Wall clock time and date at job start Tue Mar 31 2020 20:22:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46501 * 109.47367 * 2 1 4 4 C 1.46494 * 119.99971 * 96.30943 * 3 2 1 5 5 C 1.53001 * 109.47163 * 90.00473 * 4 3 2 6 6 N 1.46904 * 109.47461 * 179.97438 * 5 4 3 7 7 C 1.46896 * 110.99833 * 180.02562 * 6 5 4 8 8 C 1.50700 * 109.46980 * 180.02562 * 7 6 5 9 9 O 1.21296 * 120.00138 * 0.02562 * 8 7 6 10 10 N 1.34775 * 120.00203 * 179.97438 * 8 7 6 11 11 C 1.37107 * 120.00172 * 179.97438 * 10 8 7 12 12 H 1.08001 * 119.99940 * 0.02562 * 11 10 8 13 13 C 1.38942 * 119.99818 * 180.02562 * 11 10 8 14 14 N 1.31414 * 120.00506 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 119.99725 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.47109 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.46999 * 120.00189 * 15 13 11 18 18 H 1.48498 * 109.47145 * 239.99833 * 15 13 11 19 19 C 1.34780 * 120.00133 * 276.31731 * 3 2 1 20 20 O 1.21674 * 120.00174 * 183.25100 * 19 3 2 21 21 C 1.46769 * 119.99630 * 3.24648 * 19 3 2 22 22 C 1.36660 * 126.84667 * 7.75973 * 21 19 3 23 23 N 1.33314 * 107.78632 * 180.02562 * 22 21 19 24 24 C 1.30865 * 109.68511 * 359.97438 * 23 22 21 25 25 C 1.50696 * 125.41785 * 179.97438 * 24 23 22 26 26 N 1.34499 * 109.16122 * 359.72768 * 24 23 22 27 27 C 1.46502 * 126.47056 * 180.28818 * 26 24 23 28 28 H 1.09005 * 109.47270 * 291.87159 * 1 2 3 29 29 H 1.08994 * 109.47297 * 51.86781 * 1 2 3 30 30 H 1.09003 * 109.47097 * 171.87545 * 1 2 3 31 31 H 1.08996 * 109.47520 * 119.99958 * 2 1 3 32 32 H 1.09001 * 109.47217 * 240.00055 * 2 1 3 33 33 H 1.09004 * 109.47502 * 210.00045 * 4 3 2 34 34 H 1.08998 * 109.47503 * 330.00934 * 4 3 2 35 35 H 1.08997 * 109.47195 * 300.00182 * 5 4 3 36 36 H 1.09003 * 109.47007 * 59.99898 * 5 4 3 37 37 H 1.00899 * 110.99489 * 56.04939 * 6 5 4 38 38 H 1.09004 * 109.47294 * 299.99887 * 7 6 5 39 39 H 1.09001 * 109.47341 * 60.00360 * 7 6 5 40 40 H 0.96996 * 120.00410 * 0.02562 * 10 8 7 41 41 H 0.96995 * 120.00395 * 180.02562 * 14 13 11 42 42 H 1.07996 * 126.10521 * 0.02562 * 22 21 19 43 43 H 1.09010 * 109.46952 * 90.02788 * 25 24 23 44 44 H 1.09001 * 109.47188 * 210.02725 * 25 24 23 45 45 H 1.08997 * 109.47579 * 330.02787 * 25 24 23 46 46 H 1.09001 * 109.46946 * 274.21630 * 27 26 24 47 47 H 1.08995 * 109.47099 * 34.21770 * 27 26 24 48 48 H 1.08997 * 109.46620 * 154.21664 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3940 2.0253 1.2610 5 6 3.8765 1.7716 1.5414 6 7 4.2534 2.4180 2.8056 7 6 5.6737 2.1956 3.1076 8 6 6.0224 2.8712 4.4087 9 8 5.1713 3.4779 5.0242 10 7 7.2796 2.8005 4.8891 11 6 7.5970 3.4156 6.0726 12 1 6.8393 3.9565 6.6202 13 6 8.8933 3.3431 6.5674 14 7 9.8153 2.6854 5.9009 15 14 9.3254 4.1806 8.1803 16 1 8.1186 4.8487 8.7301 17 1 9.8140 3.1667 9.1491 18 1 10.3872 5.1916 7.9442 19 6 2.1219 2.0594 -1.1601 20 8 2.5829 3.1854 -1.1676 21 6 1.6786 1.4396 -2.4145 22 6 1.0107 0.2553 -2.5522 23 7 0.7980 0.0566 -3.8532 24 6 1.2965 1.0536 -4.5387 25 6 1.2542 1.1896 -6.0389 26 7 1.8479 1.9403 -3.6909 27 6 2.5070 3.1976 -4.0529 28 1 -0.3634 0.3828 0.9537 29 1 -0.3633 0.6345 -0.8083 30 1 -0.3633 -1.0174 -0.1452 31 1 1.8933 -0.5138 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 2.2165 3.0983 1.1880 34 1 1.7949 1.6123 2.0726 35 1 4.0541 0.6987 1.6144 36 1 4.4756 2.1847 0.7299 37 1 3.6681 2.0993 3.5632 38 1 5.8641 1.1256 3.1918 39 1 6.2849 2.6115 2.3066 40 1 7.9602 2.3151 4.3971 41 1 10.7201 2.6345 6.2466 42 1 0.7091 -0.4022 -1.7503 43 1 0.3473 1.7196 -6.3302 44 1 2.1265 1.7485 -6.3778 45 1 1.2581 0.1991 -6.4938 46 1 3.5542 3.0048 -4.2861 47 1 2.0140 3.6284 -4.9244 48 1 2.4431 3.8949 -3.2176 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268472983.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:05 Heat of formation + Delta-G solvation = 19.116850 kcal Electronic energy + Delta-G solvation = -28718.313903 eV Core-core repulsion = 24617.670410 eV Total energy + Delta-G solvation = -4100.643493 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.73152 -39.93464 -38.27238 -36.90191 -35.56933 -34.25871 -33.84710 -32.57119 -31.46346 -31.18088 -29.47923 -27.98572 -27.14975 -25.87612 -24.04859 -23.97602 -22.75006 -22.10614 -20.52134 -19.59525 -19.16571 -17.87769 -17.51256 -17.13079 -16.58631 -16.30396 -16.12717 -15.54993 -15.13260 -15.12306 -14.53262 -14.37071 -14.15953 -13.95268 -13.80571 -13.73875 -13.44305 -13.31422 -13.26312 -13.03985 -12.84542 -12.79243 -12.48244 -12.31124 -12.09688 -12.00605 -11.57766 -11.50255 -11.48909 -11.12758 -10.97984 -10.65385 -10.33512 -10.21755 -10.11270 -10.00878 -9.51115 -9.07490 -8.75739 -8.44737 -8.06883 -7.95037 -6.40829 -3.81664 0.97506 2.05160 2.45550 2.79613 3.02110 3.17142 3.27598 3.35146 3.91864 3.95693 4.07155 4.14148 4.38334 4.40196 4.50332 4.52350 4.72587 4.81101 4.87063 4.90923 5.00592 5.01402 5.08290 5.13810 5.18527 5.21241 5.27093 5.31565 5.35083 5.41684 5.44625 5.70783 5.78262 5.81140 5.88519 5.93733 6.00551 6.13899 6.22958 6.30297 6.66599 7.01795 7.17748 7.54761 7.56399 7.64936 7.86542 8.07532 8.62180 9.18850 9.55304 10.06646 10.77035 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.024030 B = 0.001806 C = 0.001742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.936267 B =15502.635271 C =16067.167714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.083 3.917 3 N -0.596 5.596 4 C 0.121 3.879 5 C 0.047 3.953 6 N -0.665 5.665 7 C 0.053 3.947 8 C 0.442 3.558 9 O -0.583 6.583 10 N -0.564 5.564 11 C -0.298 4.298 12 H 0.104 0.896 13 C 0.021 3.979 14 N -0.902 5.902 15 Si 0.930 3.070 16 H -0.268 1.268 17 H -0.282 1.282 18 H -0.281 1.281 19 C 0.593 3.407 20 O -0.537 6.537 21 C -0.088 4.088 22 C 0.011 3.989 23 N -0.496 5.496 24 C 0.224 3.776 25 C -0.072 4.072 26 N -0.423 5.423 27 C 0.061 3.939 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.097 0.903 34 H 0.081 0.919 35 H 0.027 0.973 36 H 0.074 0.926 37 H 0.349 0.651 38 H 0.043 0.957 39 H 0.086 0.914 40 H 0.392 0.608 41 H 0.271 0.729 42 H 0.207 0.793 43 H 0.084 0.916 44 H 0.076 0.924 45 H 0.094 0.906 46 H 0.080 0.920 47 H 0.087 0.913 48 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.261 -8.011 -22.989 29.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.040 4.040 3 N -0.328 5.328 4 C -0.001 4.001 5 C -0.084 4.084 6 N -0.298 5.298 7 C -0.080 4.080 8 C 0.227 3.773 9 O -0.467 6.467 10 N -0.201 5.201 11 C -0.428 4.428 12 H 0.122 0.878 13 C -0.180 4.180 14 N -0.544 5.544 15 Si 0.757 3.243 16 H -0.192 1.192 17 H -0.208 1.208 18 H -0.207 1.207 19 C 0.381 3.619 20 O -0.415 6.415 21 C -0.204 4.204 22 C -0.143 4.143 23 N -0.215 5.215 24 C -0.037 4.037 25 C -0.130 4.130 26 N -0.104 5.104 27 C -0.081 4.081 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.095 0.905 31 H 0.107 0.893 32 H 0.111 0.889 33 H 0.115 0.885 34 H 0.100 0.900 35 H 0.045 0.955 36 H 0.093 0.907 37 H 0.168 0.832 38 H 0.061 0.939 39 H 0.104 0.896 40 H 0.225 0.775 41 H 0.081 0.919 42 H 0.223 0.777 43 H 0.103 0.897 44 H 0.095 0.905 45 H 0.113 0.887 46 H 0.099 0.901 47 H 0.105 0.895 48 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -17.577 -6.891 -23.189 29.903 hybrid contribution 1.270 -0.230 1.111 1.703 sum -16.307 -7.121 -22.078 28.356 Atomic orbital electron populations 1.22493 0.95405 1.03103 1.03602 1.22196 0.94771 0.82485 1.04505 1.47544 1.64815 1.14120 1.06344 1.21465 0.94973 1.00177 0.83487 1.22273 0.96054 0.96232 0.93820 1.59929 1.03638 1.61848 1.04379 1.21653 0.89895 0.98362 0.98040 1.19793 0.83806 0.86197 0.87514 1.90523 1.48444 1.46720 1.60979 1.41870 1.08670 1.47814 1.21740 1.19765 0.95573 1.29461 0.98006 0.87829 1.25270 0.95406 0.97584 0.99765 1.69621 1.03252 1.42037 1.39446 0.85791 0.78619 0.78770 0.81108 1.19202 1.20788 1.20748 1.16795 0.78072 0.84843 0.82159 1.90812 1.45719 1.18660 1.86294 1.20698 1.13815 0.99830 0.86076 1.24096 0.99706 0.95573 0.94905 1.70190 1.22897 1.24284 1.04152 1.23495 0.97795 0.87258 0.95190 1.20280 1.03293 1.04790 0.84653 1.45098 1.41697 1.18246 1.05343 1.22362 0.97928 0.83776 1.04051 0.91408 0.91242 0.90545 0.89275 0.88895 0.88457 0.90020 0.95489 0.90727 0.83223 0.93867 0.89589 0.77463 0.91937 0.77707 0.89740 0.90505 0.88691 0.90098 0.89482 0.87090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.09 8.43 37.15 0.31 -0.78 16 2 C 0.08 0.57 5.63 -4.05 -0.02 0.55 16 3 N -0.60 -6.07 2.49 -175.21 -0.44 -6.51 16 4 C 0.12 1.37 5.61 -4.04 -0.02 1.35 16 5 C 0.05 0.61 6.01 -3.82 -0.02 0.59 16 6 N -0.67 -11.02 6.13 -115.06 -0.70 -11.72 16 7 C 0.05 0.97 6.17 -4.98 -0.03 0.94 16 8 C 0.44 10.63 7.82 -10.99 -0.09 10.55 16 9 O -0.58 -16.05 15.78 5.54 0.09 -15.96 16 10 N -0.56 -14.55 5.29 -10.96 -0.06 -14.61 16 11 C -0.30 -8.44 9.68 -14.93 -0.14 -8.58 16 12 H 0.10 3.07 7.16 -52.49 -0.38 2.70 16 13 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 14 N -0.90 -24.80 13.05 55.50 0.72 -24.07 16 15 Si 0.93 21.24 29.55 -169.99 -5.02 16.22 16 16 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 17 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 18 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 19 C 0.59 7.37 7.57 -12.81 -0.10 7.27 16 20 O -0.54 -8.27 14.39 5.21 0.08 -8.20 16 21 C -0.09 -0.98 6.65 -82.14 -0.55 -1.53 16 22 C 0.01 0.11 8.32 -17.48 -0.15 -0.04 16 23 N -0.50 -5.41 11.20 -10.58 -0.12 -5.53 16 24 C 0.22 2.07 7.88 -155.61 -1.23 0.85 16 25 C -0.07 -0.35 10.00 36.00 0.36 0.01 16 26 N -0.42 -4.20 3.17 -117.27 -0.37 -4.57 16 27 C 0.06 0.45 10.38 59.85 0.62 1.08 16 28 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.50 6.19 -51.93 -0.32 0.18 16 30 H 0.08 0.30 8.08 -51.93 -0.42 -0.11 16 31 H 0.09 0.50 8.02 -51.93 -0.42 0.09 16 32 H 0.09 0.62 5.12 -51.93 -0.27 0.35 16 33 H 0.10 1.32 7.47 -51.93 -0.39 0.94 16 34 H 0.08 0.76 8.07 -51.93 -0.42 0.34 16 35 H 0.03 0.32 8.14 -51.93 -0.42 -0.11 16 36 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.35 5.67 8.43 -39.29 -0.33 5.34 16 38 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 40 H 0.39 9.66 7.90 -40.82 -0.32 9.34 16 41 H 0.27 7.01 8.31 -40.82 -0.34 6.68 16 42 H 0.21 1.53 3.07 -52.49 -0.16 1.37 16 43 H 0.08 0.31 8.14 -51.92 -0.42 -0.11 16 44 H 0.08 0.24 7.78 -51.93 -0.40 -0.16 16 45 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.09 0.39 7.85 -51.93 -0.41 -0.02 16 48 H 0.11 1.07 6.16 -51.93 -0.32 0.75 16 LS Contribution 392.76 15.07 5.92 5.92 Total: -1.00 -36.08 392.76 -8.12 -44.20 By element: Atomic # 1 Polarization: 19.17 SS G_CDS: -7.07 Total: 12.10 kcal Atomic # 6 Polarization: 13.88 SS G_CDS: -1.15 Total: 12.74 kcal Atomic # 7 Polarization: -66.05 SS G_CDS: -0.97 Total: -67.01 kcal Atomic # 8 Polarization: -24.32 SS G_CDS: 0.16 Total: -24.16 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -36.08 -8.12 -44.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268472983.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.318 kcal (2) G-P(sol) polarization free energy of solvation -36.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds