Wall clock time and date at job start Tue Mar 31 2020 21:26:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36933 * 120.00294 * 2 1 4 4 H 1.07997 * 119.99996 * 204.73674 * 3 2 1 5 5 C 1.38812 * 119.99743 * 24.73957 * 3 2 1 6 6 N 1.31619 * 120.00254 * 12.85287 * 5 3 2 7 7 Si 1.86803 * 119.99969 * 192.84492 * 5 3 2 8 8 H 1.48506 * 109.46449 * 90.00183 * 7 5 3 9 9 H 1.48499 * 109.47356 * 210.00141 * 7 5 3 10 10 H 1.48498 * 109.46998 * 330.00530 * 7 5 3 11 11 C 1.46501 * 119.99607 * 180.02562 * 2 1 3 12 12 C 1.52991 * 109.47557 * 89.99746 * 11 2 1 13 13 N 1.46501 * 109.47557 * 179.97438 * 12 11 2 14 14 C 1.46501 * 120.00132 * 89.99815 * 13 12 11 15 15 C 1.34780 * 119.99786 * 270.00121 * 13 12 11 16 16 O 1.21590 * 120.00077 * 5.41251 * 15 13 12 17 17 C 1.47526 * 119.99667 * 185.40652 * 15 13 12 18 18 C 1.36597 * 125.76897 * 186.26727 * 17 15 13 19 19 N 1.34806 * 106.84137 * 179.90351 * 18 17 15 20 20 C 1.46500 * 126.59693 * 180.15559 * 19 18 17 21 21 C 1.53176 * 109.54308 * 35.09303 * 20 19 18 22 22 C 1.53104 * 109.15599 * 183.24544 * 21 20 19 23 23 O 1.42897 * 109.49022 * 57.47494 * 22 21 20 24 24 C 1.42909 * 114.09163 * 298.88596 * 23 22 21 25 25 C 1.53081 * 109.41557 * 61.16372 * 24 23 22 26 26 N 1.40215 * 106.80881 * 0.35623 * 19 18 17 27 27 N 1.28758 * 108.36435 * 359.77856 * 26 19 18 28 28 H 1.09003 * 109.46922 * 275.04160 * 1 2 3 29 29 H 1.09001 * 109.46741 * 35.03716 * 1 2 3 30 30 H 1.09002 * 109.47283 * 155.04084 * 1 2 3 31 31 H 0.97001 * 120.00514 * 179.97438 * 6 5 3 32 32 H 1.09003 * 109.47219 * 329.99043 * 11 2 1 33 33 H 1.09005 * 109.47061 * 210.00389 * 11 2 1 34 34 H 1.08999 * 109.47487 * 59.99917 * 12 11 2 35 35 H 1.09000 * 109.47529 * 299.99926 * 12 11 2 36 36 H 1.08995 * 109.47251 * 95.00375 * 14 13 12 37 37 H 1.09004 * 109.47052 * 215.00318 * 14 13 12 38 38 H 1.09001 * 109.46672 * 335.00387 * 14 13 12 39 39 H 1.08006 * 126.57696 * 0.04540 * 18 17 15 40 40 H 1.09002 * 109.54594 * 155.26474 * 20 19 18 41 41 H 1.09002 * 109.52394 * 303.05917 * 21 20 19 42 42 H 1.08996 * 109.52816 * 63.24764 * 21 20 19 43 43 H 1.09002 * 109.40286 * 297.48503 * 22 21 20 44 44 H 1.09003 * 109.48468 * 177.50301 * 22 21 20 45 45 H 1.08993 * 109.48203 * 301.17486 * 24 23 22 46 46 H 1.09006 * 109.47971 * 181.14281 * 24 23 22 47 47 H 1.09000 * 109.52583 * 182.48523 * 25 24 23 48 48 H 1.09003 * 109.58081 * 62.32152 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1858 0.0000 4 1 3.1554 1.2287 -0.3914 5 6 1.5513 2.3328 0.5031 6 7 0.4412 2.2424 1.2044 7 14 2.3215 4.0047 0.1850 8 1 1.7736 4.5705 -1.0740 9 1 2.0093 4.9166 1.3146 10 1 3.7938 3.8558 0.0612 11 6 2.1975 -1.2688 -0.0006 12 6 2.4524 -1.7099 -1.4431 13 7 3.1854 -2.9784 -1.4437 14 6 2.4533 -4.2474 -1.4440 15 6 4.5332 -2.9779 -1.4439 16 8 5.1407 -1.9294 -1.3443 17 6 5.2712 -4.2495 -1.5649 18 6 6.6246 -4.4005 -1.4579 19 7 6.8859 -5.7120 -1.6283 20 6 8.2035 -6.3516 -1.5944 21 6 9.0875 -5.6492 -0.5593 22 6 10.4862 -6.2712 -0.5884 23 8 11.0287 -6.1632 -1.9060 24 6 10.2685 -6.8426 -2.9073 25 6 8.8619 -6.2422 -2.9731 26 7 5.6547 -6.3455 -1.8490 27 7 4.7263 -5.4543 -1.8049 28 1 -0.3633 0.0903 1.0237 29 1 -0.3633 0.8415 -0.5900 30 1 -0.3634 -0.9317 -0.4336 31 1 0.0231 3.0439 1.5563 32 1 1.6084 -2.0286 0.5131 33 1 3.1499 -1.1387 0.5134 34 1 3.0415 -0.9502 -1.9568 35 1 1.5000 -1.8400 -1.9571 36 1 2.3492 -4.6066 -2.4678 37 1 3.0011 -4.9830 -0.8548 38 1 1.4651 -4.0968 -1.0095 39 1 7.3465 -3.6194 -1.2703 40 1 8.0921 -7.4021 -1.3258 41 1 9.1570 -4.5882 -0.7995 42 1 8.6537 -5.7712 0.4331 43 1 10.4211 -7.3222 -0.3070 44 1 11.1324 -5.7459 0.1149 45 1 10.2006 -7.9011 -2.6564 46 1 10.7579 -6.7290 -3.8747 47 1 8.2667 -6.7879 -3.7053 48 1 8.9256 -5.1936 -3.2641 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268254322.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:26:12 Heat of formation + Delta-G solvation = 55.182912 kcal Electronic energy + Delta-G solvation = -29261.165813 eV Core-core repulsion = 25162.086262 eV Total energy + Delta-G solvation = -4099.079551 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.49590 -40.02932 -39.20757 -36.02394 -35.90718 -34.77385 -32.06888 -31.91486 -31.55398 -30.84884 -28.51305 -26.40873 -26.07450 -25.74014 -24.53402 -24.09981 -22.70978 -22.49066 -20.71400 -20.51480 -19.55377 -17.91006 -16.91235 -16.77786 -16.54477 -16.23845 -16.11082 -15.79454 -15.48847 -15.00858 -14.98361 -14.67957 -14.33326 -14.25778 -13.75936 -13.39293 -13.19212 -13.04718 -12.74128 -12.60842 -12.43914 -12.43299 -12.25022 -12.14447 -11.91289 -11.79646 -11.31390 -11.23532 -10.97756 -10.79844 -10.77455 -10.52102 -10.43894 -10.38276 -10.16920 -9.87367 -9.74360 -9.69343 -9.41147 -8.59703 -8.26928 -6.62088 -5.63246 -3.11731 0.94055 1.66675 1.68166 3.16960 3.21330 3.42091 3.46249 3.51780 3.55160 3.62812 3.84516 4.04861 4.11481 4.17457 4.42805 4.44485 4.55460 4.60827 4.70699 4.79981 4.84488 4.94033 5.00699 5.07023 5.22876 5.27322 5.37069 5.45120 5.50729 5.53763 5.73941 5.76142 5.86547 6.08929 6.13125 6.24777 6.32733 6.46884 6.67906 6.74035 6.83869 7.08940 7.41488 7.62671 7.78951 7.80088 7.93780 8.38909 8.51242 9.33546 9.95654 10.44868 11.41486 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.017996 B = 0.002239 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.556329 B =12503.915416 C =13613.789003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.599 5.599 3 C -0.251 4.251 4 H 0.070 0.930 5 C 0.001 3.999 6 N -0.910 5.910 7 Si 0.904 3.096 8 H -0.288 1.288 9 H -0.292 1.292 10 H -0.278 1.278 11 C 0.142 3.858 12 C 0.095 3.905 13 N -0.596 5.596 14 C 0.085 3.915 15 C 0.593 3.407 16 O -0.531 6.531 17 C -0.090 4.090 18 C 0.092 3.908 19 N -0.358 5.358 20 C 0.152 3.848 21 C -0.173 4.173 22 C 0.067 3.933 23 O -0.378 6.378 24 C 0.066 3.934 25 C -0.169 4.169 26 N -0.074 5.074 27 N -0.201 5.201 28 H 0.032 0.968 29 H 0.039 0.961 30 H -0.002 1.002 31 H 0.251 0.749 32 H 0.034 0.966 33 H 0.051 0.949 34 H 0.083 0.917 35 H 0.070 0.930 36 H 0.056 0.944 37 H 0.079 0.921 38 H 0.068 0.932 39 H 0.202 0.798 40 H 0.114 0.886 41 H 0.089 0.911 42 H 0.091 0.909 43 H 0.058 0.942 44 H 0.108 0.892 45 H 0.058 0.942 46 H 0.105 0.895 47 H 0.088 0.912 48 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.213 -23.539 -6.615 30.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.323 5.323 3 C -0.381 4.381 4 H 0.088 0.912 5 C -0.197 4.197 6 N -0.555 5.555 7 Si 0.735 3.265 8 H -0.215 1.215 9 H -0.218 1.218 10 H -0.203 1.203 11 C 0.014 3.986 12 C -0.029 4.029 13 N -0.328 5.328 14 C -0.058 4.058 15 C 0.378 3.622 16 O -0.407 6.407 17 C -0.229 4.229 18 C -0.064 4.064 19 N -0.143 5.143 20 C 0.050 3.950 21 C -0.211 4.211 22 C -0.010 4.010 23 O -0.296 6.296 24 C -0.011 4.011 25 C -0.208 4.208 26 N -0.053 5.053 27 N -0.074 5.074 28 H 0.050 0.950 29 H 0.058 0.942 30 H 0.016 0.984 31 H 0.061 0.939 32 H 0.052 0.948 33 H 0.070 0.930 34 H 0.101 0.899 35 H 0.088 0.912 36 H 0.074 0.926 37 H 0.097 0.903 38 H 0.087 0.913 39 H 0.218 0.782 40 H 0.132 0.868 41 H 0.108 0.892 42 H 0.110 0.890 43 H 0.077 0.923 44 H 0.126 0.874 45 H 0.077 0.923 46 H 0.123 0.877 47 H 0.107 0.893 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 17.867 -24.074 -6.781 30.737 hybrid contribution 0.464 1.593 0.085 1.662 sum 18.332 -22.481 -6.696 29.770 Atomic orbital electron populations 1.20810 0.82674 0.95318 0.99541 1.43850 1.01763 1.00598 1.86040 1.19258 0.99329 0.85698 1.33822 0.91191 1.25063 0.98101 0.98643 0.97924 1.70065 1.20762 1.27362 1.37298 0.86243 0.78968 0.84110 0.77224 1.21533 1.21835 1.20338 1.20998 0.96541 0.88403 0.92674 1.22566 0.95378 0.83023 1.01963 1.47761 1.04977 1.08527 1.71552 1.21932 0.96874 0.84931 1.02089 1.16823 0.82132 0.85762 0.77505 1.90849 1.67923 1.31386 1.50541 1.21612 0.91746 0.94090 1.15430 1.23283 0.97788 0.87446 0.97917 1.50600 1.08937 1.06197 1.48609 1.21613 0.77173 0.98819 0.97372 1.22733 0.96474 1.02262 0.99673 1.22571 0.92807 1.00524 0.85131 1.88016 1.50158 1.75033 1.16386 1.22586 0.89942 0.95526 0.93095 1.22713 0.97710 1.04441 0.95939 1.81977 0.83785 1.17388 1.22153 1.74810 1.23496 0.98878 1.10236 0.94960 0.94231 0.98377 0.93864 0.94767 0.93029 0.89907 0.91184 0.92585 0.90290 0.91282 0.78175 0.86760 0.89248 0.89046 0.92329 0.87444 0.92325 0.87661 0.89306 0.89679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.06 8.99 59.85 0.54 4.60 16 2 N -0.60 -15.79 2.92 -181.12 -0.53 -16.32 16 3 C -0.25 -7.26 9.64 -15.06 -0.15 -7.41 16 4 H 0.07 2.04 7.86 -52.49 -0.41 1.62 16 5 C 0.00 0.02 5.10 -17.43 -0.09 -0.07 16 6 N -0.91 -27.39 10.81 55.49 0.60 -26.79 16 7 Si 0.90 22.78 29.57 -169.99 -5.03 17.75 16 8 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 9 H -0.29 -7.36 7.11 56.52 0.40 -6.95 16 10 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 11 C 0.14 3.16 5.97 -4.05 -0.02 3.13 16 12 C 0.09 1.82 5.67 -4.05 -0.02 1.80 16 13 N -0.60 -9.94 2.87 -182.82 -0.53 -10.47 16 14 C 0.09 1.14 9.28 59.85 0.56 1.69 16 15 C 0.59 10.23 7.65 -12.47 -0.10 10.13 16 16 O -0.53 -10.85 16.51 5.29 0.09 -10.76 16 17 C -0.09 -1.26 6.62 -83.55 -0.55 -1.81 16 18 C 0.09 1.00 10.40 -16.84 -0.18 0.83 16 19 N -0.36 -3.37 3.55 -54.38 -0.19 -3.56 16 20 C 0.15 0.87 3.31 -67.75 -0.22 0.65 16 21 C -0.17 -0.79 5.15 -26.59 -0.14 -0.92 16 22 C 0.07 0.26 6.84 37.21 0.25 0.51 16 23 O -0.38 -2.25 10.77 -35.23 -0.38 -2.63 16 24 C 0.07 0.26 6.84 37.20 0.25 0.52 16 25 C -0.17 -0.85 5.75 -26.60 -0.15 -1.00 16 26 N -0.07 -0.90 13.78 60.35 0.83 -0.07 16 27 N -0.20 -2.73 9.06 32.85 0.30 -2.43 16 28 H 0.03 0.88 7.31 -51.93 -0.38 0.50 16 29 H 0.04 1.06 7.45 -51.93 -0.39 0.67 16 30 H 0.00 -0.05 8.03 -51.93 -0.42 -0.47 16 31 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 32 H 0.03 0.71 8.07 -51.93 -0.42 0.29 16 33 H 0.05 1.24 8.04 -51.93 -0.42 0.82 16 34 H 0.08 1.79 7.50 -51.93 -0.39 1.40 16 35 H 0.07 1.26 8.07 -51.93 -0.42 0.84 16 36 H 0.06 0.70 8.13 -51.93 -0.42 0.27 16 37 H 0.08 1.04 5.90 -51.93 -0.31 0.73 16 38 H 0.07 0.85 8.03 -51.93 -0.42 0.43 16 39 H 0.20 1.76 7.27 -52.48 -0.38 1.38 16 40 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.09 0.45 7.09 -51.93 -0.37 0.08 16 42 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.06 0.15 8.14 -51.93 -0.42 -0.27 16 44 H 0.11 0.32 8.14 -51.93 -0.42 -0.11 16 45 H 0.06 0.16 8.14 -51.93 -0.42 -0.27 16 46 H 0.11 0.33 8.14 -51.93 -0.42 -0.10 16 47 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 390.56 15.07 5.89 5.89 Total: -1.00 -35.38 390.56 -6.62 -42.00 By element: Atomic # 1 Polarization: 2.39 SS G_CDS: -7.65 Total: -5.27 kcal Atomic # 6 Polarization: 12.66 SS G_CDS: -0.02 Total: 12.64 kcal Atomic # 7 Polarization: -60.11 SS G_CDS: 0.48 Total: -59.63 kcal Atomic # 8 Polarization: -13.10 SS G_CDS: -0.29 Total: -13.39 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -5.03 Total: 17.75 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -35.38 -6.62 -42.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268254322.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.188 kcal (2) G-P(sol) polarization free energy of solvation -35.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds