Wall clock time and date at job start Tue Mar 31 2020 20:35:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46501 * 109.46918 * 2 1 4 4 C 1.34776 * 119.99876 * 270.00155 * 3 2 1 5 5 O 1.21278 * 120.00307 * 180.02562 * 4 3 2 6 6 C 1.50706 * 120.00078 * 359.97438 * 4 3 2 7 7 N 1.46496 * 109.47226 * 180.02562 * 6 4 3 8 8 N 1.40168 * 126.35196 * 269.69044 * 7 6 4 9 9 C 1.29399 * 108.13981 * 179.81446 * 8 7 6 10 10 C 1.50703 * 125.58650 * 180.17751 * 9 8 7 11 11 N 1.37358 * 108.83206 * 0.44778 * 9 8 7 12 12 C 1.46496 * 125.83668 * 179.67417 * 11 9 8 13 13 C 1.34820 * 108.33377 * 359.71159 * 11 9 8 14 14 O 1.21813 * 126.30623 * 179.97438 * 13 11 9 15 15 C 1.46502 * 120.00253 * 89.99550 * 3 2 1 16 16 H 1.09002 * 110.64129 * 359.30029 * 15 3 2 17 17 C 1.55157 * 110.86875 * 122.54842 * 15 3 2 18 18 C 1.54909 * 101.57958 * 153.93745 * 17 15 3 19 19 N 1.47426 * 104.83381 * 322.98989 * 18 17 15 20 20 C 1.36939 * 125.64917 * 204.16150 * 19 18 17 21 21 H 1.08004 * 119.99851 * 179.97438 * 20 19 18 22 22 C 1.38815 * 120.00106 * 359.96353 * 20 19 18 23 23 N 1.31618 * 119.99789 * 359.97438 * 22 20 19 24 24 Si 1.86791 * 120.00098 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47350 * 89.99361 * 24 22 20 26 26 H 1.48501 * 109.47284 * 209.99442 * 24 22 20 27 27 H 1.48505 * 109.46977 * 329.99516 * 24 22 20 28 28 C 1.47018 * 108.70104 * 24.12870 * 19 18 17 29 29 H 1.08998 * 109.47308 * 300.00346 * 1 2 3 30 30 H 1.08997 * 109.47106 * 60.00230 * 1 2 3 31 31 H 1.09005 * 109.46987 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47308 * 239.99654 * 2 1 3 33 33 H 1.08999 * 109.47103 * 119.98992 * 2 1 3 34 34 H 1.08994 * 109.47148 * 300.00903 * 6 4 3 35 35 H 1.09002 * 109.46544 * 60.00548 * 6 4 3 36 36 H 1.08997 * 109.47493 * 270.31606 * 10 9 8 37 37 H 1.09000 * 109.46765 * 30.31530 * 10 9 8 38 38 H 1.08999 * 109.47167 * 150.31108 * 10 9 8 39 39 H 1.08996 * 109.47274 * 180.02562 * 12 11 9 40 40 H 1.09004 * 109.46912 * 300.01705 * 12 11 9 41 41 H 1.09003 * 109.47374 * 60.01659 * 12 11 9 42 42 H 1.09000 * 111.00495 * 272.01128 * 17 15 3 43 43 H 1.08997 * 111.00429 * 35.86706 * 17 15 3 44 44 H 1.08998 * 110.36917 * 204.14700 * 18 17 15 45 45 H 1.09009 * 110.46209 * 81.87337 * 18 17 15 46 46 H 0.96996 * 119.99991 * 179.97438 * 23 22 20 47 47 H 1.08998 * 109.88222 * 239.52595 * 28 19 18 48 48 H 1.09004 * 109.88300 * 118.35961 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2429 2.0166 -1.1672 5 8 2.6475 3.1598 -1.1673 6 6 1.9922 1.3059 -2.4724 7 7 2.3100 2.2033 -3.5859 8 7 1.4243 3.0841 -4.2218 9 6 2.0737 3.7067 -5.1519 10 6 1.4983 4.7486 -6.0763 11 7 3.3719 3.2580 -5.1627 12 6 4.4277 3.7090 -6.0726 13 6 3.5082 2.3309 -4.1934 14 8 4.5255 1.7205 -3.9171 15 6 2.2624 2.0719 1.2687 16 1 2.0202 1.4245 2.1115 17 6 3.7318 2.5621 1.3574 18 6 3.6012 3.7624 2.3279 19 7 2.3151 4.3924 1.9780 20 6 1.9776 5.6993 2.2089 21 1 1.0058 6.0664 1.9133 22 6 2.8844 6.5522 2.8230 23 7 4.0683 6.1047 3.1839 24 14 2.4243 8.3351 3.1373 25 1 1.7867 8.4538 4.4732 26 1 3.6472 9.1766 3.0960 27 1 1.4732 8.7924 2.0925 28 6 1.4551 3.3853 1.3395 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5137 0.8901 34 1 2.6227 0.4187 -2.5298 35 1 0.9444 1.0115 -2.5302 36 1 1.0995 4.2635 -6.9672 37 1 0.6985 5.2852 -5.5660 38 1 2.2808 5.4507 -6.3643 39 1 5.3526 3.1779 -5.8476 40 1 4.1324 3.5042 -7.1017 41 1 4.5836 4.7803 -5.9457 42 1 4.3768 1.7895 1.7761 43 1 4.0952 2.8859 0.3822 44 1 4.4212 4.4642 2.1758 45 1 3.5855 3.4168 3.3616 46 1 4.7021 6.7007 3.6127 47 1 1.1871 3.7103 0.3343 48 1 0.5547 3.2353 1.9353 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267790691.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:02 Heat of formation + Delta-G solvation = 29.399329 kcal Electronic energy + Delta-G solvation = -30945.917913 eV Core-core repulsion = 26845.720302 eV Total energy + Delta-G solvation = -4100.197611 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.51251 -41.40567 -38.66761 -38.52374 -36.84858 -36.38326 -34.40976 -33.26763 -31.77910 -31.35654 -30.60957 -28.99362 -28.32379 -27.39323 -26.22504 -24.30338 -23.10385 -22.34773 -22.14121 -21.98600 -20.08300 -19.02778 -18.56013 -18.30670 -17.59682 -17.33641 -16.97444 -16.84665 -16.49385 -16.23073 -15.87883 -15.40000 -14.96177 -14.91655 -14.71398 -14.59630 -14.25744 -14.12952 -13.91458 -13.75509 -13.64170 -13.57022 -13.31770 -13.16410 -12.97633 -12.91469 -12.90411 -12.77063 -12.65883 -12.32885 -12.21641 -12.06513 -12.03198 -11.84496 -11.50150 -11.45556 -11.26469 -10.77664 -10.53394 -9.66514 -9.59150 -8.89676 -7.79842 -5.23853 0.62916 0.95281 1.39630 1.44023 1.48734 1.52517 1.54650 1.90371 2.13313 2.47351 3.27992 3.32079 3.38435 3.71126 3.73608 3.86262 3.93806 4.00442 4.01601 4.13748 4.17805 4.23419 4.43094 4.45008 4.55888 4.63654 4.67904 4.68777 4.74511 4.78494 4.81072 4.85643 4.92381 4.97457 4.99656 5.01748 5.04791 5.12013 5.38318 5.43559 5.58092 5.63112 5.71355 5.75777 6.26505 6.39444 6.56741 6.86775 7.07030 7.17762 7.75074 8.39704 9.22342 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009971 B = 0.003958 C = 0.003241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2807.360625 B = 7071.959188 C = 8637.622677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.093 3.907 3 N -0.597 5.597 4 C 0.482 3.518 5 O -0.558 6.558 6 C 0.147 3.853 7 N -0.444 5.444 8 N -0.309 5.309 9 C 0.284 3.716 10 C -0.072 4.072 11 N -0.557 5.557 12 C 0.087 3.913 13 C 0.634 3.366 14 O -0.597 6.597 15 C 0.154 3.846 16 H 0.124 0.876 17 C -0.140 4.140 18 C 0.163 3.837 19 N -0.619 5.619 20 C -0.238 4.238 21 H 0.073 0.927 22 C -0.070 4.070 23 N -0.950 5.950 24 Si 0.984 3.016 25 H -0.278 1.278 26 H -0.291 1.291 27 H -0.273 1.273 28 C 0.135 3.865 29 H 0.046 0.954 30 H 0.052 0.948 31 H 0.098 0.902 32 H 0.104 0.896 33 H 0.102 0.898 34 H 0.141 0.859 35 H 0.154 0.846 36 H 0.126 0.874 37 H 0.099 0.901 38 H 0.111 0.889 39 H 0.078 0.922 40 H 0.118 0.882 41 H 0.097 0.903 42 H 0.084 0.916 43 H 0.046 0.954 44 H 0.062 0.938 45 H 0.000 1.000 46 H 0.247 0.753 47 H 0.013 0.987 48 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.350 -13.864 -21.000 26.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.028 4.028 3 N -0.330 5.330 4 C 0.269 3.731 5 O -0.435 6.435 6 C 0.022 3.978 7 N -0.262 5.262 8 N -0.132 5.132 9 C 0.006 3.994 10 C -0.131 4.131 11 N -0.285 5.285 12 C -0.053 4.053 13 C 0.333 3.667 14 O -0.474 6.474 15 C 0.050 3.950 16 H 0.142 0.858 17 C -0.179 4.179 18 C 0.037 3.963 19 N -0.345 5.345 20 C -0.368 4.368 21 H 0.091 0.909 22 C -0.261 4.261 23 N -0.600 5.600 24 Si 0.812 3.188 25 H -0.205 1.205 26 H -0.217 1.217 27 H -0.199 1.199 28 C 0.008 3.992 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.117 0.883 32 H 0.122 0.878 33 H 0.121 0.879 34 H 0.159 0.841 35 H 0.171 0.829 36 H 0.144 0.856 37 H 0.118 0.882 38 H 0.130 0.870 39 H 0.097 0.903 40 H 0.137 0.863 41 H 0.115 0.885 42 H 0.103 0.897 43 H 0.064 0.936 44 H 0.081 0.919 45 H 0.018 0.982 46 H 0.057 0.943 47 H 0.031 0.969 48 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -7.252 -13.693 -20.230 25.482 hybrid contribution 0.887 1.248 0.501 1.611 sum -6.366 -12.445 -19.728 24.179 Atomic orbital electron populations 1.22224 0.94632 1.03810 1.02038 1.22078 0.95448 0.79529 1.05753 1.48065 1.65467 1.15521 1.03989 1.21527 0.77765 0.86964 0.86825 1.90826 1.45367 1.19811 1.87538 1.21544 1.06768 0.90156 0.79305 1.48408 1.07944 1.38347 1.31483 1.76970 1.17720 1.08310 1.10207 1.25246 0.81146 0.97042 0.95927 1.20743 1.02689 0.93241 0.96424 1.46072 1.12639 1.36899 1.32875 1.22190 0.88248 1.01992 0.92911 1.17010 0.84462 0.83104 0.82141 1.91007 1.30955 1.54179 1.71254 1.21931 0.94249 0.92791 0.86010 0.85825 1.23151 0.96724 0.98361 0.99702 1.21566 0.89807 0.92013 0.92865 1.44592 1.13772 1.06662 1.69455 1.19405 0.99316 0.85952 1.32081 0.90940 1.25685 0.96315 1.02787 1.01360 1.70082 1.07514 1.35094 1.47343 0.84998 0.76749 0.78949 0.78149 1.20483 1.21709 1.19861 1.21562 0.93104 0.89494 0.94996 0.93463 0.92847 0.88343 0.87757 0.87944 0.84100 0.82865 0.85609 0.88217 0.87002 0.90322 0.86339 0.88486 0.89704 0.93570 0.91948 0.98246 0.94349 0.96882 0.95863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.43 10.24 71.98 0.74 -1.70 16 2 C 0.09 1.54 5.91 86.38 0.51 2.05 16 3 N -0.60 -17.80 2.54 -791.24 -2.01 -19.81 16 4 C 0.48 17.22 6.85 87.66 0.60 17.82 16 5 O -0.56 -27.44 12.78 -3.02 -0.04 -27.48 16 6 C 0.15 3.88 5.42 85.64 0.46 4.34 16 7 N -0.44 -14.21 3.11 -481.77 -1.50 -15.71 16 8 N -0.31 -9.00 12.53 -49.59 -0.62 -9.62 16 9 C 0.28 6.31 7.98 137.69 1.10 7.41 16 10 C -0.07 -0.68 10.20 71.24 0.73 0.05 16 11 N -0.56 -13.96 3.14 -668.82 -2.10 -16.06 16 12 C 0.09 1.29 10.65 127.77 1.36 2.65 16 13 C 0.63 21.81 8.61 178.99 1.54 23.35 16 14 O -0.60 -24.23 17.48 -4.71 -0.08 -24.31 16 15 C 0.15 5.79 3.43 46.18 0.16 5.95 16 16 H 0.12 3.82 7.87 -2.39 -0.02 3.80 16 17 C -0.14 -6.28 6.42 31.99 0.21 -6.08 16 18 C 0.16 9.10 5.89 86.85 0.51 9.61 16 19 N -0.62 -36.29 3.39 -691.98 -2.35 -38.63 16 20 C -0.24 -14.97 10.27 84.03 0.86 -14.11 16 21 H 0.07 4.42 7.83 -2.91 -0.02 4.40 16 22 C -0.07 -4.30 5.49 84.86 0.47 -3.84 16 23 N -0.95 -61.42 10.09 21.65 0.22 -61.20 16 24 Si 0.98 49.36 29.55 68.60 2.03 51.39 16 25 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 26 H -0.29 -14.47 7.11 99.48 0.71 -13.76 16 27 H -0.27 -13.19 7.11 99.48 0.71 -12.48 16 28 C 0.13 6.47 6.47 86.73 0.56 7.03 16 29 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.05 0.82 7.22 -2.39 -0.02 0.80 16 31 H 0.10 0.83 8.14 -2.38 -0.02 0.82 16 32 H 0.10 1.17 6.44 -2.39 -0.02 1.16 16 33 H 0.10 1.38 7.96 -2.39 -0.02 1.36 16 34 H 0.14 3.01 7.37 -2.39 -0.02 2.99 16 35 H 0.15 2.89 7.19 -2.39 -0.02 2.87 16 36 H 0.13 0.43 8.14 -2.39 -0.02 0.41 16 37 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.11 0.56 7.85 -2.39 -0.02 0.54 16 39 H 0.08 1.45 7.73 -2.39 -0.02 1.43 16 40 H 0.12 0.77 8.14 -2.38 -0.02 0.75 16 41 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.08 3.22 8.14 -2.39 -0.02 3.20 16 43 H 0.05 2.38 6.04 -2.39 -0.01 2.37 16 44 H 0.06 4.02 5.87 -2.39 -0.01 4.01 16 45 H 0.00 -0.02 8.14 -2.38 -0.02 -0.04 16 46 H 0.25 15.35 8.31 -92.71 -0.77 14.58 16 47 H 0.01 0.70 6.06 -2.39 -0.01 0.69 16 48 H 0.02 1.07 8.14 -2.38 -0.02 1.05 16 Total: -1.00 -100.05 386.81 4.32 -95.74 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: 0.97 Total: 11.17 kcal Atomic # 6 Polarization: 44.74 SS G_CDS: 9.80 Total: 54.55 kcal Atomic # 7 Polarization: -152.69 SS G_CDS: -8.36 Total: -161.05 kcal Atomic # 8 Polarization: -51.67 SS G_CDS: -0.12 Total: -51.79 kcal Atomic # 14 Polarization: 49.36 SS G_CDS: 2.03 Total: 51.39 kcal Total: -100.05 4.32 -95.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267790691.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.138 kcal (2) G-P(sol) polarization free energy of solvation -100.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds