Wall clock time and date at job start Tue Mar 31 2020 21:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.37362 * 125.82984 * 2 1 4 4 N 1.29403 * 108.82803 * 179.76982 * 3 2 1 5 5 N 1.40174 * 108.13810 * 0.38357 * 4 3 2 6 6 C 1.46499 * 126.35011 * 179.87525 * 5 4 3 7 7 C 1.53000 * 109.47294 * 269.69301 * 6 5 4 8 8 C 1.50706 * 109.47081 * 179.97438 * 7 6 5 9 9 O 1.21276 * 119.99929 * 359.97438 * 8 7 6 10 10 N 1.34776 * 119.99959 * 179.97438 * 8 7 6 11 11 C 1.46494 * 120.00014 * 185.03291 * 10 8 7 12 12 C 1.53003 * 110.54211 * 296.79463 * 11 10 8 13 13 N 1.46504 * 109.46833 * 306.66304 * 12 11 10 14 14 C 1.36935 * 119.99662 * 174.95158 * 13 12 11 15 15 H 1.08004 * 120.00103 * 359.97438 * 14 13 12 16 16 C 1.38812 * 119.99972 * 179.97438 * 14 13 12 17 17 N 1.31616 * 119.99998 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00183 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46958 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.46848 * 119.99903 * 18 16 14 21 21 H 1.48494 * 109.47491 * 239.99858 * 18 16 14 22 22 C 1.54263 * 110.48884 * 59.40846 * 11 10 8 23 23 C 1.53877 * 106.59863 * 95.06622 * 22 11 10 24 24 C 1.54260 * 106.60069 * 0.02562 * 23 22 11 25 25 C 1.54889 * 110.48686 * 174.18310 * 11 10 8 26 26 C 1.34811 * 125.83307 * 180.02562 * 2 1 3 27 27 O 1.21810 * 126.30228 * 359.97438 * 26 2 1 28 28 H 1.09002 * 109.47443 * 269.98016 * 1 2 3 29 29 H 1.09005 * 109.46543 * 29.97851 * 1 2 3 30 30 H 1.08995 * 109.46906 * 149.97405 * 1 2 3 31 31 H 1.07999 * 125.58743 * 0.02562 * 3 2 1 32 32 H 1.08999 * 109.47445 * 149.68736 * 6 5 4 33 33 H 1.09004 * 109.46826 * 29.68944 * 6 5 4 34 34 H 1.08997 * 109.47557 * 59.99869 * 7 6 5 35 35 H 1.09004 * 109.46892 * 299.99602 * 7 6 5 36 36 H 0.97002 * 119.99743 * 5.03315 * 10 8 7 37 37 H 1.09002 * 109.46944 * 66.65976 * 12 11 10 38 38 H 1.08995 * 109.47374 * 186.66028 * 12 11 10 39 39 H 0.96996 * 120.00259 * 354.94640 * 13 12 11 40 40 H 0.97000 * 120.00654 * 179.97438 * 17 16 14 41 41 H 1.09010 * 110.03004 * 335.78483 * 22 11 10 42 42 H 1.08996 * 110.03499 * 214.35220 * 22 11 10 43 43 H 1.08996 * 110.03257 * 119.28899 * 23 22 11 44 44 H 1.09003 * 110.03010 * 240.71563 * 23 22 11 45 45 H 1.08997 * 110.48746 * 142.28907 * 24 23 22 46 46 H 1.09002 * 110.48534 * 264.93266 * 24 23 22 47 47 H 1.09002 * 110.75606 * 160.94990 * 25 11 10 48 48 H 1.08998 * 110.75885 * 37.57629 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2691 1.1137 0.0000 4 7 3.5066 0.7353 0.0049 5 7 3.5344 -0.6662 -0.0006 6 6 4.7313 -1.5109 -0.0004 7 6 5.1479 -1.8055 -1.4428 8 6 6.3796 -2.6740 -1.4424 9 8 6.8755 -3.0225 -0.3920 10 7 6.9299 -3.0634 -2.6095 11 6 8.0595 -3.9961 -2.6115 12 6 9.2701 -3.3747 -1.9121 13 7 9.5656 -2.0716 -2.5130 14 6 10.5474 -1.2791 -1.9809 15 1 11.1036 -1.6145 -1.1180 16 6 10.8277 -0.0447 -2.5506 17 7 10.1502 0.3638 -3.6024 18 14 12.1665 1.0368 -1.8243 19 1 12.7745 0.3534 -0.6545 20 1 13.2115 1.2864 -2.8495 21 1 11.5782 2.3299 -1.3921 22 6 7.6653 -5.3232 -1.9310 23 6 7.2302 -6.2808 -3.0541 24 6 7.3759 -5.5025 -4.3780 25 6 8.4219 -4.4054 -4.0607 26 6 2.2542 -1.0929 -0.0005 27 8 1.8805 -2.2523 -0.0006 28 1 -0.3634 -0.0004 1.0277 29 1 -0.3632 0.8902 -0.5135 30 1 -0.3633 -0.8897 -0.5142 31 1 1.9249 2.1374 0.0004 32 1 4.5151 -2.4473 0.5139 33 1 5.5414 -0.9930 0.5132 34 1 5.3643 -0.8692 -1.9570 35 1 4.3379 -2.3234 -1.9563 36 1 6.5779 -2.7260 -3.4481 37 1 9.0503 -3.2446 -0.8524 38 1 10.1325 -4.0314 -2.0263 39 1 9.0658 -1.7703 -3.2878 40 1 10.3458 1.2265 -4.0003 41 1 6.8382 -5.1573 -1.2405 42 1 8.5205 -5.7376 -1.3973 43 1 7.8743 -7.1600 -3.0655 44 1 6.1921 -6.5798 -2.9086 45 1 7.7390 -6.1592 -5.1686 46 1 6.4251 -5.0515 -4.6620 47 1 9.4326 -4.8111 -4.1063 48 1 8.3130 -3.5598 -4.7397 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267840616.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:45 Heat of formation + Delta-G solvation = -7.680828 kcal Electronic energy + Delta-G solvation = -30056.807786 eV Core-core repulsion = 25955.002259 eV Total energy + Delta-G solvation = -4101.805527 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.41425 -41.41080 -38.98754 -38.41527 -36.63376 -36.18294 -34.44866 -33.78572 -32.96683 -31.02337 -29.77644 -29.53736 -28.25715 -26.38683 -25.71220 -23.99022 -23.39731 -22.31666 -21.72445 -21.28810 -20.33944 -19.14230 -18.81121 -18.01686 -17.63200 -17.28632 -17.08394 -16.75128 -16.47698 -16.35559 -15.91608 -15.74283 -15.57886 -15.05964 -14.91367 -14.56882 -14.44965 -14.29333 -13.95997 -13.85950 -13.67008 -13.48876 -13.23198 -13.18600 -12.86325 -12.83396 -12.55260 -12.37507 -12.33701 -12.14631 -12.08372 -11.92292 -11.75631 -11.67103 -11.37607 -11.29005 -11.12338 -10.99751 -10.59733 -9.90080 -9.67512 -8.93638 -7.94078 -5.19915 0.72333 1.09469 1.45060 1.45998 1.54073 1.55885 1.70632 2.13607 2.39515 2.56307 3.38240 3.43999 3.50365 3.67248 3.71283 3.86248 3.95410 4.00102 4.11560 4.19100 4.28340 4.32407 4.41439 4.54089 4.55228 4.60249 4.66556 4.67912 4.70647 4.81882 4.83058 4.90576 4.93687 4.94791 5.09076 5.10070 5.12206 5.18566 5.29911 5.33952 5.47590 5.51254 5.68922 5.76335 6.28779 6.63120 6.63321 6.92992 7.33539 7.36292 8.10558 8.39523 9.28988 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.008872 B = 0.003552 C = 0.002708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3155.251719 B = 7881.976547 C =10339.140872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.558 5.558 3 C 0.279 3.721 4 N -0.323 5.323 5 N -0.457 5.457 6 C 0.184 3.816 7 C -0.142 4.142 8 C 0.524 3.476 9 O -0.570 6.570 10 N -0.698 5.698 11 C 0.171 3.829 12 C 0.148 3.852 13 N -0.728 5.728 14 C -0.241 4.241 15 H 0.061 0.939 16 C -0.068 4.068 17 N -0.962 5.962 18 Si 0.967 3.033 19 H -0.275 1.275 20 H -0.289 1.289 21 H -0.292 1.292 22 C -0.120 4.120 23 C -0.115 4.115 24 C -0.113 4.113 25 C -0.116 4.116 26 C 0.627 3.373 27 O -0.598 6.598 28 H 0.085 0.915 29 H 0.132 0.868 30 H 0.073 0.927 31 H 0.290 0.710 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.101 0.899 35 H 0.108 0.892 36 H 0.407 0.593 37 H 0.017 0.983 38 H 0.018 0.982 39 H 0.377 0.623 40 H 0.251 0.749 41 H 0.058 0.942 42 H 0.066 0.934 43 H 0.076 0.924 44 H 0.069 0.931 45 H 0.085 0.915 46 H 0.073 0.927 47 H 0.077 0.923 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.027 -2.682 0.994 22.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.285 5.285 3 C -0.018 4.018 4 N -0.144 5.144 5 N -0.277 5.277 6 C 0.063 3.937 7 C -0.183 4.183 8 C 0.311 3.689 9 O -0.449 6.449 10 N -0.349 5.349 11 C 0.084 3.916 12 C 0.020 3.980 13 N -0.371 5.371 14 C -0.373 4.373 15 H 0.079 0.921 16 C -0.261 4.261 17 N -0.613 5.613 18 Si 0.797 3.203 19 H -0.199 1.199 20 H -0.216 1.216 21 H -0.220 1.220 22 C -0.159 4.159 23 C -0.153 4.153 24 C -0.151 4.151 25 C -0.154 4.154 26 C 0.326 3.674 27 O -0.475 6.475 28 H 0.103 0.897 29 H 0.150 0.850 30 H 0.092 0.908 31 H 0.305 0.695 32 H 0.110 0.890 33 H 0.108 0.892 34 H 0.120 0.880 35 H 0.127 0.873 36 H 0.243 0.757 37 H 0.035 0.965 38 H 0.036 0.964 39 H 0.210 0.790 40 H 0.060 0.940 41 H 0.076 0.924 42 H 0.084 0.916 43 H 0.095 0.905 44 H 0.088 0.912 45 H 0.103 0.897 46 H 0.091 0.909 47 H 0.096 0.904 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -20.799 -3.486 1.877 21.173 hybrid contribution 0.092 0.809 -0.084 0.818 sum -20.708 -2.677 1.793 20.957 Atomic orbital electron populations 1.22186 0.71621 1.06187 1.04827 1.46194 1.10252 1.05764 1.66320 1.27164 0.84293 0.96197 0.94163 1.77140 1.20717 0.90805 1.25724 1.49008 1.05955 1.04066 1.68632 1.20934 0.83356 0.93072 0.96378 1.21860 0.96280 1.01178 0.98956 1.20442 0.84896 0.79802 0.83802 1.90662 1.64079 1.57748 1.32434 1.45737 1.33483 1.47096 1.08552 1.21302 0.84818 0.88526 0.96926 1.21118 0.94124 0.86805 0.95926 1.42242 1.42461 1.16867 1.35493 1.19547 1.10429 0.98235 1.09133 0.92070 1.25397 1.02488 0.99139 0.99081 1.69777 1.45000 1.21408 1.25089 0.85166 0.78923 0.78665 0.77574 1.19946 1.21593 1.21956 1.22374 1.01275 0.93743 0.98470 1.22104 1.01709 0.97883 0.93554 1.22351 0.98548 0.96655 0.97508 1.22680 1.00396 0.99214 0.93069 1.17095 0.82662 0.85626 0.82040 1.91033 1.78480 1.17084 1.60886 0.89687 0.84972 0.90804 0.69526 0.89045 0.89227 0.88047 0.87339 0.75695 0.96534 0.96437 0.79014 0.94026 0.92370 0.91571 0.90522 0.91192 0.89679 0.90876 0.90422 0.91387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.65 11.05 127.77 1.41 2.06 16 2 N -0.56 -9.22 3.14 -683.69 -2.15 -11.37 16 3 C 0.28 3.62 12.66 179.82 2.28 5.90 16 4 N -0.32 -7.70 12.53 -59.41 -0.74 -8.45 16 5 N -0.46 -12.96 3.63 -478.02 -1.73 -14.69 16 6 C 0.18 5.70 5.68 86.38 0.49 6.19 16 7 C -0.14 -4.15 6.03 29.85 0.18 -3.97 16 8 C 0.52 18.48 6.99 87.66 0.61 19.10 16 9 O -0.57 -24.07 12.97 -3.02 -0.04 -24.11 16 10 N -0.70 -22.53 4.60 -418.08 -1.92 -24.45 16 11 C 0.17 5.75 0.39 4.68 0.00 5.75 16 12 C 0.15 6.59 4.84 86.38 0.42 7.00 16 13 N -0.73 -38.12 5.30 -343.44 -1.82 -39.94 16 14 C -0.24 -14.17 9.99 84.03 0.84 -13.33 16 15 H 0.06 3.60 7.83 -2.91 -0.02 3.58 16 16 C -0.07 -4.02 5.50 84.86 0.47 -3.56 16 17 N -0.96 -58.56 13.06 21.65 0.28 -58.28 16 18 Si 0.97 47.74 29.55 68.60 2.03 49.77 16 19 H -0.27 -13.12 7.11 99.48 0.71 -12.41 16 20 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 21 H -0.29 -14.36 7.11 99.48 0.71 -13.65 16 22 C -0.12 -3.57 5.67 31.32 0.18 -3.39 16 23 C -0.11 -2.54 6.80 31.32 0.21 -2.33 16 24 C -0.11 -2.39 6.79 31.66 0.21 -2.17 16 25 C -0.12 -3.30 5.62 31.88 0.18 -3.12 16 26 C 0.63 17.40 8.60 178.99 1.54 18.94 16 27 O -0.60 -20.78 17.71 -4.70 -0.08 -20.86 16 28 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 29 H 0.13 -0.21 8.14 -2.38 -0.02 -0.23 16 30 H 0.07 0.77 8.08 -2.39 -0.02 0.75 16 31 H 0.29 -0.24 8.06 -2.91 -0.02 -0.26 16 32 H 0.09 2.95 8.07 -2.39 -0.02 2.93 16 33 H 0.09 3.02 8.10 -2.38 -0.02 3.00 16 34 H 0.10 3.01 8.14 -2.39 -0.02 2.99 16 35 H 0.11 2.80 8.14 -2.38 -0.02 2.78 16 36 H 0.41 11.28 8.48 -92.71 -0.79 10.50 16 37 H 0.02 0.84 6.53 -2.39 -0.02 0.82 16 38 H 0.02 0.79 8.04 -2.39 -0.02 0.77 16 39 H 0.38 20.12 7.27 -92.71 -0.67 19.45 16 40 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 41 H 0.06 1.92 6.41 -2.38 -0.02 1.91 16 42 H 0.07 2.02 7.84 -2.39 -0.02 2.00 16 43 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 44 H 0.07 1.42 8.14 -2.39 -0.02 1.41 16 45 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 46 H 0.07 1.41 8.14 -2.39 -0.02 1.40 16 47 H 0.08 2.31 7.98 -2.39 -0.02 2.29 16 48 H 0.07 2.04 8.06 -2.39 -0.02 2.02 16 Total: -1.00 -85.61 394.60 2.36 -83.25 By element: Atomic # 1 Polarization: 36.56 SS G_CDS: -0.48 Total: 36.09 kcal Atomic # 6 Polarization: 24.04 SS G_CDS: 9.02 Total: 33.06 kcal Atomic # 7 Polarization: -149.10 SS G_CDS: -8.09 Total: -157.19 kcal Atomic # 8 Polarization: -44.85 SS G_CDS: -0.12 Total: -44.97 kcal Atomic # 14 Polarization: 47.74 SS G_CDS: 2.03 Total: 49.77 kcal Total: -85.61 2.36 -83.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267840616.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.566 kcal (2) G-P(sol) polarization free energy of solvation -85.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds