Wall clock time and date at job start Tue Mar 31 2020 20:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46501 * 109.47367 * 2 1 4 4 C 1.46494 * 119.99971 * 96.30943 * 3 2 1 5 5 C 1.53001 * 109.47163 * 90.00473 * 4 3 2 6 6 N 1.46904 * 109.47461 * 179.97438 * 5 4 3 7 7 C 1.46896 * 110.99833 * 180.02562 * 6 5 4 8 8 C 1.50700 * 109.46980 * 180.02562 * 7 6 5 9 9 O 1.21296 * 120.00138 * 0.02562 * 8 7 6 10 10 N 1.34775 * 120.00203 * 179.97438 * 8 7 6 11 11 C 1.37107 * 120.00172 * 179.97438 * 10 8 7 12 12 H 1.08001 * 119.99940 * 0.02562 * 11 10 8 13 13 C 1.38942 * 119.99818 * 180.02562 * 11 10 8 14 14 N 1.31414 * 120.00506 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 119.99725 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.47109 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.46999 * 120.00189 * 15 13 11 18 18 H 1.48498 * 109.47145 * 239.99833 * 15 13 11 19 19 C 1.34780 * 120.00133 * 276.31731 * 3 2 1 20 20 O 1.21674 * 120.00174 * 183.25100 * 19 3 2 21 21 C 1.46769 * 119.99630 * 3.24648 * 19 3 2 22 22 C 1.36660 * 126.84667 * 7.75973 * 21 19 3 23 23 N 1.33314 * 107.78632 * 180.02562 * 22 21 19 24 24 C 1.30865 * 109.68511 * 359.97438 * 23 22 21 25 25 C 1.50696 * 125.41785 * 179.97438 * 24 23 22 26 26 N 1.34499 * 109.16122 * 359.72768 * 24 23 22 27 27 C 1.46502 * 126.47056 * 180.28818 * 26 24 23 28 28 H 1.09005 * 109.47270 * 291.87159 * 1 2 3 29 29 H 1.08994 * 109.47297 * 51.86781 * 1 2 3 30 30 H 1.09003 * 109.47097 * 171.87545 * 1 2 3 31 31 H 1.08996 * 109.47520 * 119.99958 * 2 1 3 32 32 H 1.09001 * 109.47217 * 240.00055 * 2 1 3 33 33 H 1.09004 * 109.47502 * 210.00045 * 4 3 2 34 34 H 1.08998 * 109.47503 * 330.00934 * 4 3 2 35 35 H 1.08997 * 109.47195 * 300.00182 * 5 4 3 36 36 H 1.09003 * 109.47007 * 59.99898 * 5 4 3 37 37 H 1.00899 * 110.99489 * 56.04939 * 6 5 4 38 38 H 1.09004 * 109.47294 * 299.99887 * 7 6 5 39 39 H 1.09001 * 109.47341 * 60.00360 * 7 6 5 40 40 H 0.96996 * 120.00410 * 0.02562 * 10 8 7 41 41 H 0.96995 * 120.00395 * 180.02562 * 14 13 11 42 42 H 1.07996 * 126.10521 * 0.02562 * 22 21 19 43 43 H 1.09010 * 109.46952 * 90.02788 * 25 24 23 44 44 H 1.09001 * 109.47188 * 210.02725 * 25 24 23 45 45 H 1.08997 * 109.47579 * 330.02787 * 25 24 23 46 46 H 1.09001 * 109.46946 * 274.21630 * 27 26 24 47 47 H 1.08995 * 109.47099 * 34.21770 * 27 26 24 48 48 H 1.08997 * 109.46620 * 154.21664 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3940 2.0253 1.2610 5 6 3.8765 1.7716 1.5414 6 7 4.2534 2.4180 2.8056 7 6 5.6737 2.1956 3.1076 8 6 6.0224 2.8712 4.4087 9 8 5.1713 3.4779 5.0242 10 7 7.2796 2.8005 4.8891 11 6 7.5970 3.4156 6.0726 12 1 6.8393 3.9565 6.6202 13 6 8.8933 3.3431 6.5674 14 7 9.8153 2.6854 5.9009 15 14 9.3254 4.1806 8.1803 16 1 8.1186 4.8487 8.7301 17 1 9.8140 3.1667 9.1491 18 1 10.3872 5.1916 7.9442 19 6 2.1219 2.0594 -1.1601 20 8 2.5829 3.1854 -1.1676 21 6 1.6786 1.4396 -2.4145 22 6 1.0107 0.2553 -2.5522 23 7 0.7980 0.0566 -3.8532 24 6 1.2965 1.0536 -4.5387 25 6 1.2542 1.1896 -6.0389 26 7 1.8479 1.9403 -3.6909 27 6 2.5070 3.1976 -4.0529 28 1 -0.3634 0.3828 0.9537 29 1 -0.3633 0.6345 -0.8083 30 1 -0.3633 -1.0174 -0.1452 31 1 1.8933 -0.5138 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 2.2165 3.0983 1.1880 34 1 1.7949 1.6123 2.0726 35 1 4.0541 0.6987 1.6144 36 1 4.4756 2.1847 0.7299 37 1 3.6681 2.0993 3.5632 38 1 5.8641 1.1256 3.1918 39 1 6.2849 2.6115 2.3066 40 1 7.9602 2.3151 4.3971 41 1 10.7201 2.6345 6.2466 42 1 0.7091 -0.4022 -1.7503 43 1 0.3473 1.7196 -6.3302 44 1 2.1265 1.7485 -6.3778 45 1 1.2581 0.1991 -6.4938 46 1 3.5542 3.0048 -4.2861 47 1 2.0140 3.6284 -4.9244 48 1 2.4431 3.8949 -3.2176 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268472983.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:03 Heat of formation + Delta-G solvation = -7.855502 kcal Electronic energy + Delta-G solvation = -28719.483512 eV Core-core repulsion = 24617.670410 eV Total energy + Delta-G solvation = -4101.813102 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.44848 -40.81381 -40.15440 -37.84137 -36.81651 -35.86828 -34.96888 -33.41770 -33.20310 -32.08467 -30.45924 -28.87383 -27.90352 -27.31740 -25.64711 -24.60929 -23.73641 -23.00635 -21.34427 -21.01411 -20.29815 -19.91213 -18.27191 -17.92246 -17.86748 -17.26184 -17.15358 -17.01285 -16.49061 -16.00509 -15.93067 -15.76192 -15.39757 -15.11491 -14.85333 -14.76022 -14.41122 -14.21883 -13.95079 -13.83913 -13.80099 -13.50512 -13.36619 -13.30998 -13.28690 -13.00085 -12.93778 -12.78919 -12.69702 -12.41855 -12.18003 -12.11787 -11.99125 -11.52900 -11.45688 -10.96138 -10.76045 -10.41092 -10.03498 -9.90117 -9.48107 -9.38730 -8.48189 -5.97291 0.20224 1.33315 1.36022 1.41457 1.55996 1.71283 2.01982 2.04107 2.18786 2.29044 2.95223 3.18782 3.32592 3.44973 3.53423 3.82535 3.89976 3.93903 3.98261 4.06372 4.24238 4.26656 4.27795 4.30457 4.41998 4.45601 4.49336 4.55995 4.57087 4.67932 4.70548 4.75612 4.85112 4.91017 4.95758 5.03098 5.13529 5.34324 5.39724 5.41453 5.46444 5.82142 6.02876 6.04507 6.19830 6.38918 6.57770 6.81334 6.99849 7.10634 7.53572 8.08527 8.69480 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.024030 B = 0.001806 C = 0.001742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.936267 B =15502.635271 C =16067.167714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.079 3.921 3 N -0.590 5.590 4 C 0.128 3.872 5 C 0.057 3.943 6 N -0.681 5.681 7 C 0.068 3.932 8 C 0.438 3.562 9 O -0.622 6.622 10 N -0.573 5.573 11 C -0.334 4.334 12 H 0.080 0.920 13 C -0.014 4.014 14 N -0.921 5.921 15 Si 0.995 3.005 16 H -0.273 1.273 17 H -0.269 1.269 18 H -0.272 1.272 19 C 0.587 3.413 20 O -0.579 6.579 21 C -0.118 4.118 22 C 0.021 3.979 23 N -0.525 5.525 24 C 0.228 3.772 25 C -0.072 4.072 26 N -0.432 5.432 27 C 0.060 3.940 28 H 0.068 0.932 29 H 0.052 0.948 30 H 0.100 0.900 31 H 0.109 0.891 32 H 0.098 0.902 33 H 0.069 0.931 34 H 0.108 0.892 35 H 0.052 0.948 36 H 0.055 0.945 37 H 0.350 0.650 38 H 0.072 0.928 39 H 0.095 0.905 40 H 0.396 0.604 41 H 0.278 0.722 42 H 0.226 0.774 43 H 0.100 0.900 44 H 0.097 0.903 45 H 0.101 0.899 46 H 0.088 0.912 47 H 0.119 0.881 48 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.580 -9.560 -23.930 31.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.043 4.043 3 N -0.321 5.321 4 C 0.005 3.995 5 C -0.073 4.073 6 N -0.315 5.315 7 C -0.065 4.065 8 C 0.226 3.774 9 O -0.508 6.508 10 N -0.210 5.210 11 C -0.464 4.464 12 H 0.098 0.902 13 C -0.214 4.214 14 N -0.562 5.562 15 Si 0.818 3.182 16 H -0.198 1.198 17 H -0.194 1.194 18 H -0.197 1.197 19 C 0.377 3.623 20 O -0.461 6.461 21 C -0.234 4.234 22 C -0.133 4.133 23 N -0.245 5.245 24 C -0.034 4.034 25 C -0.130 4.130 26 N -0.113 5.113 27 C -0.081 4.081 28 H 0.087 0.913 29 H 0.071 0.929 30 H 0.119 0.881 31 H 0.128 0.872 32 H 0.115 0.885 33 H 0.087 0.913 34 H 0.126 0.874 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.170 0.830 38 H 0.090 0.910 39 H 0.113 0.887 40 H 0.230 0.770 41 H 0.087 0.913 42 H 0.242 0.758 43 H 0.118 0.882 44 H 0.115 0.885 45 H 0.120 0.880 46 H 0.106 0.894 47 H 0.138 0.862 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -17.897 -8.483 -24.152 31.235 hybrid contribution 1.317 0.217 1.324 1.880 sum -16.580 -8.267 -22.829 29.400 Atomic orbital electron populations 1.22446 0.94403 1.04232 1.03018 1.22452 0.95546 0.80556 1.05710 1.47609 1.64034 1.15201 1.05268 1.21318 0.94376 0.99016 0.84801 1.22204 0.96695 0.97079 0.91348 1.59866 1.02716 1.63256 1.05661 1.21490 0.91168 0.99197 0.94607 1.20805 0.82698 0.85145 0.88796 1.90491 1.49377 1.48279 1.62651 1.41936 1.09509 1.48096 1.21455 1.19729 0.95928 1.31202 0.99529 0.90222 1.26072 0.94747 0.97709 1.02827 1.69679 1.03655 1.42178 1.40642 0.84842 0.78120 0.78052 0.77137 1.19759 1.19419 1.19690 1.17103 0.77602 0.84482 0.83138 1.90785 1.47857 1.20452 1.86973 1.20687 1.15671 1.00767 0.86236 1.24460 0.98377 0.95127 0.95290 1.70236 1.24249 1.25424 1.04594 1.24332 0.95953 0.86346 0.96757 1.20503 1.05014 1.05815 0.81663 1.45327 1.41878 1.18931 1.05133 1.22449 0.98781 0.82710 1.04187 0.91317 0.92864 0.88120 0.87231 0.88454 0.91285 0.87427 0.93034 0.92641 0.83012 0.91035 0.88653 0.76980 0.91264 0.75837 0.88153 0.88472 0.88034 0.89359 0.86221 0.89669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.77 8.43 71.98 0.61 -1.16 16 2 C 0.08 0.93 5.63 86.38 0.49 1.41 16 3 N -0.59 -11.69 2.49 -826.45 -2.06 -13.74 16 4 C 0.13 2.83 5.61 86.38 0.48 3.32 16 5 C 0.06 1.43 6.01 86.30 0.52 1.95 16 6 N -0.68 -22.17 6.13 -517.93 -3.17 -25.35 16 7 C 0.07 2.42 6.17 85.56 0.53 2.94 16 8 C 0.44 21.33 7.82 87.66 0.69 22.02 16 9 O -0.62 -35.04 15.78 -3.08 -0.05 -35.09 16 10 N -0.57 -29.97 5.29 -306.98 -1.62 -31.59 16 11 C -0.33 -19.28 9.68 84.04 0.81 -18.46 16 12 H 0.08 4.89 7.16 -2.91 -0.02 4.87 16 13 C -0.01 -0.75 5.50 84.92 0.47 -0.28 16 14 N -0.92 -50.16 13.05 21.66 0.28 -49.88 16 15 Si 0.99 43.33 29.55 68.60 2.03 45.36 16 16 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 17 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 18 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 19 C 0.59 14.95 7.57 86.47 0.65 15.60 16 20 O -0.58 -18.89 14.39 -4.27 -0.06 -18.95 16 21 C -0.12 -2.62 6.65 40.01 0.27 -2.36 16 22 C 0.02 0.40 8.32 84.10 0.70 1.10 16 23 N -0.53 -10.85 11.20 -187.40 -2.10 -12.95 16 24 C 0.23 3.90 7.88 138.19 1.09 4.99 16 25 C -0.07 -0.52 10.00 71.23 0.71 0.19 16 26 N -0.43 -8.38 3.17 -524.94 -1.67 -10.04 16 27 C 0.06 0.88 10.38 127.77 1.33 2.21 16 28 H 0.07 0.68 8.14 -2.38 -0.02 0.66 16 29 H 0.05 0.72 6.19 -2.39 -0.01 0.70 16 30 H 0.10 0.50 8.08 -2.39 -0.02 0.49 16 31 H 0.11 0.88 8.02 -2.39 -0.02 0.87 16 32 H 0.10 1.10 5.12 -2.39 -0.01 1.09 16 33 H 0.07 1.95 7.47 -2.38 -0.02 1.93 16 34 H 0.11 1.82 8.07 -2.39 -0.02 1.80 16 35 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.35 11.16 8.43 -89.70 -0.76 10.41 16 38 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 39 H 0.10 3.24 8.14 -2.39 -0.02 3.22 16 40 H 0.40 19.68 7.90 -92.71 -0.73 18.95 16 41 H 0.28 14.10 8.31 -92.71 -0.77 13.33 16 42 H 0.23 3.00 3.07 -2.91 -0.01 2.99 16 43 H 0.10 0.46 8.14 -2.38 -0.02 0.44 16 44 H 0.10 0.32 7.78 -2.39 -0.02 0.31 16 45 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 46 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 47 H 0.12 0.87 7.85 -2.39 -0.02 0.85 16 48 H 0.08 1.75 6.16 -2.39 -0.01 1.73 16 Total: -1.00 -80.43 392.76 0.44 -79.98 By element: Atomic # 1 Polarization: 39.26 SS G_CDS: -0.48 Total: 38.78 kcal Atomic # 6 Polarization: 24.12 SS G_CDS: 9.34 Total: 33.46 kcal Atomic # 7 Polarization: -133.22 SS G_CDS: -10.33 Total: -143.55 kcal Atomic # 8 Polarization: -53.93 SS G_CDS: -0.11 Total: -54.04 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -80.43 0.44 -79.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268472983.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.128 kcal (2) G-P(sol) polarization free energy of solvation -80.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds