Wall clock time and date at job start Tue Mar 31 2020 20:35:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46501 * 109.46918 * 2 1 4 4 C 1.34776 * 119.99876 * 270.00155 * 3 2 1 5 5 O 1.21278 * 120.00307 * 180.02562 * 4 3 2 6 6 C 1.50706 * 120.00078 * 359.97438 * 4 3 2 7 7 N 1.46496 * 109.47226 * 180.02562 * 6 4 3 8 8 N 1.40168 * 126.35196 * 269.69044 * 7 6 4 9 9 C 1.29399 * 108.13981 * 179.81446 * 8 7 6 10 10 C 1.50703 * 125.58650 * 180.17751 * 9 8 7 11 11 N 1.37358 * 108.83206 * 0.44778 * 9 8 7 12 12 C 1.46496 * 125.83668 * 179.67417 * 11 9 8 13 13 C 1.34820 * 108.33377 * 359.71159 * 11 9 8 14 14 O 1.21813 * 126.30623 * 179.97438 * 13 11 9 15 15 C 1.46502 * 120.00253 * 89.99550 * 3 2 1 16 16 H 1.09002 * 110.64129 * 359.30029 * 15 3 2 17 17 C 1.55157 * 110.86875 * 122.54842 * 15 3 2 18 18 C 1.54909 * 101.57958 * 153.93745 * 17 15 3 19 19 N 1.47426 * 104.83381 * 322.98989 * 18 17 15 20 20 C 1.36939 * 125.64917 * 204.16150 * 19 18 17 21 21 H 1.08004 * 119.99851 * 179.97438 * 20 19 18 22 22 C 1.38815 * 120.00106 * 359.96353 * 20 19 18 23 23 N 1.31618 * 119.99789 * 359.97438 * 22 20 19 24 24 Si 1.86791 * 120.00098 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47350 * 89.99361 * 24 22 20 26 26 H 1.48501 * 109.47284 * 209.99442 * 24 22 20 27 27 H 1.48505 * 109.46977 * 329.99516 * 24 22 20 28 28 C 1.47018 * 108.70104 * 24.12870 * 19 18 17 29 29 H 1.08998 * 109.47308 * 300.00346 * 1 2 3 30 30 H 1.08997 * 109.47106 * 60.00230 * 1 2 3 31 31 H 1.09005 * 109.46987 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47308 * 239.99654 * 2 1 3 33 33 H 1.08999 * 109.47103 * 119.98992 * 2 1 3 34 34 H 1.08994 * 109.47148 * 300.00903 * 6 4 3 35 35 H 1.09002 * 109.46544 * 60.00548 * 6 4 3 36 36 H 1.08997 * 109.47493 * 270.31606 * 10 9 8 37 37 H 1.09000 * 109.46765 * 30.31530 * 10 9 8 38 38 H 1.08999 * 109.47167 * 150.31108 * 10 9 8 39 39 H 1.08996 * 109.47274 * 180.02562 * 12 11 9 40 40 H 1.09004 * 109.46912 * 300.01705 * 12 11 9 41 41 H 1.09003 * 109.47374 * 60.01659 * 12 11 9 42 42 H 1.09000 * 111.00495 * 272.01128 * 17 15 3 43 43 H 1.08997 * 111.00429 * 35.86706 * 17 15 3 44 44 H 1.08998 * 110.36917 * 204.14700 * 18 17 15 45 45 H 1.09009 * 110.46209 * 81.87337 * 18 17 15 46 46 H 0.96996 * 119.99991 * 179.97438 * 23 22 20 47 47 H 1.08998 * 109.88222 * 239.52595 * 28 19 18 48 48 H 1.09004 * 109.88300 * 118.35961 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2429 2.0166 -1.1672 5 8 2.6475 3.1598 -1.1673 6 6 1.9922 1.3059 -2.4724 7 7 2.3100 2.2033 -3.5859 8 7 1.4243 3.0841 -4.2218 9 6 2.0737 3.7067 -5.1519 10 6 1.4983 4.7486 -6.0763 11 7 3.3719 3.2580 -5.1627 12 6 4.4277 3.7090 -6.0726 13 6 3.5082 2.3309 -4.1934 14 8 4.5255 1.7205 -3.9171 15 6 2.2624 2.0719 1.2687 16 1 2.0202 1.4245 2.1115 17 6 3.7318 2.5621 1.3574 18 6 3.6012 3.7624 2.3279 19 7 2.3151 4.3924 1.9780 20 6 1.9776 5.6993 2.2089 21 1 1.0058 6.0664 1.9133 22 6 2.8844 6.5522 2.8230 23 7 4.0683 6.1047 3.1839 24 14 2.4243 8.3351 3.1373 25 1 1.7867 8.4538 4.4732 26 1 3.6472 9.1766 3.0960 27 1 1.4732 8.7924 2.0925 28 6 1.4551 3.3853 1.3395 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5137 0.8901 34 1 2.6227 0.4187 -2.5298 35 1 0.9444 1.0115 -2.5302 36 1 1.0995 4.2635 -6.9672 37 1 0.6985 5.2852 -5.5660 38 1 2.2808 5.4507 -6.3643 39 1 5.3526 3.1779 -5.8476 40 1 4.1324 3.5042 -7.1017 41 1 4.5836 4.7803 -5.9457 42 1 4.3768 1.7895 1.7761 43 1 4.0952 2.8859 0.3822 44 1 4.4212 4.4642 2.1758 45 1 3.5855 3.4168 3.3616 46 1 4.7021 6.7007 3.6127 47 1 1.1871 3.7103 0.3343 48 1 0.5547 3.2353 1.9353 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267790691.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:04 Heat of formation + Delta-G solvation = 59.306597 kcal Electronic energy + Delta-G solvation = -30944.621037 eV Core-core repulsion = 26845.720302 eV Total energy + Delta-G solvation = -4098.900734 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.46617 -40.00372 -37.34556 -36.85087 -35.48487 -35.30693 -32.54035 -32.16899 -30.51460 -30.28494 -28.84171 -27.54063 -27.34421 -26.08264 -24.24004 -23.35646 -21.94687 -21.18139 -20.72910 -20.04069 -18.72365 -17.51668 -17.27641 -16.75835 -16.42282 -16.13331 -15.80049 -15.33154 -14.95471 -14.54102 -14.26481 -14.11091 -13.87884 -13.82562 -13.71867 -13.39694 -13.32788 -13.01916 -12.83100 -12.68831 -12.43049 -12.21062 -11.98993 -11.89361 -11.85780 -11.62890 -11.37746 -11.16999 -10.89099 -10.77741 -10.69210 -10.49190 -10.29111 -10.21067 -10.00725 -9.71556 -9.44192 -9.12052 -8.51565 -8.43984 -8.27200 -6.65354 -5.50407 -2.90375 1.64061 1.87739 2.66833 2.85199 2.91038 3.25649 3.48387 3.52594 3.55600 4.23065 4.45956 4.49674 4.62402 4.77782 4.80598 4.88695 4.97753 5.02413 5.11975 5.12324 5.28529 5.29512 5.45299 5.48568 5.53205 5.57968 5.65380 5.67945 5.70612 5.78776 5.87804 5.95310 6.02744 6.12480 6.36257 6.47201 6.63151 6.68887 6.73567 6.87001 7.28203 7.58735 7.60352 7.70371 7.77384 8.00824 8.03434 8.47419 8.52904 9.36828 9.98252 10.63838 11.53743 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009971 B = 0.003958 C = 0.003241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2807.360625 B = 7071.959188 C = 8637.622677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.102 3.898 3 N -0.604 5.604 4 C 0.489 3.511 5 O -0.490 6.490 6 C 0.144 3.856 7 N -0.435 5.435 8 N -0.270 5.270 9 C 0.274 3.726 10 C -0.074 4.074 11 N -0.558 5.558 12 C 0.097 3.903 13 C 0.655 3.345 14 O -0.554 6.554 15 C 0.136 3.864 16 H 0.089 0.911 17 C -0.155 4.155 18 C 0.158 3.842 19 N -0.596 5.596 20 C -0.212 4.212 21 H 0.074 0.926 22 C -0.014 4.014 23 N -0.924 5.924 24 Si 0.913 3.087 25 H -0.290 1.290 26 H -0.291 1.291 27 H -0.282 1.282 28 C 0.134 3.866 29 H 0.064 0.936 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.119 0.881 35 H 0.120 0.880 36 H 0.092 0.908 37 H 0.099 0.901 38 H 0.087 0.913 39 H 0.094 0.906 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.053 0.947 43 H 0.077 0.923 44 H 0.106 0.894 45 H 0.010 0.990 46 H 0.250 0.750 47 H 0.038 0.962 48 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.683 -12.647 -19.355 23.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.022 4.022 3 N -0.339 5.339 4 C 0.274 3.726 5 O -0.362 6.362 6 C 0.019 3.981 7 N -0.254 5.254 8 N -0.093 5.093 9 C -0.005 4.005 10 C -0.133 4.133 11 N -0.287 5.287 12 C -0.046 4.046 13 C 0.355 3.645 14 O -0.428 6.428 15 C 0.034 3.966 16 H 0.107 0.893 17 C -0.194 4.194 18 C 0.033 3.967 19 N -0.322 5.322 20 C -0.341 4.341 21 H 0.092 0.908 22 C -0.209 4.209 23 N -0.573 5.573 24 Si 0.744 3.256 25 H -0.218 1.218 26 H -0.217 1.217 27 H -0.208 1.208 28 C 0.007 3.993 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.101 0.899 34 H 0.137 0.863 35 H 0.138 0.862 36 H 0.111 0.889 37 H 0.118 0.882 38 H 0.106 0.894 39 H 0.113 0.887 40 H 0.095 0.905 41 H 0.097 0.903 42 H 0.071 0.929 43 H 0.096 0.904 44 H 0.123 0.877 45 H 0.028 0.972 46 H 0.061 0.939 47 H 0.055 0.945 48 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges -5.532 -12.425 -18.550 23.002 hybrid contribution 0.386 0.848 0.061 0.933 sum -5.146 -11.578 -18.490 22.414 Atomic orbital electron populations 1.22260 0.95801 1.02064 1.03075 1.21613 0.94552 0.82777 1.03213 1.47993 1.66331 1.13696 1.05909 1.20721 0.79242 0.87573 0.85106 1.90855 1.42196 1.16684 1.86447 1.21336 1.04343 0.90494 0.81959 1.48172 1.07926 1.38008 1.31323 1.76970 1.17111 1.06779 1.08410 1.24145 0.81904 0.97711 0.96696 1.20407 1.02131 0.94176 0.96588 1.45764 1.11333 1.38103 1.33486 1.21808 0.89765 1.01243 0.91734 1.16602 0.84561 0.82284 0.81101 1.91069 1.29620 1.52358 1.69740 1.22203 0.97627 0.93807 0.83002 0.89299 1.23407 0.93861 0.99479 1.02661 1.21828 0.91430 0.91178 0.92243 1.44290 1.12481 1.06231 1.69183 1.19054 0.99055 0.84315 1.31631 0.90763 1.24752 0.96379 0.98301 1.01468 1.69804 1.06681 1.33851 1.47013 0.86081 0.77002 0.84665 0.77845 1.21755 1.21744 1.20822 1.21468 0.92674 0.88271 0.96851 0.91720 0.92457 0.91552 0.90759 0.89922 0.86325 0.86226 0.88919 0.88199 0.89379 0.88723 0.90455 0.90300 0.92857 0.90443 0.87668 0.97234 0.93933 0.94456 0.96747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.54 10.24 37.16 0.38 -1.16 16 2 C 0.10 1.02 5.91 -4.04 -0.02 1.00 16 3 N -0.60 -9.40 2.54 -164.02 -0.42 -9.82 16 4 C 0.49 8.70 6.85 -10.98 -0.08 8.62 16 5 O -0.49 -11.49 12.78 5.56 0.07 -11.42 16 6 C 0.14 1.97 5.42 -5.19 -0.03 1.94 16 7 N -0.44 -6.95 3.11 -66.31 -0.21 -7.16 16 8 N -0.27 -3.98 12.53 32.97 0.41 -3.57 16 9 C 0.27 3.21 7.98 -154.16 -1.23 1.98 16 10 C -0.07 -0.45 10.20 36.01 0.37 -0.09 16 11 N -0.56 -7.16 3.14 -125.41 -0.39 -7.55 16 12 C 0.10 0.78 10.65 59.84 0.64 1.42 16 13 C 0.65 11.07 8.61 -86.72 -0.75 10.32 16 14 O -0.55 -10.87 17.48 5.09 0.09 -10.78 16 15 C 0.14 2.60 3.43 -66.10 -0.23 2.38 16 16 H 0.09 1.49 7.87 -51.93 -0.41 1.08 16 17 C -0.15 -3.41 6.42 -24.58 -0.16 -3.57 16 18 C 0.16 4.24 5.89 -2.53 -0.01 4.23 16 19 N -0.60 -16.83 3.39 -170.07 -0.58 -17.40 16 20 C -0.21 -6.42 10.27 -15.06 -0.15 -6.58 16 21 H 0.07 2.19 7.83 -52.48 -0.41 1.78 16 22 C -0.01 -0.43 5.49 -17.43 -0.10 -0.52 16 23 N -0.92 -28.76 10.09 55.49 0.56 -28.20 16 24 Si 0.91 23.49 29.55 -169.99 -5.02 18.47 16 25 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 26 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 27 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 28 C 0.13 3.16 6.47 -3.07 -0.02 3.14 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.52 7.22 -51.93 -0.38 0.14 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.58 6.44 -51.93 -0.33 0.24 16 33 H 0.08 0.74 7.96 -51.93 -0.41 0.33 16 34 H 0.12 1.37 7.37 -51.93 -0.38 0.99 16 35 H 0.12 1.26 7.19 -51.93 -0.37 0.88 16 36 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 37 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.09 0.38 7.85 -51.93 -0.41 -0.03 16 39 H 0.09 0.87 7.73 -51.93 -0.40 0.47 16 40 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.08 1.92 6.04 -51.93 -0.31 1.61 16 44 H 0.11 3.20 5.87 -51.93 -0.31 2.89 16 45 H 0.01 0.27 8.14 -51.92 -0.42 -0.16 16 46 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 47 H 0.04 0.95 6.06 -51.93 -0.31 0.64 16 48 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 LS Contribution 386.81 15.07 5.83 5.83 Total: -1.00 -41.85 386.81 -8.43 -50.28 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: -7.38 Total: -1.79 kcal Atomic # 6 Polarization: 24.50 SS G_CDS: -1.39 Total: 23.12 kcal Atomic # 7 Polarization: -73.08 SS G_CDS: -0.62 Total: -73.70 kcal Atomic # 8 Polarization: -22.36 SS G_CDS: 0.16 Total: -22.20 kcal Atomic # 14 Polarization: 23.49 SS G_CDS: -5.02 Total: 18.47 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -41.85 -8.43 -50.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267790691.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.586 kcal (2) G-P(sol) polarization free energy of solvation -41.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds