Wall clock time and date at job start Tue Mar 31 2020 21:01:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46900 * 111.00236 * 2 1 4 4 C 1.53010 * 109.46965 * 66.04268 * 3 2 1 5 5 N 1.46500 * 109.46591 * 179.97438 * 4 3 2 6 6 C 1.46497 * 120.00231 * 269.99768 * 5 4 3 7 7 C 1.34781 * 119.99811 * 90.00374 * 5 4 3 8 8 O 1.21283 * 119.99929 * 359.97438 * 7 5 4 9 9 C 1.50700 * 119.99662 * 179.97438 * 7 5 4 10 10 C 1.50703 * 109.46568 * 179.97438 * 9 7 5 11 11 C 1.34669 * 126.59045 * 84.96050 * 10 9 7 12 12 N 1.34128 * 108.01780 * 180.02562 * 11 10 9 13 13 C 1.30495 * 109.25774 * 359.72199 * 12 11 10 14 14 N 1.35045 * 108.69990 * 0.44365 * 13 12 11 15 15 C 1.46499 * 126.39849 * 179.82112 * 14 13 12 16 16 C 1.46903 * 111.00257 * 236.04213 * 2 1 3 17 17 C 1.50699 * 109.47039 * 293.96187 * 16 2 1 18 18 O 1.21287 * 120.00045 * 359.97438 * 17 16 2 19 19 N 1.34779 * 119.99657 * 180.02562 * 17 16 2 20 20 C 1.37101 * 119.99780 * 179.97438 * 19 17 16 21 21 H 1.08002 * 119.99918 * 359.97438 * 20 19 17 22 22 C 1.38947 * 120.00087 * 179.97438 * 20 19 17 23 23 N 1.31419 * 119.99630 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00146 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47087 * 0.02562 * 24 22 20 26 26 H 1.48494 * 109.46985 * 120.00303 * 24 22 20 27 27 H 1.48500 * 109.46815 * 240.00208 * 24 22 20 28 28 H 1.09008 * 109.46716 * 60.00032 * 1 2 3 29 29 H 1.08999 * 109.47465 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47051 * 300.00602 * 1 2 3 31 31 H 1.08994 * 109.46977 * 306.04219 * 3 2 1 32 32 H 1.09004 * 109.47033 * 186.04005 * 3 2 1 33 33 H 1.09000 * 109.46688 * 59.99976 * 4 3 2 34 34 H 1.08996 * 109.47058 * 300.00055 * 4 3 2 35 35 H 1.09008 * 109.47202 * 270.00828 * 6 5 4 36 36 H 1.09007 * 109.46800 * 30.00158 * 6 5 4 37 37 H 1.08995 * 109.47340 * 150.00194 * 6 5 4 38 38 H 1.08996 * 109.47401 * 60.00184 * 9 7 5 39 39 H 1.09006 * 109.46986 * 299.99503 * 9 7 5 40 40 H 1.08000 * 125.99191 * 0.02748 * 11 10 9 41 41 H 1.07997 * 125.65170 * 180.29145 * 13 12 11 42 42 H 1.09002 * 109.47391 * 269.69091 * 15 14 13 43 43 H 1.09001 * 109.46813 * 149.69147 * 15 14 13 44 44 H 1.09004 * 109.47041 * 29.69274 * 15 14 13 45 45 H 1.09003 * 109.46401 * 53.95796 * 16 2 1 46 46 H 1.08992 * 109.46864 * 173.95729 * 16 2 1 47 47 H 0.96994 * 120.00031 * 359.97438 * 19 17 16 48 48 H 0.96998 * 119.99793 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6314 2.0575 1.3183 5 7 2.1570 3.4249 1.3185 6 6 3.5019 3.6927 1.8339 7 6 1.4032 4.4367 0.8445 8 8 0.2899 4.2149 0.4174 9 6 1.9437 5.8434 0.8452 10 6 0.9123 6.7780 0.2675 11 6 -0.1054 7.3593 0.9308 12 7 -0.7909 8.1144 0.0597 13 6 -0.2333 8.0277 -1.1169 14 7 0.8295 7.1988 -1.0324 15 6 1.7293 6.8246 -2.1262 16 6 1.9955 -0.7661 -1.1375 17 6 1.6368 -2.2204 -0.9728 18 8 1.0052 -2.5832 -0.0030 19 7 2.0189 -3.1182 -1.9027 20 6 1.6930 -4.4414 -1.7526 21 1 1.1306 -4.7645 -0.8890 22 6 2.0864 -5.3669 -2.7114 23 7 2.7712 -4.9738 -3.7619 24 14 1.6418 -7.1697 -2.5073 25 1 0.8735 -7.3507 -1.2495 26 1 0.8148 -7.6091 -3.6596 27 1 2.8835 -7.9823 -2.4507 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.5612 1.9273 -0.8309 32 1 3.0798 1.3443 -0.1081 33 1 2.0657 1.5015 2.1492 34 1 0.5472 2.0845 1.4265 35 1 3.4458 3.9087 2.9009 36 1 4.1334 2.8189 1.6729 37 1 3.9273 4.5496 1.3116 38 1 2.8499 5.8848 0.2410 39 1 2.1745 6.1435 1.8675 40 1 -0.3301 7.2387 1.9803 41 1 -0.5678 8.5331 -2.0108 42 1 1.3499 5.9294 -2.6188 43 1 2.7237 6.6257 -1.7266 44 1 1.7839 7.6405 -2.8470 45 1 1.5612 -0.3872 -2.0627 46 1 3.0797 -0.6612 -1.1755 47 1 2.5243 -2.8281 -2.6780 48 1 3.0461 -5.6199 -4.4312 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268254828.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:01:39 Heat of formation + Delta-G solvation = -15.371345 kcal Electronic energy + Delta-G solvation = -28817.519989 eV Core-core repulsion = 24715.380976 eV Total energy + Delta-G solvation = -4102.139013 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.05097 -40.93584 -40.32242 -38.14106 -36.46809 -35.82946 -34.97536 -33.39778 -33.27009 -31.08736 -29.25003 -28.17136 -27.78623 -27.64045 -26.79106 -25.25428 -22.62604 -22.40553 -21.27355 -21.00419 -19.98550 -19.83352 -18.25877 -17.99989 -17.88720 -17.28099 -16.79572 -16.63193 -16.49610 -16.31516 -16.06233 -15.63198 -15.39083 -15.22309 -14.98012 -14.66990 -14.31204 -14.17616 -13.94995 -13.91127 -13.78426 -13.75426 -13.46927 -13.34521 -13.22139 -13.13162 -13.03065 -12.77558 -12.61795 -12.56376 -12.40090 -12.11891 -11.86344 -11.47355 -11.00586 -10.94061 -10.48558 -10.34542 -10.00574 -9.70695 -9.32006 -9.30454 -8.47034 -5.95394 1.00156 1.36095 1.41502 1.55568 1.58889 1.87067 2.01441 2.04244 2.23481 2.30128 2.84110 3.19526 3.39120 3.53353 3.71143 3.89119 3.94843 3.97217 4.03989 4.11246 4.22064 4.31163 4.32023 4.39652 4.45031 4.46283 4.49091 4.55741 4.57208 4.59740 4.69636 4.75733 4.79321 4.82479 4.92878 5.03682 5.14090 5.38784 5.41220 5.46284 5.77868 5.81920 6.01044 6.12261 6.28967 6.40292 6.60303 7.12127 7.12902 7.16675 7.55838 8.11807 8.70637 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.022098 B = 0.001882 C = 0.001837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.782041 B =14874.771589 C =15239.235024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.528 5.528 3 C 0.052 3.948 4 C 0.124 3.876 5 N -0.611 5.611 6 C 0.066 3.934 7 C 0.506 3.494 8 O -0.581 6.581 9 C -0.052 4.052 10 C -0.012 4.012 11 C -0.044 4.044 12 N -0.540 5.540 13 C 0.177 3.823 14 N -0.456 5.456 15 C 0.063 3.937 16 C 0.059 3.941 17 C 0.442 3.558 18 O -0.613 6.613 19 N -0.574 5.574 20 C -0.330 4.330 21 H 0.079 0.921 22 C -0.014 4.014 23 N -0.921 5.921 24 Si 0.993 3.007 25 H -0.274 1.274 26 H -0.272 1.272 27 H -0.270 1.270 28 H 0.016 0.984 29 H 0.060 0.940 30 H 0.073 0.927 31 H 0.022 0.978 32 H 0.096 0.904 33 H 0.098 0.902 34 H 0.059 0.941 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.100 0.900 38 H 0.134 0.866 39 H 0.145 0.855 40 H 0.167 0.833 41 H 0.235 0.765 42 H 0.069 0.931 43 H 0.104 0.896 44 H 0.116 0.884 45 H 0.060 0.940 46 H 0.117 0.883 47 H 0.396 0.604 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.109 27.260 4.495 28.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.253 5.253 3 C -0.076 4.076 4 C 0.000 4.000 5 N -0.344 5.344 6 C -0.076 4.076 7 C 0.295 3.705 8 O -0.460 6.460 9 C -0.092 4.092 10 C -0.128 4.128 11 C -0.192 4.192 12 N -0.258 5.258 13 C -0.106 4.106 14 N -0.138 5.138 15 C -0.078 4.078 16 C -0.072 4.072 17 C 0.229 3.771 18 O -0.499 6.499 19 N -0.212 5.212 20 C -0.460 4.460 21 H 0.097 0.903 22 C -0.214 4.214 23 N -0.562 5.562 24 Si 0.817 3.183 25 H -0.199 1.199 26 H -0.198 1.198 27 H -0.195 1.195 28 H 0.035 0.965 29 H 0.079 0.921 30 H 0.092 0.908 31 H 0.040 0.960 32 H 0.114 0.886 33 H 0.116 0.884 34 H 0.077 0.923 35 H 0.094 0.906 36 H 0.101 0.899 37 H 0.118 0.882 38 H 0.151 0.849 39 H 0.163 0.837 40 H 0.184 0.816 41 H 0.251 0.749 42 H 0.087 0.913 43 H 0.123 0.877 44 H 0.135 0.865 45 H 0.078 0.922 46 H 0.135 0.865 47 H 0.230 0.770 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.774 26.993 5.253 28.321 hybrid contribution 0.001 -1.153 -1.435 1.841 sum 6.775 25.840 3.818 26.985 Atomic orbital electron populations 1.22383 0.87358 1.02016 0.99960 1.61496 1.08361 1.13075 1.42341 1.22432 1.01013 0.86791 0.97395 1.21268 0.99643 0.81500 0.97588 1.47936 1.18044 1.06275 1.62116 1.22216 0.80604 1.04195 1.00538 1.21171 0.84838 0.87865 0.76624 1.90755 1.22053 1.85295 1.47909 1.20165 0.96526 0.86897 1.05643 1.20775 1.02816 1.04089 0.85072 1.22224 0.95350 1.01170 1.00413 1.70191 1.29726 1.24331 1.01594 1.25516 0.88104 0.97725 0.99219 1.45471 1.24396 1.35154 1.08789 1.22352 0.93777 1.03239 0.88426 1.21743 1.02306 0.90256 0.92904 1.20714 0.83770 0.88649 0.83963 1.90466 1.45065 1.81389 1.32990 1.41930 1.50065 1.07051 1.22132 1.19687 1.34283 0.83976 1.08038 0.90326 1.26038 0.96321 1.04331 0.94700 1.69679 1.38182 1.37087 1.11232 0.84869 0.78272 0.76980 0.78210 1.19855 1.19750 1.19479 0.96524 0.92139 0.90835 0.96003 0.88598 0.88386 0.92260 0.90627 0.89861 0.88178 0.84873 0.83692 0.81604 0.74924 0.91264 0.87733 0.86530 0.92178 0.86546 0.77026 0.91328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.11 8.96 127.69 1.14 2.25 16 2 N -0.53 -17.53 4.50 -927.03 -4.17 -21.70 16 3 C 0.05 1.29 5.28 86.31 0.46 1.74 16 4 C 0.12 2.72 5.33 86.38 0.46 3.18 16 5 N -0.61 -9.54 2.87 -846.73 -2.43 -11.98 16 6 C 0.07 0.37 10.24 127.77 1.31 1.68 16 7 C 0.51 9.79 7.67 87.66 0.67 10.46 16 8 O -0.58 -18.04 15.61 -3.04 -0.05 -18.09 16 9 C -0.05 -0.55 4.59 29.10 0.13 -0.42 16 10 C -0.01 -0.21 5.45 40.95 0.22 0.01 16 11 C -0.04 -1.03 11.79 83.52 0.98 -0.04 16 12 N -0.54 -13.93 11.25 -200.32 -2.25 -16.18 16 13 C 0.18 3.27 12.56 180.26 2.26 5.54 16 14 N -0.46 -7.19 3.15 -537.88 -1.70 -8.89 16 15 C 0.06 0.44 11.00 127.77 1.41 1.84 16 16 C 0.06 2.08 5.45 85.56 0.47 2.54 16 17 C 0.44 21.20 7.47 87.66 0.66 21.86 16 18 O -0.61 -34.08 13.91 -3.05 -0.04 -34.13 16 19 N -0.57 -29.58 5.29 -306.99 -1.62 -31.20 16 20 C -0.33 -18.81 9.68 84.04 0.81 -18.00 16 21 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 22 C -0.01 -0.77 5.50 84.92 0.47 -0.30 16 23 N -0.92 -49.60 13.05 21.66 0.28 -49.31 16 24 Si 0.99 43.08 29.55 68.60 2.03 45.11 16 25 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 26 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 27 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 28 H 0.02 0.57 8.14 -2.38 -0.02 0.55 16 29 H 0.06 2.61 5.82 -2.39 -0.01 2.59 16 30 H 0.07 2.41 6.47 -2.39 -0.02 2.39 16 31 H 0.02 0.59 8.12 -2.39 -0.02 0.57 16 32 H 0.10 1.90 7.93 -2.39 -0.02 1.88 16 33 H 0.10 1.97 8.07 -2.39 -0.02 1.95 16 34 H 0.06 1.65 5.83 -2.39 -0.01 1.64 16 35 H 0.08 0.26 8.14 -2.38 -0.02 0.24 16 36 H 0.08 0.44 8.07 -2.38 -0.02 0.42 16 37 H 0.10 -0.01 6.44 -2.39 -0.02 -0.03 16 38 H 0.13 0.47 6.35 -2.39 -0.02 0.46 16 39 H 0.15 0.73 8.11 -2.38 -0.02 0.71 16 40 H 0.17 3.49 8.06 -2.91 -0.02 3.47 16 41 H 0.23 2.36 8.06 -2.91 -0.02 2.33 16 42 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 43 H 0.10 0.26 7.12 -2.39 -0.02 0.24 16 44 H 0.12 0.17 8.14 -2.38 -0.02 0.15 16 45 H 0.06 1.98 8.12 -2.39 -0.02 1.96 16 46 H 0.12 3.42 7.93 -2.39 -0.02 3.41 16 47 H 0.40 19.30 7.90 -92.71 -0.73 18.56 16 48 H 0.28 13.93 8.31 -92.71 -0.77 13.16 16 Total: -1.00 -86.12 397.93 1.75 -84.37 By element: Atomic # 1 Polarization: 29.42 SS G_CDS: 0.25 Total: 29.67 kcal Atomic # 6 Polarization: 20.88 SS G_CDS: 11.46 Total: 32.34 kcal Atomic # 7 Polarization: -127.38 SS G_CDS: -11.89 Total: -139.27 kcal Atomic # 8 Polarization: -52.13 SS G_CDS: -0.09 Total: -52.22 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Total: -86.12 1.75 -84.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268254828.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.998 kcal (2) G-P(sol) polarization free energy of solvation -86.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds