Wall clock time and date at job start Tue Mar 31 2020 20:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46495 * 109.47096 * 2 1 4 4 C 1.46501 * 119.99945 * 269.99766 * 3 2 1 5 5 C 1.50703 * 109.47485 * 270.00108 * 4 3 2 6 6 H 1.08002 * 119.99690 * 0.02562 * 5 4 3 7 7 C 1.37872 * 120.00317 * 180.02562 * 5 4 3 8 8 N 1.31521 * 119.99870 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00215 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.46818 * 89.99478 * 9 7 5 11 11 H 1.48498 * 109.47030 * 209.99731 * 9 7 5 12 12 H 1.48496 * 109.46811 * 329.99810 * 9 7 5 13 13 C 1.34775 * 120.00257 * 89.99974 * 3 2 1 14 14 O 1.21277 * 120.00231 * 180.02562 * 13 3 2 15 15 C 1.50698 * 120.00182 * 0.02562 * 13 3 2 16 16 N 1.46896 * 109.47670 * 179.97438 * 15 13 3 17 17 C 1.46901 * 111.00173 * 180.02562 * 16 15 13 18 18 C 1.53001 * 109.46839 * 180.02562 * 17 16 15 19 19 N 1.46497 * 109.46986 * 179.97438 * 18 17 16 20 20 C 1.46507 * 120.00309 * 89.99303 * 19 18 17 21 21 C 1.34783 * 120.00158 * 269.72292 * 19 18 17 22 22 O 1.21577 * 119.99512 * 5.36465 * 21 19 18 23 23 C 1.47709 * 120.00029 * 185.36311 * 21 19 18 24 24 C 1.41501 * 126.51430 * 185.95994 * 23 21 19 25 25 C 1.35366 * 105.50178 * 179.90179 * 24 23 21 26 26 N 1.35033 * 107.22891 * 0.35910 * 25 24 23 27 27 H 0.96997 * 124.88473 * 179.76176 * 26 25 24 28 28 N 1.28476 * 110.22834 * 359.76197 * 26 25 24 29 29 H 1.09002 * 109.47265 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47314 * 299.99921 * 1 2 3 31 31 H 1.09003 * 109.47424 * 60.00063 * 1 2 3 32 32 H 1.09002 * 109.47405 * 239.99567 * 2 1 3 33 33 H 1.09003 * 109.47424 * 119.99937 * 2 1 3 34 34 H 1.08999 * 109.47329 * 29.99975 * 4 3 2 35 35 H 1.09001 * 109.47504 * 150.00011 * 4 3 2 36 36 H 0.96999 * 119.99896 * 180.02562 * 8 7 5 37 37 H 1.09003 * 109.47044 * 59.99542 * 15 13 3 38 38 H 1.09004 * 109.46938 * 300.00199 * 15 13 3 39 39 H 1.00897 * 111.00245 * 303.95636 * 16 15 13 40 40 H 1.08991 * 109.47343 * 59.99826 * 17 16 15 41 41 H 1.09006 * 109.46837 * 299.99512 * 17 16 15 42 42 H 1.08998 * 109.47442 * 60.00009 * 18 17 16 43 43 H 1.08997 * 109.46854 * 299.99370 * 18 17 16 44 44 H 1.09007 * 109.46562 * 95.36103 * 20 19 18 45 45 H 1.08998 * 109.47280 * 215.35653 * 20 19 18 46 46 H 1.08998 * 109.47095 * 335.36526 * 20 19 18 47 47 H 1.08003 * 127.25323 * 0.02562 * 24 23 21 48 48 H 1.07998 * 126.38228 * 180.15547 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6857 1.8350 -1.7038 6 1 4.3426 1.2302 -1.0962 7 6 4.1494 2.3904 -2.8775 8 7 3.3493 3.1265 -3.6176 9 14 5.9134 2.0963 -3.4171 10 1 5.9760 0.8757 -4.2606 11 1 6.3929 3.2639 -4.1994 12 1 6.7735 1.9154 -2.2201 13 6 2.2429 2.0166 1.1672 14 8 2.6467 3.1601 1.1672 15 6 1.9923 1.3061 2.4723 16 7 2.3109 2.2059 3.5888 17 6 2.0786 1.5452 4.8802 18 6 2.4201 2.5117 6.0161 19 7 2.1879 1.8531 7.3039 20 6 3.2681 1.1012 7.9476 21 6 0.9821 1.9434 7.8993 22 8 0.0595 2.4875 7.3242 23 6 0.7816 1.3814 9.2506 24 6 -0.4438 1.2936 9.9527 25 6 -0.1414 0.7116 11.1368 26 7 1.1883 0.4760 11.1387 27 1 1.6782 0.0671 11.8692 28 7 1.7110 0.8716 10.0338 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.5817 1.6876 -2.0284 35 1 2.0955 3.1410 -1.1385 36 1 3.6754 3.5170 -4.4435 37 1 2.6228 0.4188 2.5298 38 1 0.9444 1.0115 2.5302 39 1 3.2592 2.5440 3.5215 40 1 2.7097 0.6597 4.9540 41 1 1.0313 1.2524 4.9553 42 1 1.7887 3.3970 5.9422 43 1 3.4673 2.8048 5.9412 44 1 3.7772 1.7415 8.6681 45 1 2.8516 0.2351 8.4619 46 1 3.9792 0.7678 7.1918 47 1 -1.4160 1.6202 9.6143 48 1 -0.8339 0.4817 11.9330 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267347964.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:27 Heat of formation + Delta-G solvation = -4.344262 kcal Electronic energy + Delta-G solvation = -28511.166351 eV Core-core repulsion = 24409.505509 eV Total energy + Delta-G solvation = -4101.660843 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.57932 -40.81970 -40.58257 -37.62122 -36.90898 -36.06856 -34.87872 -33.00082 -31.86543 -31.61911 -30.86454 -29.23288 -27.73590 -26.96196 -25.00613 -24.44170 -23.69159 -23.03121 -22.50448 -20.33683 -19.88529 -19.25261 -18.61390 -18.02962 -17.94373 -17.47858 -17.14510 -16.96475 -16.85343 -16.31867 -15.79405 -15.53563 -15.23025 -14.84993 -14.65592 -14.64758 -14.55216 -14.35866 -14.08937 -13.95627 -13.86545 -13.51500 -13.44698 -13.26455 -13.19664 -13.06653 -12.80909 -12.65495 -12.45937 -12.17334 -12.11497 -11.86272 -11.75549 -11.70391 -11.26215 -10.63373 -10.59544 -10.42306 -10.13681 -9.75038 -9.44418 -9.39517 -8.20939 -6.36203 0.51450 1.24297 1.36554 1.40063 1.50273 1.73807 1.86270 2.17417 2.31066 2.32257 2.44567 3.08087 3.27554 3.38212 3.71278 3.89110 4.01314 4.08492 4.11986 4.22358 4.32485 4.36529 4.36571 4.44875 4.48605 4.65758 4.70706 4.76347 4.78893 4.86028 4.91748 4.96243 4.99063 5.02244 5.05822 5.23219 5.32629 5.38939 5.48278 5.59156 5.82114 5.92528 6.07822 6.14035 6.29417 6.33613 6.71814 6.83238 6.84238 7.09601 7.29644 7.52215 8.86161 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.022783 B = 0.001855 C = 0.001790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.716302 B =15088.245765 C =15636.843749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.100 3.900 3 N -0.604 5.604 4 C 0.262 3.738 5 C -0.541 4.541 6 H 0.055 0.945 7 C 0.004 3.996 8 N -0.929 5.929 9 Si 0.971 3.029 10 H -0.263 1.263 11 H -0.282 1.282 12 H -0.271 1.271 13 C 0.494 3.506 14 O -0.585 6.585 15 C 0.061 3.939 16 N -0.688 5.688 17 C 0.060 3.940 18 C 0.121 3.879 19 N -0.601 5.601 20 C 0.084 3.916 21 C 0.590 3.410 22 O -0.572 6.572 23 C -0.043 4.043 24 C -0.212 4.212 25 C 0.016 3.984 26 N -0.368 5.368 27 H 0.465 0.535 28 N -0.260 5.260 29 H 0.096 0.904 30 H 0.056 0.944 31 H 0.037 0.963 32 H 0.074 0.926 33 H 0.100 0.900 34 H 0.020 0.980 35 H -0.006 1.006 36 H 0.267 0.733 37 H 0.084 0.916 38 H 0.113 0.887 39 H 0.349 0.651 40 H 0.053 0.947 41 H 0.062 0.938 42 H 0.068 0.932 43 H 0.101 0.899 44 H 0.065 0.935 45 H 0.085 0.915 46 H 0.086 0.914 47 H 0.157 0.843 48 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.815 -14.052 33.880 36.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.022 4.022 3 N -0.336 5.336 4 C 0.141 3.859 5 C -0.579 4.579 6 H 0.073 0.927 7 C -0.195 4.195 8 N -0.569 5.569 9 Si 0.795 3.205 10 H -0.188 1.188 11 H -0.208 1.208 12 H -0.196 1.196 13 C 0.283 3.717 14 O -0.465 6.465 15 C -0.071 4.071 16 N -0.322 5.322 17 C -0.070 4.070 18 C -0.002 4.002 19 N -0.333 5.333 20 C -0.058 4.058 21 C 0.378 3.622 22 O -0.449 6.449 23 C -0.202 4.202 24 C -0.241 4.241 25 C -0.129 4.129 26 N -0.085 5.085 27 H 0.314 0.686 28 N -0.099 5.099 29 H 0.115 0.885 30 H 0.075 0.925 31 H 0.057 0.943 32 H 0.092 0.908 33 H 0.119 0.881 34 H 0.038 0.962 35 H 0.012 0.988 36 H 0.075 0.925 37 H 0.101 0.899 38 H 0.131 0.869 39 H 0.168 0.832 40 H 0.071 0.929 41 H 0.081 0.919 42 H 0.087 0.913 43 H 0.120 0.880 44 H 0.084 0.916 45 H 0.104 0.896 46 H 0.104 0.896 47 H 0.175 0.825 48 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -3.577 -12.988 33.402 36.017 hybrid contribution 0.722 -0.114 -0.648 0.976 sum -2.856 -13.102 32.755 35.393 Atomic orbital electron populations 1.22163 0.94875 1.03458 1.01537 1.21740 0.95103 0.81366 1.03977 1.48276 1.64085 1.15106 1.06167 1.18691 0.95385 0.91437 0.80425 1.21703 0.97772 1.31915 1.06540 0.92679 1.25916 1.02579 0.94483 0.96482 1.70071 1.37854 1.34230 1.14768 0.85366 0.78792 0.78121 0.78212 1.18799 1.20765 1.19596 1.21211 0.77410 0.86663 0.86451 1.90636 1.47665 1.20340 1.87891 1.21770 1.04025 0.94167 0.87116 1.59922 1.32637 1.38755 1.00886 1.22173 1.01447 0.95871 0.87503 1.21355 1.02832 0.95254 0.80800 1.47731 1.12099 1.52458 1.20978 1.22110 0.89029 0.96516 0.98118 1.17452 0.82347 0.78534 0.83885 1.90802 1.42362 1.46081 1.65696 1.21780 0.93316 1.08805 0.96284 1.22038 0.99015 1.07406 0.95604 1.23515 0.86590 1.02095 1.00672 1.43631 1.07445 1.43548 1.13835 0.68634 1.73677 1.25587 1.15142 0.95456 0.88531 0.92507 0.94337 0.90771 0.88149 0.96159 0.98813 0.92466 0.89884 0.86932 0.83157 0.92936 0.91905 0.91337 0.88031 0.91622 0.89620 0.89552 0.82538 0.75266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.29 10.24 71.98 0.74 -3.55 16 2 C 0.10 3.14 5.93 86.38 0.51 3.65 16 3 N -0.60 -26.48 2.46 -826.17 -2.03 -28.51 16 4 C 0.26 14.66 5.16 85.63 0.44 15.10 16 5 C -0.54 -31.78 9.39 25.60 0.24 -31.54 16 6 H 0.05 3.17 7.81 -2.91 -0.02 3.15 16 7 C 0.00 0.24 5.46 84.65 0.46 0.70 16 8 N -0.93 -57.55 13.29 21.45 0.28 -57.27 16 9 Si 0.97 45.53 29.54 68.60 2.03 47.56 16 10 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 11 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 12 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 13 C 0.49 21.46 7.71 87.66 0.68 22.14 16 14 O -0.59 -31.71 15.78 -3.02 -0.05 -31.76 16 15 C 0.06 1.84 4.72 85.56 0.40 2.24 16 16 N -0.69 -20.59 6.13 -517.93 -3.17 -23.76 16 17 C 0.06 1.40 6.01 86.30 0.52 1.92 16 18 C 0.12 2.72 5.61 86.38 0.48 3.21 16 19 N -0.60 -12.58 2.87 -850.32 -2.44 -15.03 16 20 C 0.08 1.15 9.30 127.77 1.19 2.34 16 21 C 0.59 15.27 7.67 86.75 0.67 15.94 16 22 O -0.57 -19.40 16.56 -3.96 -0.07 -19.47 16 23 C -0.04 -0.86 6.75 42.46 0.29 -0.57 16 24 C -0.21 -3.29 10.81 22.41 0.24 -3.05 16 25 C 0.02 0.09 12.02 83.54 1.00 1.10 16 26 N -0.37 -2.14 6.83 -57.51 -0.39 -2.53 16 27 H 0.46 -1.24 8.96 -219.99 -1.97 -3.21 16 28 N -0.26 -3.62 9.01 -48.18 -0.43 -4.05 16 29 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.06 1.45 7.22 -2.38 -0.02 1.43 16 31 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.07 2.44 8.07 -2.39 -0.02 2.42 16 33 H 0.10 2.38 6.44 -2.39 -0.02 2.37 16 34 H 0.02 1.16 8.07 -2.39 -0.02 1.14 16 35 H -0.01 -0.41 7.42 -2.39 -0.02 -0.43 16 36 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 37 H 0.08 2.01 7.40 -2.39 -0.02 1.99 16 38 H 0.11 3.00 7.19 -2.38 -0.02 2.99 16 39 H 0.35 10.62 8.43 -89.70 -0.76 9.86 16 40 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 42 H 0.07 1.96 7.49 -2.39 -0.02 1.94 16 43 H 0.10 1.84 8.07 -2.39 -0.02 1.82 16 44 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 45 H 0.09 1.15 5.96 -2.39 -0.01 1.13 16 46 H 0.09 0.88 8.03 -2.39 -0.02 0.86 16 47 H 0.16 2.49 8.06 -2.91 -0.02 2.47 16 48 H 0.23 -0.89 8.06 -2.91 -0.02 -0.91 16 Total: -1.00 -89.79 402.26 -0.15 -89.94 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: -1.74 Total: 15.24 kcal Atomic # 6 Polarization: 21.76 SS G_CDS: 7.86 Total: 29.63 kcal Atomic # 7 Polarization: -122.96 SS G_CDS: -8.19 Total: -131.15 kcal Atomic # 8 Polarization: -51.11 SS G_CDS: -0.11 Total: -51.22 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -89.79 -0.15 -89.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267347964.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.593 kcal (2) G-P(sol) polarization free energy of solvation -89.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds