Wall clock time and date at job start Tue Mar 31 2020 21:01:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46900 * 111.00236 * 2 1 4 4 C 1.53010 * 109.46965 * 66.04268 * 3 2 1 5 5 N 1.46500 * 109.46591 * 179.97438 * 4 3 2 6 6 C 1.46497 * 120.00231 * 269.99768 * 5 4 3 7 7 C 1.34781 * 119.99811 * 90.00374 * 5 4 3 8 8 O 1.21283 * 119.99929 * 359.97438 * 7 5 4 9 9 C 1.50700 * 119.99662 * 179.97438 * 7 5 4 10 10 C 1.50703 * 109.46568 * 179.97438 * 9 7 5 11 11 C 1.34669 * 126.59045 * 84.96050 * 10 9 7 12 12 N 1.34128 * 108.01780 * 180.02562 * 11 10 9 13 13 C 1.30495 * 109.25774 * 359.72199 * 12 11 10 14 14 N 1.35045 * 108.69990 * 0.44365 * 13 12 11 15 15 C 1.46499 * 126.39849 * 179.82112 * 14 13 12 16 16 C 1.46903 * 111.00257 * 236.04213 * 2 1 3 17 17 C 1.50699 * 109.47039 * 293.96187 * 16 2 1 18 18 O 1.21287 * 120.00045 * 359.97438 * 17 16 2 19 19 N 1.34779 * 119.99657 * 180.02562 * 17 16 2 20 20 C 1.37101 * 119.99780 * 179.97438 * 19 17 16 21 21 H 1.08002 * 119.99918 * 359.97438 * 20 19 17 22 22 C 1.38947 * 120.00087 * 179.97438 * 20 19 17 23 23 N 1.31419 * 119.99630 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00146 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47087 * 0.02562 * 24 22 20 26 26 H 1.48494 * 109.46985 * 120.00303 * 24 22 20 27 27 H 1.48500 * 109.46815 * 240.00208 * 24 22 20 28 28 H 1.09008 * 109.46716 * 60.00032 * 1 2 3 29 29 H 1.08999 * 109.47465 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47051 * 300.00602 * 1 2 3 31 31 H 1.08994 * 109.46977 * 306.04219 * 3 2 1 32 32 H 1.09004 * 109.47033 * 186.04005 * 3 2 1 33 33 H 1.09000 * 109.46688 * 59.99976 * 4 3 2 34 34 H 1.08996 * 109.47058 * 300.00055 * 4 3 2 35 35 H 1.09008 * 109.47202 * 270.00828 * 6 5 4 36 36 H 1.09007 * 109.46800 * 30.00158 * 6 5 4 37 37 H 1.08995 * 109.47340 * 150.00194 * 6 5 4 38 38 H 1.08996 * 109.47401 * 60.00184 * 9 7 5 39 39 H 1.09006 * 109.46986 * 299.99503 * 9 7 5 40 40 H 1.08000 * 125.99191 * 0.02748 * 11 10 9 41 41 H 1.07997 * 125.65170 * 180.29145 * 13 12 11 42 42 H 1.09002 * 109.47391 * 269.69091 * 15 14 13 43 43 H 1.09001 * 109.46813 * 149.69147 * 15 14 13 44 44 H 1.09004 * 109.47041 * 29.69274 * 15 14 13 45 45 H 1.09003 * 109.46401 * 53.95796 * 16 2 1 46 46 H 1.08992 * 109.46864 * 173.95729 * 16 2 1 47 47 H 0.96994 * 120.00031 * 359.97438 * 19 17 16 48 48 H 0.96998 * 119.99793 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6314 2.0575 1.3183 5 7 2.1570 3.4249 1.3185 6 6 3.5019 3.6927 1.8339 7 6 1.4032 4.4367 0.8445 8 8 0.2899 4.2149 0.4174 9 6 1.9437 5.8434 0.8452 10 6 0.9123 6.7780 0.2675 11 6 -0.1054 7.3593 0.9308 12 7 -0.7909 8.1144 0.0597 13 6 -0.2333 8.0277 -1.1169 14 7 0.8295 7.1988 -1.0324 15 6 1.7293 6.8246 -2.1262 16 6 1.9955 -0.7661 -1.1375 17 6 1.6368 -2.2204 -0.9728 18 8 1.0052 -2.5832 -0.0030 19 7 2.0189 -3.1182 -1.9027 20 6 1.6930 -4.4414 -1.7526 21 1 1.1306 -4.7645 -0.8890 22 6 2.0864 -5.3669 -2.7114 23 7 2.7712 -4.9738 -3.7619 24 14 1.6418 -7.1697 -2.5073 25 1 0.8735 -7.3507 -1.2495 26 1 0.8148 -7.6091 -3.6596 27 1 2.8835 -7.9823 -2.4507 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.5612 1.9273 -0.8309 32 1 3.0798 1.3443 -0.1081 33 1 2.0657 1.5015 2.1492 34 1 0.5472 2.0845 1.4265 35 1 3.4458 3.9087 2.9009 36 1 4.1334 2.8189 1.6729 37 1 3.9273 4.5496 1.3116 38 1 2.8499 5.8848 0.2410 39 1 2.1745 6.1435 1.8675 40 1 -0.3301 7.2387 1.9803 41 1 -0.5678 8.5331 -2.0108 42 1 1.3499 5.9294 -2.6188 43 1 2.7237 6.6257 -1.7266 44 1 1.7839 7.6405 -2.8470 45 1 1.5612 -0.3872 -2.0627 46 1 3.0797 -0.6612 -1.1755 47 1 2.5243 -2.8281 -2.6780 48 1 3.0461 -5.6199 -4.4312 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268254828.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:01:41 Heat of formation + Delta-G solvation = 12.143899 kcal Electronic energy + Delta-G solvation = -28816.326838 eV Core-core repulsion = 24715.380976 eV Total energy + Delta-G solvation = -4100.945862 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.37903 -40.09077 -38.59384 -36.77729 -35.48237 -34.35752 -33.85470 -32.69066 -31.25239 -30.05055 -27.79503 -27.49746 -27.28112 -26.83369 -25.16461 -23.89022 -21.72002 -21.44058 -20.49505 -19.32629 -19.08944 -17.84857 -17.53535 -17.35570 -16.54233 -16.17767 -15.84159 -15.78524 -15.19455 -14.82391 -14.67589 -14.52379 -14.09767 -13.98172 -13.78464 -13.59595 -13.37230 -13.33885 -13.25311 -13.19354 -12.95245 -12.83514 -12.56226 -12.51864 -12.09366 -11.96814 -11.51324 -11.31788 -11.22750 -10.94069 -10.78950 -10.34297 -10.22860 -10.21317 -10.13650 -9.81107 -9.48748 -9.00586 -8.59895 -8.42797 -7.98077 -7.86239 -6.41998 -3.82601 1.68587 2.33329 2.45960 2.70225 3.00617 3.16072 3.26634 3.34067 3.90513 4.05292 4.13985 4.25665 4.28914 4.34133 4.45050 4.51461 4.66463 4.76035 4.89645 4.91888 4.98468 5.00701 5.11044 5.14968 5.20532 5.26200 5.31678 5.48065 5.48615 5.67349 5.73038 5.79358 5.88940 5.96449 6.03672 6.05356 6.23372 6.29144 6.47519 6.60607 6.89890 7.07401 7.25901 7.37575 7.55434 7.83474 7.91170 8.06717 8.61888 9.18277 9.54485 10.06415 10.75910 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.022098 B = 0.001882 C = 0.001837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.782041 B =14874.771589 C =15239.235024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.516 5.516 3 C 0.043 3.957 4 C 0.118 3.882 5 N -0.616 5.616 6 C 0.075 3.925 7 C 0.509 3.491 8 O -0.521 6.521 9 C -0.062 4.062 10 C -0.011 4.011 11 C -0.007 4.007 12 N -0.494 5.494 13 C 0.183 3.817 14 N -0.455 5.455 15 C 0.070 3.930 16 C 0.047 3.953 17 C 0.445 3.555 18 O -0.576 6.576 19 N -0.565 5.565 20 C -0.297 4.297 21 H 0.104 0.896 22 C 0.021 3.979 23 N -0.903 5.903 24 Si 0.930 3.070 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.282 1.282 28 H 0.015 0.985 29 H 0.096 0.904 30 H 0.061 0.939 31 H 0.032 0.968 32 H 0.071 0.929 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.060 0.940 36 H 0.078 0.922 37 H 0.069 0.931 38 H 0.098 0.902 39 H 0.116 0.884 40 H 0.167 0.833 41 H 0.205 0.795 42 H 0.079 0.921 43 H 0.082 0.918 44 H 0.090 0.910 45 H 0.046 0.954 46 H 0.087 0.913 47 H 0.392 0.608 48 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.401 26.223 4.998 27.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.240 5.240 3 C -0.086 4.086 4 C -0.004 4.004 5 N -0.351 5.351 6 C -0.069 4.069 7 C 0.296 3.704 8 O -0.396 6.396 9 C -0.103 4.103 10 C -0.126 4.126 11 C -0.156 4.156 12 N -0.211 5.211 13 C -0.099 4.099 14 N -0.138 5.138 15 C -0.073 4.073 16 C -0.084 4.084 17 C 0.230 3.770 18 O -0.460 6.460 19 N -0.202 5.202 20 C -0.426 4.426 21 H 0.122 0.878 22 C -0.181 4.181 23 N -0.544 5.544 24 Si 0.757 3.243 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.208 1.208 28 H 0.033 0.967 29 H 0.114 0.886 30 H 0.080 0.920 31 H 0.050 0.950 32 H 0.089 0.911 33 H 0.107 0.893 34 H 0.105 0.895 35 H 0.079 0.921 36 H 0.096 0.904 37 H 0.088 0.912 38 H 0.116 0.884 39 H 0.134 0.866 40 H 0.184 0.816 41 H 0.221 0.779 42 H 0.097 0.903 43 H 0.101 0.899 44 H 0.108 0.892 45 H 0.064 0.936 46 H 0.105 0.895 47 H 0.225 0.775 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.996 25.930 5.762 26.862 hybrid contribution 0.834 -0.877 -1.610 2.014 sum 4.830 25.053 4.152 25.850 Atomic orbital electron populations 1.22574 0.86492 1.04318 0.99248 1.61530 1.08951 1.10755 1.42781 1.22416 0.99978 0.89299 0.96952 1.21494 1.00999 0.79801 0.98138 1.47873 1.16622 1.07784 1.62824 1.21876 0.83034 1.02648 0.99301 1.20534 0.85581 0.86449 0.77815 1.90770 1.19404 1.84320 1.45136 1.20056 0.96532 0.90265 1.03424 1.20402 1.02918 1.04572 0.84687 1.21977 0.94008 0.99731 0.99871 1.70269 1.28084 1.22714 1.00077 1.24902 0.88141 0.97754 0.99066 1.45206 1.24336 1.35914 1.08328 1.22057 0.93708 1.02610 0.88889 1.21853 1.00492 0.94196 0.91868 1.19718 0.85413 0.86591 0.85250 1.90485 1.43807 1.80117 1.31595 1.41874 1.49493 1.07377 1.21471 1.19752 1.32774 0.82236 1.07880 0.87835 1.25267 0.96880 1.00597 0.95324 1.69624 1.38206 1.35637 1.10961 0.85795 0.78189 0.81908 0.78436 1.19204 1.20801 1.20769 0.96670 0.88562 0.92000 0.95013 0.91054 0.89294 0.89483 0.92103 0.90371 0.91210 0.88409 0.86561 0.81618 0.77879 0.90262 0.89887 0.89170 0.93561 0.89521 0.77537 0.91966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 8.96 60.06 0.54 0.91 16 2 N -0.52 -8.78 4.50 -244.36 -1.10 -9.88 16 3 C 0.04 0.57 5.28 -3.82 -0.02 0.55 16 4 C 0.12 1.38 5.33 -4.04 -0.02 1.36 16 5 N -0.62 -5.59 2.87 -181.56 -0.52 -6.11 16 6 C 0.07 0.37 10.24 59.85 0.61 0.98 16 7 C 0.51 5.37 7.67 -10.98 -0.08 5.28 16 8 O -0.52 -8.05 15.61 5.55 0.09 -7.96 16 9 C -0.06 -0.42 4.59 -29.03 -0.13 -0.56 16 10 C -0.01 -0.11 5.45 -81.60 -0.44 -0.55 16 11 C -0.01 -0.08 11.79 -17.81 -0.21 -0.29 16 12 N -0.49 -6.22 11.25 -14.67 -0.17 -6.39 16 13 C 0.18 1.76 12.56 -90.38 -1.14 0.62 16 14 N -0.45 -3.95 3.15 -121.36 -0.38 -4.33 16 15 C 0.07 0.34 11.00 59.85 0.66 1.00 16 16 C 0.05 0.86 5.45 -4.97 -0.03 0.83 16 17 C 0.44 10.55 7.47 -10.98 -0.08 10.47 16 18 O -0.58 -15.54 13.91 5.55 0.08 -15.46 16 19 N -0.57 -14.36 5.29 -10.96 -0.06 -14.42 16 20 C -0.30 -8.28 9.68 -14.93 -0.14 -8.42 16 21 H 0.10 3.03 7.16 -52.49 -0.38 2.66 16 22 C 0.02 0.55 5.50 -17.47 -0.10 0.46 16 23 N -0.90 -24.57 13.05 55.50 0.72 -23.84 16 24 Si 0.93 21.09 29.55 -169.99 -5.02 16.06 16 25 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 26 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 27 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 28 H 0.01 0.25 8.14 -51.92 -0.42 -0.17 16 29 H 0.10 1.99 5.82 -51.93 -0.30 1.69 16 30 H 0.06 0.98 6.47 -51.93 -0.34 0.65 16 31 H 0.03 0.46 8.12 -51.93 -0.42 0.04 16 32 H 0.07 0.84 7.93 -51.93 -0.41 0.42 16 33 H 0.09 0.97 8.07 -51.93 -0.42 0.55 16 34 H 0.09 1.20 5.83 -51.93 -0.30 0.90 16 35 H 0.06 0.23 8.14 -51.92 -0.42 -0.19 16 36 H 0.08 0.38 8.07 -51.93 -0.42 -0.04 16 37 H 0.07 0.19 6.44 -51.93 -0.33 -0.15 16 38 H 0.10 0.42 6.35 -51.93 -0.33 0.09 16 39 H 0.12 0.52 8.11 -51.93 -0.42 0.10 16 40 H 0.17 1.64 8.06 -52.49 -0.42 1.21 16 41 H 0.20 1.16 8.06 -52.49 -0.42 0.73 16 42 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.08 0.27 7.12 -51.93 -0.37 -0.10 16 44 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 45 H 0.05 0.80 8.12 -51.93 -0.42 0.37 16 46 H 0.09 1.39 7.93 -51.93 -0.41 0.98 16 47 H 0.39 9.51 7.90 -40.82 -0.32 9.19 16 48 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 397.93 15.07 6.00 6.00 Total: -1.00 -37.58 397.93 -8.23 -45.81 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -7.27 Total: 7.89 kcal Atomic # 6 Polarization: 13.22 SS G_CDS: -0.59 Total: 12.64 kcal Atomic # 7 Polarization: -63.47 SS G_CDS: -1.50 Total: -64.97 kcal Atomic # 8 Polarization: -23.59 SS G_CDS: 0.16 Total: -23.42 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -37.58 -8.23 -45.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268254828.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.953 kcal (2) G-P(sol) polarization free energy of solvation -37.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds