Wall clock time and date at job start Tue Mar 31 2020 21:26:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36933 * 120.00294 * 2 1 4 4 H 1.07997 * 119.99996 * 204.73674 * 3 2 1 5 5 C 1.38812 * 119.99743 * 24.73957 * 3 2 1 6 6 N 1.31619 * 120.00254 * 12.85287 * 5 3 2 7 7 Si 1.86803 * 119.99969 * 192.84492 * 5 3 2 8 8 H 1.48506 * 109.46449 * 90.00183 * 7 5 3 9 9 H 1.48499 * 109.47356 * 210.00141 * 7 5 3 10 10 H 1.48498 * 109.46998 * 330.00530 * 7 5 3 11 11 C 1.46501 * 119.99607 * 180.02562 * 2 1 3 12 12 C 1.52991 * 109.47557 * 89.99746 * 11 2 1 13 13 N 1.46501 * 109.47557 * 179.97438 * 12 11 2 14 14 C 1.46501 * 120.00132 * 89.99815 * 13 12 11 15 15 C 1.34780 * 119.99786 * 270.00121 * 13 12 11 16 16 O 1.21590 * 120.00077 * 5.41251 * 15 13 12 17 17 C 1.47526 * 119.99667 * 185.40652 * 15 13 12 18 18 C 1.36597 * 125.76897 * 186.26727 * 17 15 13 19 19 N 1.34806 * 106.84137 * 179.90351 * 18 17 15 20 20 C 1.46500 * 126.59693 * 180.15559 * 19 18 17 21 21 C 1.53176 * 109.54308 * 35.09303 * 20 19 18 22 22 C 1.53104 * 109.15599 * 183.24544 * 21 20 19 23 23 O 1.42897 * 109.49022 * 57.47494 * 22 21 20 24 24 C 1.42909 * 114.09163 * 298.88596 * 23 22 21 25 25 C 1.53081 * 109.41557 * 61.16372 * 24 23 22 26 26 N 1.40215 * 106.80881 * 0.35623 * 19 18 17 27 27 N 1.28758 * 108.36435 * 359.77856 * 26 19 18 28 28 H 1.09003 * 109.46922 * 275.04160 * 1 2 3 29 29 H 1.09001 * 109.46741 * 35.03716 * 1 2 3 30 30 H 1.09002 * 109.47283 * 155.04084 * 1 2 3 31 31 H 0.97001 * 120.00514 * 179.97438 * 6 5 3 32 32 H 1.09003 * 109.47219 * 329.99043 * 11 2 1 33 33 H 1.09005 * 109.47061 * 210.00389 * 11 2 1 34 34 H 1.08999 * 109.47487 * 59.99917 * 12 11 2 35 35 H 1.09000 * 109.47529 * 299.99926 * 12 11 2 36 36 H 1.08995 * 109.47251 * 95.00375 * 14 13 12 37 37 H 1.09004 * 109.47052 * 215.00318 * 14 13 12 38 38 H 1.09001 * 109.46672 * 335.00387 * 14 13 12 39 39 H 1.08006 * 126.57696 * 0.04540 * 18 17 15 40 40 H 1.09002 * 109.54594 * 155.26474 * 20 19 18 41 41 H 1.09002 * 109.52394 * 303.05917 * 21 20 19 42 42 H 1.08996 * 109.52816 * 63.24764 * 21 20 19 43 43 H 1.09002 * 109.40286 * 297.48503 * 22 21 20 44 44 H 1.09003 * 109.48468 * 177.50301 * 22 21 20 45 45 H 1.08993 * 109.48203 * 301.17486 * 24 23 22 46 46 H 1.09006 * 109.47971 * 181.14281 * 24 23 22 47 47 H 1.09000 * 109.52583 * 182.48523 * 25 24 23 48 48 H 1.09003 * 109.58081 * 62.32152 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1858 0.0000 4 1 3.1554 1.2287 -0.3914 5 6 1.5513 2.3328 0.5031 6 7 0.4412 2.2424 1.2044 7 14 2.3215 4.0047 0.1850 8 1 1.7736 4.5705 -1.0740 9 1 2.0093 4.9166 1.3146 10 1 3.7938 3.8558 0.0612 11 6 2.1975 -1.2688 -0.0006 12 6 2.4524 -1.7099 -1.4431 13 7 3.1854 -2.9784 -1.4437 14 6 2.4533 -4.2474 -1.4440 15 6 4.5332 -2.9779 -1.4439 16 8 5.1407 -1.9294 -1.3443 17 6 5.2712 -4.2495 -1.5649 18 6 6.6246 -4.4005 -1.4579 19 7 6.8859 -5.7120 -1.6283 20 6 8.2035 -6.3516 -1.5944 21 6 9.0875 -5.6492 -0.5593 22 6 10.4862 -6.2712 -0.5884 23 8 11.0287 -6.1632 -1.9060 24 6 10.2685 -6.8426 -2.9073 25 6 8.8619 -6.2422 -2.9731 26 7 5.6547 -6.3455 -1.8490 27 7 4.7263 -5.4543 -1.8049 28 1 -0.3633 0.0903 1.0237 29 1 -0.3633 0.8415 -0.5900 30 1 -0.3634 -0.9317 -0.4336 31 1 0.0231 3.0439 1.5563 32 1 1.6084 -2.0286 0.5131 33 1 3.1499 -1.1387 0.5134 34 1 3.0415 -0.9502 -1.9568 35 1 1.5000 -1.8400 -1.9571 36 1 2.3492 -4.6066 -2.4678 37 1 3.0011 -4.9830 -0.8548 38 1 1.4651 -4.0968 -1.0095 39 1 7.3465 -3.6194 -1.2703 40 1 8.0921 -7.4021 -1.3258 41 1 9.1570 -4.5882 -0.7995 42 1 8.6537 -5.7712 0.4331 43 1 10.4211 -7.3222 -0.3070 44 1 11.1324 -5.7459 0.1149 45 1 10.2006 -7.9011 -2.6564 46 1 10.7579 -6.7290 -3.8747 47 1 8.2667 -6.7879 -3.7053 48 1 8.9256 -5.1936 -3.2641 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268254322.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:26:11 Heat of formation + Delta-G solvation = 30.971935 kcal Electronic energy + Delta-G solvation = -29262.215679 eV Core-core repulsion = 25162.086262 eV Total energy + Delta-G solvation = -4100.129418 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.41155 -40.75629 -40.25206 -37.81353 -36.66263 -36.26947 -33.54161 -32.69798 -32.29162 -32.03201 -30.12551 -27.90242 -27.61139 -26.75808 -25.71292 -24.78287 -23.81435 -23.41785 -22.35283 -21.21216 -20.74380 -18.90871 -18.67263 -17.61187 -17.49774 -17.33012 -16.95200 -16.88934 -16.47433 -16.09965 -15.87894 -15.74400 -15.55997 -15.19751 -14.89907 -14.89061 -14.69893 -14.35180 -13.94670 -13.87269 -13.56311 -13.46479 -13.24818 -13.08368 -12.81805 -12.77891 -12.74492 -12.51925 -12.42329 -12.28085 -12.14428 -12.13569 -11.94386 -11.61303 -11.48025 -11.26013 -11.16966 -10.74516 -10.68995 -10.41222 -9.78052 -8.72582 -7.83396 -5.35328 0.05050 0.57798 0.92268 1.45376 1.46346 1.56336 1.93355 2.17423 2.51824 2.87905 3.03920 3.14260 3.28719 3.43065 3.52015 3.74496 3.77555 3.79430 3.86412 4.07375 4.10682 4.14972 4.21422 4.39961 4.40583 4.45627 4.51020 4.57554 4.63265 4.64734 4.76406 4.79781 4.85233 4.88372 4.94867 4.98173 5.03115 5.07955 5.15141 5.32773 5.36687 5.56271 5.65255 5.71157 6.17592 6.31028 6.35383 6.79624 7.08269 7.15464 7.85012 8.28042 9.18661 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.017996 B = 0.002239 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.556329 B =12503.915416 C =13613.789003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.174 3.826 2 N -0.616 5.616 3 C -0.263 4.263 4 H 0.059 0.941 5 C -0.050 4.050 6 N -0.936 5.936 7 Si 0.968 3.032 8 H -0.282 1.282 9 H -0.290 1.290 10 H -0.274 1.274 11 C 0.148 3.852 12 C 0.114 3.886 13 N -0.598 5.598 14 C 0.087 3.913 15 C 0.590 3.410 16 O -0.573 6.573 17 C -0.114 4.114 18 C 0.107 3.893 19 N -0.342 5.342 20 C 0.144 3.856 21 C -0.169 4.169 22 C 0.067 3.933 23 O -0.399 6.399 24 C 0.067 3.933 25 C -0.164 4.164 26 N -0.081 5.081 27 N -0.210 5.210 28 H 0.007 0.993 29 H 0.016 0.984 30 H 0.039 0.961 31 H 0.250 0.750 32 H 0.054 0.946 33 H 0.025 0.975 34 H 0.054 0.946 35 H 0.089 0.911 36 H 0.067 0.933 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.220 0.780 40 H 0.132 0.868 41 H 0.083 0.917 42 H 0.096 0.904 43 H 0.076 0.924 44 H 0.115 0.885 45 H 0.076 0.924 46 H 0.113 0.887 47 H 0.089 0.911 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.431 -25.434 -7.116 32.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.340 5.340 3 C -0.393 4.393 4 H 0.077 0.923 5 C -0.246 4.246 6 N -0.582 5.582 7 Si 0.796 3.204 8 H -0.209 1.209 9 H -0.216 1.216 10 H -0.199 1.199 11 C 0.021 3.979 12 C -0.011 4.011 13 N -0.329 5.329 14 C -0.055 4.055 15 C 0.377 3.623 16 O -0.452 6.452 17 C -0.253 4.253 18 C -0.051 4.051 19 N -0.126 5.126 20 C 0.044 3.956 21 C -0.208 4.208 22 C -0.010 4.010 23 O -0.318 6.318 24 C -0.010 4.010 25 C -0.203 4.203 26 N -0.061 5.061 27 N -0.083 5.083 28 H 0.025 0.975 29 H 0.035 0.965 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.072 0.928 33 H 0.043 0.957 34 H 0.072 0.928 35 H 0.107 0.893 36 H 0.086 0.914 37 H 0.101 0.899 38 H 0.101 0.899 39 H 0.236 0.764 40 H 0.149 0.851 41 H 0.101 0.899 42 H 0.115 0.885 43 H 0.094 0.906 44 H 0.133 0.867 45 H 0.094 0.906 46 H 0.131 0.869 47 H 0.107 0.893 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 19.100 -26.050 -7.299 33.116 hybrid contribution 0.189 2.038 0.242 2.061 sum 19.289 -24.012 -7.057 31.598 Atomic orbital electron populations 1.20603 0.82119 0.96406 0.97900 1.44069 1.02371 1.01271 1.86323 1.19410 0.99187 0.87189 1.33548 0.92289 1.25808 0.98817 1.01932 0.97998 1.70212 1.21870 1.28006 1.38158 0.85254 0.78260 0.79802 0.77083 1.20878 1.21618 1.19881 1.21030 0.95081 0.87335 0.94502 1.22058 0.95935 0.83739 0.99386 1.47795 1.05130 1.08706 1.71273 1.22078 0.97079 0.83250 1.03080 1.17229 0.82237 0.86408 0.76423 1.90817 1.68758 1.33160 1.52493 1.21249 0.92663 0.93172 1.18213 1.23510 0.97036 0.88382 0.96193 1.50856 1.09457 1.05591 1.46712 1.22047 0.75512 0.99607 0.98392 1.22737 0.96758 1.01855 0.99414 1.22692 0.92139 1.01642 0.84568 1.87994 1.50884 1.75561 1.17368 1.22685 0.88889 0.96190 0.93254 1.22680 0.98437 1.03856 0.95299 1.81897 0.84567 1.17347 1.22264 1.74770 1.24242 0.98648 1.10677 0.97482 0.96548 0.94234 0.94101 0.92804 0.95653 0.92790 0.89271 0.91413 0.89947 0.89897 0.76381 0.85065 0.89864 0.88530 0.90618 0.86655 0.90553 0.86911 0.89252 0.90881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.77 8.99 127.77 1.15 9.92 16 2 N -0.62 -32.75 2.92 -726.93 -2.12 -34.87 16 3 C -0.26 -15.48 9.64 84.03 0.81 -14.67 16 4 H 0.06 3.53 7.86 -2.91 -0.02 3.51 16 5 C -0.05 -2.96 5.10 84.86 0.43 -2.53 16 6 N -0.94 -57.16 10.81 21.65 0.23 -56.93 16 7 Si 0.97 47.38 29.57 68.60 2.03 49.41 16 8 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 9 H -0.29 -14.00 7.11 99.48 0.71 -13.30 16 10 H -0.27 -13.08 7.11 99.48 0.71 -12.37 16 11 C 0.15 6.57 5.97 86.38 0.52 7.08 16 12 C 0.11 4.34 5.67 86.38 0.49 4.83 16 13 N -0.60 -19.64 2.87 -850.57 -2.44 -22.09 16 14 C 0.09 2.18 9.28 127.77 1.19 3.36 16 15 C 0.59 20.49 7.65 86.69 0.66 21.16 16 16 O -0.57 -24.09 16.51 -4.00 -0.07 -24.16 16 17 C -0.11 -3.13 6.62 40.82 0.27 -2.86 16 18 C 0.11 2.21 10.40 83.85 0.87 3.09 16 19 N -0.34 -5.83 3.55 -325.97 -1.16 -6.99 16 20 C 0.14 1.33 3.31 45.11 0.15 1.48 16 21 C -0.17 -1.19 5.15 30.69 0.16 -1.03 16 22 C 0.07 0.36 6.84 72.02 0.49 0.85 16 23 O -0.40 -3.95 10.77 -148.98 -1.60 -5.56 16 24 C 0.07 0.39 6.84 72.01 0.49 0.88 16 25 C -0.16 -1.34 5.75 30.68 0.18 -1.16 16 26 N -0.08 -1.84 13.78 37.02 0.51 -1.33 16 27 N -0.21 -5.45 9.06 -50.00 -0.45 -5.91 16 28 H 0.01 0.38 7.31 -2.39 -0.02 0.36 16 29 H 0.02 0.86 7.45 -2.39 -0.02 0.84 16 30 H 0.04 1.63 8.03 -2.39 -0.02 1.61 16 31 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 32 H 0.05 2.16 8.07 -2.39 -0.02 2.14 16 33 H 0.02 1.24 8.04 -2.38 -0.02 1.22 16 34 H 0.05 2.39 7.50 -2.39 -0.02 2.37 16 35 H 0.09 3.06 8.07 -2.39 -0.02 3.04 16 36 H 0.07 1.55 8.13 -2.39 -0.02 1.53 16 37 H 0.08 2.04 5.90 -2.39 -0.01 2.03 16 38 H 0.08 1.83 8.03 -2.39 -0.02 1.81 16 39 H 0.22 3.62 7.27 -2.91 -0.02 3.60 16 40 H 0.13 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.08 0.71 7.09 -2.39 -0.02 0.69 16 42 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 43 H 0.08 0.16 8.14 -2.39 -0.02 0.14 16 44 H 0.12 0.44 8.14 -2.39 -0.02 0.42 16 45 H 0.08 0.18 8.14 -2.39 -0.02 0.16 16 46 H 0.11 0.47 8.14 -2.38 -0.02 0.45 16 47 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 48 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 Total: -1.00 -77.41 390.56 3.74 -73.67 By element: Atomic # 1 Polarization: 3.39 SS G_CDS: 0.95 Total: 4.34 kcal Atomic # 6 Polarization: 22.54 SS G_CDS: 7.86 Total: 30.40 kcal Atomic # 7 Polarization: -122.68 SS G_CDS: -5.43 Total: -128.11 kcal Atomic # 8 Polarization: -28.05 SS G_CDS: -1.67 Total: -29.72 kcal Atomic # 14 Polarization: 47.38 SS G_CDS: 2.03 Total: 49.41 kcal Total: -77.41 3.74 -73.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268254322.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.646 kcal (2) G-P(sol) polarization free energy of solvation -77.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds