 4 7 3.5091 0.6430 -0.0049 5 7 3.5091 -0.6429 -0.0031 6 6 2.2801 -1.0824 0.0036 7 6 1.8477 -2.5260 0.0072 8 8 1.7174 -2.9808 1.3555 9 6 1.3097 -4.3456 1.4717 10 6 1.2056 -4.7164 2.9286 11 8 1.4554 -3.8930 3.7833 12 7 0.8338 -5.9629 3.2818 13 6 0.5211 -6.9691 2.2580 14 6 -0.8645 -7.5488 2.5369 15 6 -0.9149 -8.0758 3.9728 16 6 -0.6654 -6.9244 4.9497 17 1 -1.4178 -6.1502 4.7993 18 6 -0.7485 -7.4459 6.3857 19 7 -0.6248 -6.3246 7.3204 20 6 -0.6702 -6.5503 8.6703 21 1 -0.7976 -7.5550 9.0458 22 6 -0.5524 -5.4880 9.5559 23 7 -0.3966 -4.2638 9.0982 24 14 -0.6151 -5.7958 11.3973 25 1 -0.7953 -7.2479 11.6506 26 1 0.6539 -5.3392 12.0190 27 1 -1.7529 -5.0451 11.9863 28 6 0.7273 -6.3392 4.6981 29 1 -0.3633 0.0028 1.0276 30 1 -0.3633 0.8886 -0.5162 31 1 -0.3632 -0.8914 -0.5114 32 1 1.9702 2.1170 -0.0004 33 1 2.5937 -3.1299 -0.5096 34 1 0.8885 -2.6193 -0.5022 35 1 2.0447 -4.9870 0.9855 36 1 0.3394 -4.4769 0.9927 37 1 0.5290 -6.5027 1.2729 38 1 1.2620 -7.7679 2.2924 39 1 -1.0653 -8.3648 1.8427 40 1 -1.6153 -6.7690 2.4090 41 1 -0.1476 -8.8384 4.1070 42 1 -1.8959 -8.5098 4.1660 43 1 -1.7075 -7.9413 6.5374 44 1 0.0592 -8.1564 6.5615 45 1 -0.5100 -5.4225 6.9831 46 1 -0.3140 -3.5215 9.7172 47 1 1.4854 -7.0854 4.9359 48 1 0.8712 -5.4573 5.3223 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266818375.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:47 Heat of formation + Delta-G solvation = -9.008917 kcal Electronic energy + Delta-G solvation = -29072.468545 eV Core-core repulsion = 24970.605427 eV Total energy + Delta-G solvation = -4101.863117 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -44.15550 -41.33834 -39.31613 -38.35459 -36.63115 -36.03565 -34.51651 -33.08389 -32.74985 -31.60671 -29.71166 -28.55813 -27.53343 -26.99641 -25.79800 -24.84315 -23.43079 -22.67525 -22.05598 -21.55766 -20.09000 -19.19694 -18.64146 -18.10851 -17.77618 -17.42588 -17.17128 -16.73080 -16.50580 -16.33288 -16.00447 -15.72275 -15.39598 -15.37066 -15.27880 -14.79526 -14.32930 -14.24131 -14.09484 -14.04594 -13.74738 -13.62598 -13.19294 -13.05057 -13.01218 -12.88009 -12.69107 -12.58338 -12.14153 -12.02747 -11.94032 -11.81887 -11.53632 -11.46954 -11.30398 -11.17414 -10.99626 -10.86003 -10.79303 -10.44827 -9.65714 -9.03426 -7.96838 -5.27526 0.60463 1.43262 1.45741 1.50169 1.55607 1.55793 1.65565 1.88844 2.53508 2.80900 3.32495 3.36368 3.57260 3.69073 3.74223 3.83615 3.90185 3.92165 3.92944 4.09283 4.15102 4.18581 4.21019 4.27497 4.35657 4.38021 4.47706 4.56960 4.65755 4.67774 4.77172 4.84916 4.86707 4.92352 4.93745 5.04034 5.07707 5.15606 5.25784 5.35865 5.46065 5.50225 5.54116 5.84014 5.93080 6.23788 6.42977 7.17434 7.29052 7.62711 8.06184 8.27548 9.26852 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011199 B = 0.002449 C = 0.002106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2499.707097 B =11430.222267 C =13294.643807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.466 5.466 3 C 0.166 3.834 4 N -0.352 5.352 5 N -0.326 5.326 6 C 0.164 3.836 7 C 0.149 3.851 8 O -0.400 6.400 9 C 0.057 3.943 10 C 0.495 3.505 11 O -0.588 6.588 12 N -0.605 5.605 13 C 0.096 3.904 14 C -0.127 4.127 15 C -0.108 4.108 16 C -0.093 4.093 17 H 0.052 0.948 18 C 0.156 3.844 19 N -0.750 5.750 20 C -0.244 4.244 21 H 0.081 0.919 22 C -0.083 4.083 23 N -0.973 5.973 24 Si 0.978 3.022 25 H -0.260 1.260 26 H -0.296 1.296 27 H -0.292 1.292 28 C 0.128 3.872 29 H 0.080 0.920 30 H 0.127 0.873 31 H 0.113 0.887 32 H 0.264 0.736 33 H 0.105 0.895 34 H 0.118 0.882 35 H 0.122 0.878 36 H 0.129 0.871 37 H 0.121 0.879 38 H 0.089 0.911 39 H 0.115 0.885 40 H 0.063 0.937 41 H 0.077 0.923 42 H 0.075 0.925 43 H 0.029 0.971 44 H 0.025 0.975 45 H 0.370 0.630 46 H 0.249 0.751 47 H 0.069 0.931 48 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.402 -2.348 -30.968 31.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.157 5.157 3 C -0.122 4.122 4 N -0.191 5.191 5 N -0.169 5.169 6 C -0.106 4.106 7 C 0.071 3.929 8 O -0.319 6.319 9 C -0.022 4.022 10 C 0.284 3.716 11 O -0.467 6.467 12 N -0.339 5.339 13 C -0.025 4.025 14 C -0.165 4.165 15 C -0.146 4.146 16 C -0.113 4.113 17 H 0.070 0.930 18 C 0.029 3.971 19 N -0.392 5.392 20 C -0.376 4.376 21 H 0.099 0.901 22 C -0.274 4.274 23 N -0.624 5.624 24 Si 0.806 3.194 25 H -0.184 1.184 26 H -0.223 1.223 27 H -0.219 1.219 28 C 0.005 3.995 29 H 0.098 0.902 30 H 0.145 0.855 31 H 0.131 0.869 32 H 0.280 0.720 33 H 0.123 0.877 34 H 0.135 0.865 35 H 0.139 0.861 36 H 0.146 0.854 37 H 0.139 0.861 38 H 0.108 0.892 39 H 0.133 0.867 40 H 0.081 0.919 41 H 0.095 0.905 42 H 0.093 0.907 43 H 0.046 0.954 44 H 0.043 0.957 45 H 0.201 0.799 46 H 0.058 0.942 47 H 0.087 0.913 48 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -2.790 -1.954 -30.244 30.436 hybrid contribution -1.111 0.820 1.674 2.170 sum -3.901 -1.134 -28.571 28.858 Atomic orbital electron populations 1.22564 0.72132 1.07913 1.05253 1.46483 1.11070 1.05759 1.52358 1.27324 0.86220 0.96770 1.01905 1.74152 1.20912 1.03258 1.20803 1.74129 1.19432 1.04125 1.19166 1.24842 0.87203 0.93298 1.05217 1.20824 1.03673 0.84411 0.83948 1.88067 1.89943 1.27312 1.26540 1.22448 1.04360 0.83796 0.91570 1.21271 0.76433 0.81615 0.92252 1.90794 1.50858 1.50792 1.54282 1.48222 1.66881 1.11292 1.07540 1.22174 0.97810 0.91428 0.91048 1.21856 0.96414 1.01973 0.96289 1.21531 1.03075 0.95893 0.94105 1.21532 0.95680 0.98960 0.95078 0.92987 1.20882 0.98045 0.90016 0.88138 1.42713 1.88131 1.05793 1.02592 1.19725 1.40213 0.93611 0.84014 0.90127 1.25695 1.03665 0.95161 1.02909 1.69888 1.58751 0.99120 1.34675 0.85008 0.76579 0.77972 0.79808 1.18426 1.22329 1.21925 1.21340 0.97308 0.99288 0.81610 0.90151 0.85478 0.86856 0.72041 0.87683 0.86484 0.86060 0.85367 0.86058 0.89244 0.86680 0.91857 0.90481 0.90671 0.95355 0.95660 0.79897 0.94188 0.91250 0.93837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.36 11.04 127.77 1.41 1.77 16 2 N -0.47 -7.65 3.15 -542.07 -1.71 -9.36 16 3 C 0.17 3.03 12.74 180.11 2.30 5.33 16 4 N -0.35 -10.19 12.21 -59.99 -0.73 -10.93 16 5 N -0.33 -10.07 12.21 -50.15 -0.61 -10.68 16 6 C 0.16 3.68 7.66 137.98 1.06 4.74 16 7 C 0.15 2.20 6.29 71.24 0.45 2.64 16 8 O -0.40 -9.65 9.86 -129.94 -1.28 -10.93 16 9 C 0.06 0.94 4.77 71.24 0.34 1.28 16 10 C 0.50 15.02 7.78 87.66 0.68 15.70 16 11 O -0.59 -27.07 15.91 16.01 0.25 -26.82 16 12 N -0.61 -15.46 2.98 -819.83 -2.44 -17.90 16 13 C 0.10 1.15 6.31 86.22 0.54 1.69 16 14 C -0.13 -1.51 6.06 30.53 0.19 -1.32 16 15 C -0.11 -2.10 5.17 30.62 0.16 -1.94 16 16 C -0.09 -2.94 2.37 -10.73 -0.03 -2.96 16 17 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 18 C 0.16 6.28 5.65 86.38 0.49 6.76 16 19 N -0.75 -40.54 5.38 -343.44 -1.85 -42.38 16 20 C -0.24 -14.28 9.99 84.03 0.84 -13.44 16 21 H 0.08 4.45 7.83 -2.91 -0.02 4.43 16 22 C -0.08 -5.02 5.50 84.86 0.47 -4.56 16 23 N -0.97 -64.26 13.06 21.65 0.28 -63.98 16 24 Si 0.98 48.38 29.55 68.60 2.03 50.41 16 25 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 26 H -0.30 -14.74 7.11 99.48 0.71 -14.04 16 27 H -0.29 -14.35 7.11 99.48 0.71 -13.64 16 28 C 0.13 4.42 5.52 86.35 0.48 4.89 16 29 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.13 -0.10 8.14 -2.39 -0.02 -0.11 16 31 H 0.11 0.14 7.19 -2.39 -0.02 0.12 16 32 H 0.26 1.86 8.06 -2.91 -0.02 1.83 16 33 H 0.11 1.17 8.14 -2.38 -0.02 1.15 16 34 H 0.12 0.55 7.21 -2.38 -0.02 0.53 16 35 H 0.12 1.08 7.95 -2.39 -0.02 1.06 16 36 H 0.13 0.88 7.68 -2.39 -0.02 0.86 16 37 H 0.12 0.46 5.93 -2.39 -0.01 0.44 16 38 H 0.09 0.85 8.14 -2.38 -0.02 0.83 16 39 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 40 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.08 1.35 8.14 -2.39 -0.02 1.34 16 42 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 44 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 45 H 0.37 22.06 6.89 -92.71 -0.64 21.42 16 46 H 0.25 15.94 8.31 -92.71 -0.77 15.17 16 47 H 0.07 2.30 8.14 -2.38 -0.02 2.28 16 48 H 0.04 2.05 6.20 -2.39 -0.01 2.03 16 Total: -1.00 -103.73 393.45 3.64 -100.09 By element: Atomic # 1 Polarization: 21.56 SS G_CDS: 0.33 Total: 21.89 kcal Atomic # 6 Polarization: 11.21 SS G_CDS: 9.37 Total: 20.58 kcal Atomic # 7 Polarization: -148.17 SS G_CDS: -7.06 Total: -155.23 kcal Atomic # 8 Polarization: -36.72 SS G_CDS: -1.03 Total: -37.74 kcal Atomic # 14 Polarization: 48.38 SS G_CDS: 2.03 Total: 50.41 kcal Total: -103.73 3.64 -100.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266818375.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.082 kcal (2) G-P(sol) polarization free energy of solvation -103.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds