Wall clock time and date at job start Tue Mar 31 2020 20:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46495 * 109.47096 * 2 1 4 4 C 1.46501 * 119.99945 * 269.99766 * 3 2 1 5 5 C 1.50703 * 109.47485 * 270.00108 * 4 3 2 6 6 H 1.08002 * 119.99690 * 0.02562 * 5 4 3 7 7 C 1.37872 * 120.00317 * 180.02562 * 5 4 3 8 8 N 1.31521 * 119.99870 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00215 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.46818 * 89.99478 * 9 7 5 11 11 H 1.48498 * 109.47030 * 209.99731 * 9 7 5 12 12 H 1.48496 * 109.46811 * 329.99810 * 9 7 5 13 13 C 1.34775 * 120.00257 * 89.99974 * 3 2 1 14 14 O 1.21277 * 120.00231 * 180.02562 * 13 3 2 15 15 C 1.50698 * 120.00182 * 0.02562 * 13 3 2 16 16 N 1.46896 * 109.47670 * 179.97438 * 15 13 3 17 17 C 1.46901 * 111.00173 * 180.02562 * 16 15 13 18 18 C 1.53001 * 109.46839 * 180.02562 * 17 16 15 19 19 N 1.46497 * 109.46986 * 179.97438 * 18 17 16 20 20 C 1.46507 * 120.00309 * 89.99303 * 19 18 17 21 21 C 1.34783 * 120.00158 * 269.72292 * 19 18 17 22 22 O 1.21577 * 119.99512 * 5.36465 * 21 19 18 23 23 C 1.47709 * 120.00029 * 185.36311 * 21 19 18 24 24 C 1.41501 * 126.51430 * 185.95994 * 23 21 19 25 25 C 1.35366 * 105.50178 * 179.90179 * 24 23 21 26 26 N 1.35033 * 107.22891 * 0.35910 * 25 24 23 27 27 H 0.96997 * 124.88473 * 179.76176 * 26 25 24 28 28 N 1.28476 * 110.22834 * 359.76197 * 26 25 24 29 29 H 1.09002 * 109.47265 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47314 * 299.99921 * 1 2 3 31 31 H 1.09003 * 109.47424 * 60.00063 * 1 2 3 32 32 H 1.09002 * 109.47405 * 239.99567 * 2 1 3 33 33 H 1.09003 * 109.47424 * 119.99937 * 2 1 3 34 34 H 1.08999 * 109.47329 * 29.99975 * 4 3 2 35 35 H 1.09001 * 109.47504 * 150.00011 * 4 3 2 36 36 H 0.96999 * 119.99896 * 180.02562 * 8 7 5 37 37 H 1.09003 * 109.47044 * 59.99542 * 15 13 3 38 38 H 1.09004 * 109.46938 * 300.00199 * 15 13 3 39 39 H 1.00897 * 111.00245 * 303.95636 * 16 15 13 40 40 H 1.08991 * 109.47343 * 59.99826 * 17 16 15 41 41 H 1.09006 * 109.46837 * 299.99512 * 17 16 15 42 42 H 1.08998 * 109.47442 * 60.00009 * 18 17 16 43 43 H 1.08997 * 109.46854 * 299.99370 * 18 17 16 44 44 H 1.09007 * 109.46562 * 95.36103 * 20 19 18 45 45 H 1.08998 * 109.47280 * 215.35653 * 20 19 18 46 46 H 1.08998 * 109.47095 * 335.36526 * 20 19 18 47 47 H 1.08003 * 127.25323 * 0.02562 * 24 23 21 48 48 H 1.07998 * 126.38228 * 180.15547 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6857 1.8350 -1.7038 6 1 4.3426 1.2302 -1.0962 7 6 4.1494 2.3904 -2.8775 8 7 3.3493 3.1265 -3.6176 9 14 5.9134 2.0963 -3.4171 10 1 5.9760 0.8757 -4.2606 11 1 6.3929 3.2639 -4.1994 12 1 6.7735 1.9154 -2.2201 13 6 2.2429 2.0166 1.1672 14 8 2.6467 3.1601 1.1672 15 6 1.9923 1.3061 2.4723 16 7 2.3109 2.2059 3.5888 17 6 2.0786 1.5452 4.8802 18 6 2.4201 2.5117 6.0161 19 7 2.1879 1.8531 7.3039 20 6 3.2681 1.1012 7.9476 21 6 0.9821 1.9434 7.8993 22 8 0.0595 2.4875 7.3242 23 6 0.7816 1.3814 9.2506 24 6 -0.4438 1.2936 9.9527 25 6 -0.1414 0.7116 11.1368 26 7 1.1883 0.4760 11.1387 27 1 1.6782 0.0671 11.8692 28 7 1.7110 0.8716 10.0338 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.5817 1.6876 -2.0284 35 1 2.0955 3.1410 -1.1385 36 1 3.6754 3.5170 -4.4435 37 1 2.6228 0.4188 2.5298 38 1 0.9444 1.0115 2.5302 39 1 3.2592 2.5440 3.5215 40 1 2.7097 0.6597 4.9540 41 1 1.0313 1.2524 4.9553 42 1 1.7887 3.3970 5.9422 43 1 3.4673 2.8048 5.9412 44 1 3.7772 1.7415 8.6681 45 1 2.8516 0.2351 8.4619 46 1 3.9792 0.7678 7.1918 47 1 -1.4160 1.6202 9.6143 48 1 -0.8339 0.4817 11.9330 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267347964.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:28 Heat of formation + Delta-G solvation = 25.350736 kcal Electronic energy + Delta-G solvation = -28509.878680 eV Core-core repulsion = 24409.505509 eV Total energy + Delta-G solvation = -4100.373171 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.06967 -39.81089 -39.02989 -36.51978 -35.36080 -34.86071 -32.76708 -32.36451 -31.27171 -30.10154 -29.81219 -27.58488 -26.86562 -25.58907 -23.82224 -22.95173 -22.40277 -22.04103 -21.83301 -19.59490 -18.73834 -18.30654 -17.23480 -16.63055 -16.40082 -16.34653 -16.15847 -15.83494 -15.40174 -15.03883 -14.46775 -14.27657 -14.13008 -14.02709 -13.68312 -13.46961 -13.25537 -13.21647 -13.10846 -13.03998 -12.62838 -12.37727 -12.05657 -11.92245 -11.80733 -11.40739 -11.20817 -11.13252 -11.09554 -10.86753 -10.68280 -10.48240 -10.32482 -10.09002 -9.85467 -9.64722 -9.58681 -8.99316 -8.77362 -8.39665 -8.26654 -7.58343 -6.00100 -4.04766 1.19338 1.72063 2.35256 2.75758 3.12129 3.31858 3.38455 3.42028 3.53112 3.85068 3.99832 4.39114 4.44805 4.53493 4.62163 4.90219 4.99185 5.03860 5.16704 5.20930 5.30016 5.33662 5.33884 5.34649 5.38518 5.54901 5.58667 5.58866 5.72580 5.77734 5.86858 5.92291 5.94012 6.08977 6.27379 6.28872 6.49789 6.54958 6.91206 7.07948 7.18814 7.37581 7.46898 7.52815 7.62554 7.94035 7.96903 8.28704 8.51018 8.95359 9.19261 9.60146 11.07860 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.022783 B = 0.001855 C = 0.001790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.716302 B =15088.245765 C =15636.843749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.107 3.893 3 N -0.599 5.599 4 C 0.247 3.753 5 C -0.525 4.525 6 H 0.056 0.944 7 C 0.060 3.940 8 N -0.894 5.894 9 Si 0.898 3.102 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.275 1.275 13 C 0.505 3.495 14 O -0.528 6.528 15 C 0.044 3.956 16 N -0.669 5.669 17 C 0.048 3.952 18 C 0.118 3.882 19 N -0.604 5.604 20 C 0.084 3.916 21 C 0.598 3.402 22 O -0.522 6.522 23 C -0.010 4.010 24 C -0.179 4.179 25 C -0.015 4.015 26 N -0.387 5.387 27 H 0.446 0.554 28 N -0.256 5.256 29 H 0.058 0.942 30 H 0.051 0.949 31 H 0.061 0.939 32 H 0.081 0.919 33 H 0.062 0.938 34 H 0.031 0.969 35 H 0.044 0.956 36 H 0.263 0.737 37 H 0.052 0.948 38 H 0.095 0.905 39 H 0.351 0.649 40 H 0.028 0.972 41 H 0.077 0.923 42 H 0.097 0.903 43 H 0.080 0.920 44 H 0.059 0.941 45 H 0.082 0.918 46 H 0.068 0.932 47 H 0.164 0.836 48 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.015 -10.898 31.151 33.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.017 4.017 3 N -0.332 5.332 4 C 0.128 3.872 5 C -0.564 4.564 6 H 0.074 0.926 7 C -0.142 4.142 8 N -0.533 5.533 9 Si 0.726 3.274 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.200 1.200 13 C 0.290 3.710 14 O -0.404 6.404 15 C -0.088 4.088 16 N -0.302 5.302 17 C -0.083 4.083 18 C -0.005 4.005 19 N -0.337 5.337 20 C -0.060 4.060 21 C 0.384 3.616 22 O -0.396 6.396 23 C -0.171 4.171 24 C -0.207 4.207 25 C -0.159 4.159 26 N -0.101 5.101 27 H 0.290 0.710 28 N -0.094 5.094 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.100 0.900 33 H 0.080 0.920 34 H 0.049 0.951 35 H 0.062 0.938 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.113 0.887 39 H 0.170 0.830 40 H 0.046 0.954 41 H 0.095 0.905 42 H 0.115 0.885 43 H 0.099 0.901 44 H 0.077 0.923 45 H 0.101 0.899 46 H 0.087 0.913 47 H 0.181 0.819 48 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -4.794 -9.755 30.630 32.501 hybrid contribution 1.136 -1.072 0.092 1.565 sum -3.658 -10.827 30.722 32.778 Atomic orbital electron populations 1.22229 0.96798 1.01326 1.02467 1.21396 0.93542 0.84320 1.02466 1.48243 1.64097 1.13188 1.07700 1.19251 0.96119 0.93732 0.78139 1.21436 0.96983 1.31735 1.06215 0.92589 1.24942 0.97800 0.94984 0.96463 1.69938 1.35636 1.33442 1.14296 0.86503 0.84769 0.77624 0.78532 1.20720 1.21102 1.19980 1.20162 0.78875 0.87077 0.84860 1.90671 1.45146 1.17672 1.86931 1.21882 1.02373 0.94175 0.90415 1.59975 1.32516 1.37818 0.99895 1.22275 1.01903 0.95197 0.88882 1.21456 1.02334 0.96272 0.80388 1.47642 1.11844 1.52807 1.21446 1.21964 0.89719 0.96682 0.97591 1.16992 0.82502 0.79118 0.82971 1.90847 1.40773 1.43742 1.64231 1.21990 0.91820 1.06596 0.96652 1.21850 0.99537 1.05345 0.93936 1.22971 0.86437 1.05171 1.01320 1.43491 1.07049 1.45175 1.14368 0.70985 1.73766 1.25847 1.15072 0.94676 0.92277 0.92956 0.91993 0.90026 0.91987 0.95074 0.93840 0.92759 0.93047 0.88740 0.82981 0.95393 0.90464 0.88460 0.90117 0.92259 0.89943 0.91288 0.81855 0.79765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.39 10.24 37.15 0.38 -2.01 16 2 C 0.11 1.76 5.93 -4.05 -0.02 1.73 16 3 N -0.60 -12.94 2.46 -175.07 -0.43 -13.37 16 4 C 0.25 6.59 5.16 -5.19 -0.03 6.56 16 5 C -0.52 -15.07 9.39 -34.44 -0.32 -15.39 16 6 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.89 -26.95 13.29 55.43 0.74 -26.21 16 9 Si 0.90 22.09 29.54 -169.99 -5.02 17.07 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 13 C 0.50 10.82 7.71 -10.99 -0.08 10.73 16 14 O -0.53 -13.69 15.78 5.56 0.09 -13.60 16 15 C 0.04 0.70 4.72 -4.98 -0.02 0.67 16 16 N -0.67 -10.19 6.13 -115.06 -0.70 -10.89 16 17 C 0.05 0.59 6.01 -3.82 -0.02 0.57 16 18 C 0.12 1.34 5.61 -4.04 -0.02 1.32 16 19 N -0.60 -6.43 2.87 -182.74 -0.53 -6.96 16 20 C 0.08 0.65 9.30 59.85 0.56 1.20 16 21 C 0.60 7.50 7.67 -12.39 -0.09 7.41 16 22 O -0.52 -8.30 16.56 5.30 0.09 -8.21 16 23 C -0.01 -0.10 6.75 -82.77 -0.56 -0.66 16 24 C -0.18 -1.44 10.81 -39.36 -0.43 -1.87 16 25 C -0.01 -0.07 12.02 -17.17 -0.21 -0.27 16 26 N -0.39 -1.71 6.83 30.47 0.21 -1.50 16 27 H 0.45 0.24 8.96 -190.44 -1.71 -1.47 16 28 N -0.26 -2.01 9.01 33.42 0.30 -1.71 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.72 7.22 -51.93 -0.38 0.34 16 31 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.08 1.38 8.07 -51.93 -0.42 0.96 16 33 H 0.06 0.85 6.44 -51.93 -0.33 0.51 16 34 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 35 H 0.04 1.32 7.42 -51.93 -0.39 0.93 16 36 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 37 H 0.05 0.72 7.40 -51.93 -0.38 0.33 16 38 H 0.09 1.37 7.19 -51.93 -0.37 1.00 16 39 H 0.35 5.38 8.43 -39.29 -0.33 5.05 16 40 H 0.03 0.31 8.14 -51.93 -0.42 -0.12 16 41 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.10 1.31 7.49 -51.93 -0.39 0.92 16 43 H 0.08 0.77 8.07 -51.93 -0.42 0.35 16 44 H 0.06 0.43 8.14 -51.92 -0.42 0.01 16 45 H 0.08 0.63 5.96 -51.93 -0.31 0.32 16 46 H 0.07 0.45 8.03 -51.93 -0.42 0.03 16 47 H 0.16 1.24 8.06 -52.48 -0.42 0.82 16 48 H 0.19 0.09 8.06 -52.49 -0.42 -0.33 16 LS Contribution 402.26 15.07 6.06 6.06 Total: -1.00 -38.15 402.26 -8.94 -47.09 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -8.77 Total: 0.62 kcal Atomic # 6 Polarization: 12.61 SS G_CDS: -0.97 Total: 11.63 kcal Atomic # 7 Polarization: -60.24 SS G_CDS: -0.41 Total: -60.65 kcal Atomic # 8 Polarization: -21.99 SS G_CDS: 0.18 Total: -21.81 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -38.15 -8.94 -47.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267347964.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.440 kcal (2) G-P(sol) polarization free energy of solvation -38.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds