Wall clock time and date at job start Tue Mar 31 2020 21:10:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.37362 * 125.82984 * 2 1 4 4 N 1.29403 * 108.82803 * 179.76982 * 3 2 1 5 5 N 1.40174 * 108.13810 * 0.38357 * 4 3 2 6 6 C 1.46499 * 126.35011 * 179.87525 * 5 4 3 7 7 C 1.53000 * 109.47294 * 269.69301 * 6 5 4 8 8 C 1.50706 * 109.47081 * 179.97438 * 7 6 5 9 9 O 1.21276 * 119.99929 * 359.97438 * 8 7 6 10 10 N 1.34776 * 119.99959 * 179.97438 * 8 7 6 11 11 C 1.46494 * 120.00014 * 185.03291 * 10 8 7 12 12 C 1.53003 * 110.54211 * 296.79463 * 11 10 8 13 13 N 1.46504 * 109.46833 * 306.66304 * 12 11 10 14 14 C 1.36935 * 119.99662 * 174.95158 * 13 12 11 15 15 H 1.08004 * 120.00103 * 359.97438 * 14 13 12 16 16 C 1.38812 * 119.99972 * 179.97438 * 14 13 12 17 17 N 1.31616 * 119.99998 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00183 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46958 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.46848 * 119.99903 * 18 16 14 21 21 H 1.48494 * 109.47491 * 239.99858 * 18 16 14 22 22 C 1.54263 * 110.48884 * 59.40846 * 11 10 8 23 23 C 1.53877 * 106.59863 * 95.06622 * 22 11 10 24 24 C 1.54260 * 106.60069 * 0.02562 * 23 22 11 25 25 C 1.54889 * 110.48686 * 174.18310 * 11 10 8 26 26 C 1.34811 * 125.83307 * 180.02562 * 2 1 3 27 27 O 1.21810 * 126.30228 * 359.97438 * 26 2 1 28 28 H 1.09002 * 109.47443 * 269.98016 * 1 2 3 29 29 H 1.09005 * 109.46543 * 29.97851 * 1 2 3 30 30 H 1.08995 * 109.46906 * 149.97405 * 1 2 3 31 31 H 1.07999 * 125.58743 * 0.02562 * 3 2 1 32 32 H 1.08999 * 109.47445 * 149.68736 * 6 5 4 33 33 H 1.09004 * 109.46826 * 29.68944 * 6 5 4 34 34 H 1.08997 * 109.47557 * 59.99869 * 7 6 5 35 35 H 1.09004 * 109.46892 * 299.99602 * 7 6 5 36 36 H 0.97002 * 119.99743 * 5.03315 * 10 8 7 37 37 H 1.09002 * 109.46944 * 66.65976 * 12 11 10 38 38 H 1.08995 * 109.47374 * 186.66028 * 12 11 10 39 39 H 0.96996 * 120.00259 * 354.94640 * 13 12 11 40 40 H 0.97000 * 120.00654 * 179.97438 * 17 16 14 41 41 H 1.09010 * 110.03004 * 335.78483 * 22 11 10 42 42 H 1.08996 * 110.03499 * 214.35220 * 22 11 10 43 43 H 1.08996 * 110.03257 * 119.28899 * 23 22 11 44 44 H 1.09003 * 110.03010 * 240.71563 * 23 22 11 45 45 H 1.08997 * 110.48746 * 142.28907 * 24 23 22 46 46 H 1.09002 * 110.48534 * 264.93266 * 24 23 22 47 47 H 1.09002 * 110.75606 * 160.94990 * 25 11 10 48 48 H 1.08998 * 110.75885 * 37.57629 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2691 1.1137 0.0000 4 7 3.5066 0.7353 0.0049 5 7 3.5344 -0.6662 -0.0006 6 6 4.7313 -1.5109 -0.0004 7 6 5.1479 -1.8055 -1.4428 8 6 6.3796 -2.6740 -1.4424 9 8 6.8755 -3.0225 -0.3920 10 7 6.9299 -3.0634 -2.6095 11 6 8.0595 -3.9961 -2.6115 12 6 9.2701 -3.3747 -1.9121 13 7 9.5656 -2.0716 -2.5130 14 6 10.5474 -1.2791 -1.9809 15 1 11.1036 -1.6145 -1.1180 16 6 10.8277 -0.0447 -2.5506 17 7 10.1502 0.3638 -3.6024 18 14 12.1665 1.0368 -1.8243 19 1 12.7745 0.3534 -0.6545 20 1 13.2115 1.2864 -2.8495 21 1 11.5782 2.3299 -1.3921 22 6 7.6653 -5.3232 -1.9310 23 6 7.2302 -6.2808 -3.0541 24 6 7.3759 -5.5025 -4.3780 25 6 8.4219 -4.4054 -4.0607 26 6 2.2542 -1.0929 -0.0005 27 8 1.8805 -2.2523 -0.0006 28 1 -0.3634 -0.0004 1.0277 29 1 -0.3632 0.8902 -0.5135 30 1 -0.3633 -0.8897 -0.5142 31 1 1.9249 2.1374 0.0004 32 1 4.5151 -2.4473 0.5139 33 1 5.5414 -0.9930 0.5132 34 1 5.3643 -0.8692 -1.9570 35 1 4.3379 -2.3234 -1.9563 36 1 6.5779 -2.7260 -3.4481 37 1 9.0503 -3.2446 -0.8524 38 1 10.1325 -4.0314 -2.0263 39 1 9.0658 -1.7703 -3.2878 40 1 10.3458 1.2265 -4.0003 41 1 6.8382 -5.1573 -1.2405 42 1 8.5205 -5.7376 -1.3973 43 1 7.8743 -7.1600 -3.0655 44 1 6.1921 -6.5798 -2.9086 45 1 7.7390 -6.1592 -5.1686 46 1 6.4251 -5.0515 -4.6620 47 1 9.4326 -4.8111 -4.1063 48 1 8.3130 -3.5598 -4.7397 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267840616.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:47 Heat of formation + Delta-G solvation = 18.432839 kcal Electronic energy + Delta-G solvation = -30055.675413 eV Core-core repulsion = 25955.002259 eV Total energy + Delta-G solvation = -4100.673154 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.53563 -40.04570 -37.68429 -37.34744 -35.70530 -34.26874 -33.06061 -32.75150 -31.04266 -29.89005 -28.58450 -28.12468 -27.53489 -24.85783 -24.35077 -22.53462 -22.14105 -21.32915 -20.53343 -20.14073 -18.90628 -17.83051 -17.07806 -17.01649 -16.58392 -16.19791 -15.84722 -15.69367 -15.20167 -14.79688 -14.62982 -14.56484 -14.22020 -13.93681 -13.36405 -13.28901 -13.08273 -13.05111 -12.80611 -12.74375 -12.54188 -12.30887 -12.00578 -11.98866 -11.42928 -11.23456 -11.16177 -11.00350 -10.86341 -10.78940 -10.65603 -10.37031 -10.33668 -10.27271 -10.25767 -9.95859 -9.63934 -9.33132 -8.75934 -8.66888 -8.48042 -6.79353 -5.69211 -2.94880 1.61807 1.81417 2.53506 2.93476 3.08427 3.48331 3.54509 3.56592 3.61369 4.24988 4.52789 4.63581 4.75432 4.78862 4.85613 4.86748 4.89057 5.02998 5.14110 5.14432 5.21249 5.50498 5.57338 5.58060 5.65744 5.68060 5.72746 5.80847 5.81750 5.89690 5.99294 6.01710 6.07126 6.11121 6.24655 6.35597 6.38913 6.41259 6.48099 6.60431 6.66768 6.98442 7.19843 7.48862 7.79664 7.91241 7.95331 8.50543 8.67514 9.62086 10.20714 10.56679 11.54151 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.008872 B = 0.003552 C = 0.002708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3155.251719 B = 7881.976547 C =10339.140872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.565 5.565 3 C 0.246 3.754 4 N -0.271 5.271 5 N -0.447 5.447 6 C 0.178 3.822 7 C -0.159 4.159 8 C 0.531 3.469 9 O -0.535 6.535 10 N -0.704 5.704 11 C 0.170 3.830 12 C 0.146 3.854 13 N -0.725 5.725 14 C -0.227 4.227 15 H 0.068 0.932 16 C -0.017 4.017 17 N -0.936 5.936 18 Si 0.904 3.096 19 H -0.281 1.281 20 H -0.293 1.293 21 H -0.293 1.293 22 C -0.124 4.124 23 C -0.122 4.122 24 C -0.125 4.125 25 C -0.119 4.119 26 C 0.641 3.359 27 O -0.556 6.556 28 H 0.071 0.929 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.230 0.770 32 H 0.102 0.898 33 H 0.107 0.893 34 H 0.102 0.898 35 H 0.092 0.908 36 H 0.397 0.603 37 H 0.045 0.955 38 H 0.019 0.981 39 H 0.381 0.619 40 H 0.252 0.748 41 H 0.073 0.927 42 H 0.071 0.929 43 H 0.060 0.940 44 H 0.057 0.943 45 H 0.063 0.937 46 H 0.061 0.939 47 H 0.083 0.917 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.336 -3.485 1.897 20.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.294 5.294 3 C -0.053 4.053 4 N -0.092 5.092 5 N -0.268 5.268 6 C 0.057 3.943 7 C -0.201 4.201 8 C 0.316 3.684 9 O -0.412 6.412 10 N -0.355 5.355 11 C 0.084 3.916 12 C 0.018 3.982 13 N -0.369 5.369 14 C -0.358 4.358 15 H 0.086 0.914 16 C -0.212 4.212 17 N -0.586 5.586 18 Si 0.736 3.264 19 H -0.206 1.206 20 H -0.221 1.221 21 H -0.220 1.220 22 C -0.163 4.163 23 C -0.160 4.160 24 C -0.162 4.162 25 C -0.157 4.157 26 C 0.341 3.659 27 O -0.430 6.430 28 H 0.090 0.910 29 H 0.106 0.894 30 H 0.105 0.895 31 H 0.246 0.754 32 H 0.120 0.880 33 H 0.125 0.875 34 H 0.120 0.880 35 H 0.110 0.890 36 H 0.230 0.770 37 H 0.063 0.937 38 H 0.036 0.964 39 H 0.215 0.785 40 H 0.062 0.938 41 H 0.092 0.908 42 H 0.090 0.910 43 H 0.079 0.921 44 H 0.076 0.924 45 H 0.082 0.918 46 H 0.080 0.920 47 H 0.102 0.898 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -19.069 -4.304 2.793 19.747 hybrid contribution -0.374 0.996 -0.430 1.148 sum -19.443 -3.308 2.362 19.863 Atomic orbital electron populations 1.21792 0.74400 1.04629 1.03415 1.45955 1.08827 1.06789 1.67853 1.25963 0.85871 0.94705 0.98772 1.77121 1.17998 0.92138 1.21926 1.49108 1.06274 1.03078 1.68320 1.21222 0.83146 0.93402 0.96519 1.22012 0.97242 1.01854 0.98959 1.19942 0.84377 0.79964 0.84112 1.90679 1.62946 1.56397 1.31181 1.45767 1.34060 1.47417 1.08250 1.21361 0.86452 0.88115 0.95702 1.21075 0.91843 0.88185 0.97132 1.42192 1.43151 1.15841 1.35667 1.19283 1.09811 0.97465 1.09283 0.91365 1.24666 1.00171 0.97938 0.98441 1.69653 1.43714 1.21164 1.24104 0.86140 0.81470 0.80681 0.78117 1.20646 1.22071 1.22005 1.22433 1.02070 0.94035 0.97721 1.22135 1.00721 0.98262 0.94902 1.22393 0.99114 0.97574 0.97160 1.22725 0.99588 0.98371 0.94997 1.16817 0.82221 0.85101 0.81805 1.91083 1.77786 1.15189 1.58918 0.90993 0.89379 0.89497 0.75365 0.87966 0.87483 0.87951 0.88997 0.76961 0.93684 0.96368 0.78550 0.93835 0.90835 0.90980 0.92072 0.92384 0.91840 0.91978 0.89820 0.90659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.50 11.05 59.85 0.66 1.16 16 2 N -0.56 -5.25 3.14 -130.10 -0.41 -5.66 16 3 C 0.25 1.96 12.66 -89.11 -1.13 0.83 16 4 N -0.27 -3.36 12.53 29.87 0.37 -2.98 16 5 N -0.45 -6.22 3.63 -65.12 -0.24 -6.46 16 6 C 0.18 2.59 5.68 -4.04 -0.02 2.56 16 7 C -0.16 -2.26 6.03 -27.88 -0.17 -2.43 16 8 C 0.53 9.00 6.99 -10.98 -0.08 8.93 16 9 O -0.53 -10.68 12.97 5.56 0.07 -10.61 16 10 N -0.70 -11.19 4.60 -46.08 -0.21 -11.41 16 11 C 0.17 2.82 0.39 -130.16 -0.05 2.77 16 12 C 0.15 3.13 4.84 -4.04 -0.02 3.11 16 13 N -0.72 -18.48 5.30 -59.90 -0.32 -18.80 16 14 C -0.23 -6.53 9.99 -15.06 -0.15 -6.68 16 15 H 0.07 1.96 7.83 -52.48 -0.41 1.55 16 16 C -0.02 -0.50 5.50 -17.43 -0.10 -0.59 16 17 N -0.94 -28.30 13.06 55.49 0.72 -27.58 16 18 Si 0.90 23.05 29.55 -169.99 -5.02 18.02 16 19 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 20 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 21 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 22 C -0.12 -1.85 5.67 -25.61 -0.15 -1.99 16 23 C -0.12 -1.49 6.80 -25.62 -0.17 -1.66 16 24 C -0.12 -1.48 6.79 -25.09 -0.17 -1.65 16 25 C -0.12 -1.75 5.62 -24.75 -0.14 -1.88 16 26 C 0.64 8.90 8.60 -86.74 -0.75 8.15 16 27 O -0.56 -9.41 17.71 5.09 0.09 -9.32 16 28 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 30 H 0.09 0.52 8.08 -51.93 -0.42 0.10 16 31 H 0.23 0.54 8.06 -52.49 -0.42 0.11 16 32 H 0.10 1.52 8.07 -51.93 -0.42 1.10 16 33 H 0.11 1.66 8.10 -51.93 -0.42 1.24 16 34 H 0.10 1.48 8.14 -51.93 -0.42 1.06 16 35 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.40 5.53 8.48 -40.82 -0.35 5.18 16 37 H 0.05 1.08 6.53 -51.93 -0.34 0.74 16 38 H 0.02 0.40 8.04 -51.93 -0.42 -0.02 16 39 H 0.38 9.95 7.27 -40.82 -0.30 9.65 16 40 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 41 H 0.07 1.19 6.41 -51.92 -0.33 0.86 16 42 H 0.07 1.08 7.84 -51.93 -0.41 0.67 16 43 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 45 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.08 1.27 7.98 -51.93 -0.41 0.86 16 48 H 0.07 1.15 8.06 -51.93 -0.42 0.74 16 LS Contribution 394.60 15.07 5.95 5.95 Total: -1.00 -37.76 394.60 -9.00 -46.76 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: -7.58 Total: 11.45 kcal Atomic # 6 Polarization: 13.06 SS G_CDS: -2.43 Total: 10.64 kcal Atomic # 7 Polarization: -72.81 SS G_CDS: -0.08 Total: -72.89 kcal Atomic # 8 Polarization: -20.09 SS G_CDS: 0.16 Total: -19.93 kcal Atomic # 14 Polarization: 23.05 SS G_CDS: -5.02 Total: 18.02 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -37.76 -9.00 -46.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267840616.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.191 kcal (2) G-P(sol) polarization free energy of solvation -37.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds