Wall clock time and date at job start Tue Mar 31 2020 21:16:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.37357 * 125.83114 * 2 1 4 4 N 1.29396 * 108.83251 * 180.02562 * 3 2 1 5 5 N 1.40169 * 108.13879 * 0.02562 * 4 3 2 6 6 C 1.46500 * 126.34976 * 179.97438 * 5 4 3 7 7 C 1.53002 * 109.47395 * 270.03021 * 6 5 4 8 8 C 1.50701 * 109.47061 * 179.97438 * 7 6 5 9 9 O 1.21283 * 120.00052 * 359.97438 * 8 7 6 10 10 N 1.34770 * 119.99922 * 179.97438 * 8 7 6 11 11 C 1.46500 * 120.00256 * 180.02562 * 10 8 7 12 12 H 1.08998 * 109.46845 * 325.00694 * 11 10 8 13 13 C 1.53006 * 109.47249 * 84.99846 * 11 10 8 14 14 C 1.52997 * 109.47164 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.46978 * 299.99874 * 14 13 11 16 16 H 1.08992 * 109.47056 * 300.00064 * 15 14 13 17 17 N 1.46505 * 109.46958 * 180.02562 * 15 14 13 18 18 C 1.36939 * 119.99584 * 85.00133 * 17 15 14 19 19 H 1.07993 * 120.00301 * 0.02562 * 18 17 15 20 20 C 1.38813 * 119.99501 * 179.97438 * 18 17 15 21 21 N 1.31620 * 120.00187 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99877 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47101 * 90.00007 * 22 20 18 24 24 H 1.48504 * 109.47431 * 209.99887 * 22 20 18 25 25 H 1.48498 * 109.47164 * 330.00128 * 22 20 18 26 26 C 1.52996 * 109.46891 * 60.00410 * 15 14 13 27 27 C 1.52997 * 109.47473 * 205.00145 * 11 10 8 28 28 C 1.34812 * 125.83405 * 180.34377 * 2 1 3 29 29 O 1.21810 * 126.30689 * 359.97438 * 28 2 1 30 30 H 1.08995 * 109.47481 * 359.96935 * 1 2 3 31 31 H 1.09003 * 109.46781 * 119.97555 * 1 2 3 32 32 H 1.09002 * 109.46563 * 239.96911 * 1 2 3 33 33 H 1.08004 * 125.58307 * 0.02562 * 3 2 1 34 34 H 1.08997 * 109.46875 * 150.02367 * 6 5 4 35 35 H 1.09005 * 109.46740 * 30.03111 * 6 5 4 36 36 H 1.08991 * 109.46961 * 59.99885 * 7 6 5 37 37 H 1.09000 * 109.46564 * 299.99701 * 7 6 5 38 38 H 0.97005 * 120.00370 * 0.02562 * 10 8 7 39 39 H 1.09001 * 109.47002 * 60.00085 * 13 11 10 40 40 H 1.09000 * 109.47050 * 300.00351 * 13 11 10 41 41 H 1.09002 * 109.47045 * 180.02562 * 14 13 11 42 42 H 1.09001 * 109.47375 * 59.99966 * 14 13 11 43 43 H 0.97001 * 119.99745 * 265.00017 * 17 15 14 44 44 H 0.96998 * 120.00284 * 179.97438 * 21 20 18 45 45 H 1.09004 * 109.47368 * 179.97438 * 26 15 14 46 46 H 1.09001 * 109.47372 * 59.99964 * 26 15 14 47 47 H 1.09002 * 109.47153 * 59.99757 * 27 11 10 48 48 H 1.09001 * 109.46832 * 299.99948 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2691 1.1136 0.0000 4 7 3.5065 0.7353 -0.0005 5 7 3.5344 -0.6661 -0.0015 6 6 4.7314 -1.5108 -0.0029 7 6 5.1476 -1.8033 -1.4459 8 6 6.3793 -2.6716 -1.4472 9 8 6.8756 -3.0217 -0.3974 10 7 6.9292 -3.0592 -2.6150 11 6 8.1262 -3.9039 -2.6164 12 1 8.7633 -3.6324 -1.7746 13 6 7.7145 -5.3722 -2.4915 14 6 8.9647 -6.2542 -2.4923 15 6 9.7326 -6.0492 -3.7997 16 1 9.0957 -6.3208 -4.6415 17 7 10.9293 -6.8943 -3.8008 18 6 10.8456 -8.1992 -4.2075 19 1 9.8976 -8.6052 -4.5279 20 6 11.9797 -8.9997 -4.2090 21 7 13.1352 -8.5047 -3.8190 22 14 11.8658 -10.7795 -4.7645 23 1 12.1112 -10.8583 -6.2270 24 1 12.8843 -11.5881 -4.0475 25 1 10.5113 -11.3072 -4.4609 26 6 10.1443 -4.5810 -3.9245 27 6 8.8937 -3.6988 -3.9239 28 6 2.2543 -1.0929 -0.0066 29 8 1.8807 -2.2523 -0.0131 30 1 -0.3634 1.0276 0.0005 31 1 -0.3633 -0.5135 -0.8902 32 1 -0.3632 -0.5143 0.8897 33 1 1.9249 2.1373 0.0004 34 1 4.5153 -2.4479 0.5101 35 1 5.5416 -0.9936 0.5112 36 1 5.3637 -0.8661 -1.9587 37 1 4.3374 -2.3204 -1.9599 38 1 6.5325 -2.7790 -3.4547 39 1 7.0773 -5.6437 -3.3332 40 1 7.1678 -5.5183 -1.5600 41 1 8.6713 -7.3003 -2.4039 42 1 9.6015 -5.9826 -1.6505 43 1 11.7809 -6.5294 -3.5133 44 1 13.9276 -9.0642 -3.8197 45 1 10.6918 -4.4350 -4.8557 46 1 10.7812 -4.3094 -3.0826 47 1 9.1870 -2.6527 -4.0128 48 1 8.2565 -3.9702 -4.7656 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270004029.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:24 Heat of formation + Delta-G solvation = 8.251797 kcal Electronic energy + Delta-G solvation = -28487.707072 eV Core-core repulsion = 24386.592436 eV Total energy + Delta-G solvation = -4101.114637 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.81651 -40.10058 -38.06107 -37.61698 -36.07042 -34.85833 -33.28041 -32.92067 -30.85032 -30.38482 -30.06160 -28.04085 -27.26642 -25.09069 -23.53410 -22.77094 -22.32186 -21.57591 -20.97847 -20.41661 -19.41604 -18.16823 -17.38794 -17.08347 -16.81255 -16.49978 -16.22432 -15.96022 -15.52966 -15.12689 -14.90847 -14.34084 -14.16046 -13.84314 -13.64702 -13.63666 -13.42062 -13.33822 -13.09151 -12.90725 -12.69507 -12.50382 -12.32383 -12.00268 -11.78857 -11.61976 -11.41799 -11.02320 -10.79692 -10.74178 -10.65091 -10.63239 -10.55784 -10.16836 -10.08159 -9.92865 -9.73627 -9.55789 -8.97763 -8.97520 -8.82201 -6.91012 -5.72741 -3.01075 1.32341 1.50637 2.27525 2.51778 2.64131 3.14100 3.45924 3.51260 3.52925 3.95763 4.25033 4.41612 4.48312 4.61256 4.66083 4.69589 4.78909 4.93237 4.95646 5.06428 5.09872 5.26247 5.30266 5.42088 5.51256 5.54797 5.63708 5.70898 5.75455 5.78199 5.87487 5.90461 6.05311 6.09318 6.25967 6.28512 6.32754 6.51073 6.59248 6.67351 6.75719 7.02282 7.18459 7.19078 7.40962 7.64758 7.73937 8.11735 8.46190 9.57107 10.15902 10.50472 11.50041 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.030474 B = 0.001691 C = 0.001645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.604056 B =16554.350080 C =17021.365810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.564 5.564 3 C 0.252 3.748 4 N -0.280 5.280 5 N -0.451 5.451 6 C 0.177 3.823 7 C -0.160 4.160 8 C 0.520 3.480 9 O -0.538 6.538 10 N -0.723 5.723 11 C 0.145 3.855 12 H 0.088 0.912 13 C -0.124 4.124 14 C -0.132 4.132 15 C 0.177 3.823 16 H 0.046 0.954 17 N -0.725 5.725 18 C -0.237 4.237 19 H 0.070 0.930 20 C -0.015 4.015 21 N -0.933 5.933 22 Si 0.905 3.095 23 H -0.290 1.290 24 H -0.292 1.292 25 H -0.282 1.282 26 C -0.120 4.120 27 C -0.118 4.118 28 C 0.641 3.359 29 O -0.550 6.550 30 H 0.093 0.907 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.231 0.769 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.100 0.900 37 H 0.098 0.902 38 H 0.398 0.602 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.063 0.937 42 H 0.056 0.944 43 H 0.383 0.617 44 H 0.254 0.746 45 H 0.068 0.932 46 H 0.062 0.938 47 H 0.062 0.938 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.777 25.675 4.986 36.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.293 5.293 3 C -0.047 4.047 4 N -0.101 5.101 5 N -0.272 5.272 6 C 0.056 3.944 7 C -0.202 4.202 8 C 0.305 3.695 9 O -0.415 6.415 10 N -0.374 5.374 11 C 0.041 3.959 12 H 0.106 0.894 13 C -0.163 4.163 14 C -0.173 4.173 15 C 0.067 3.933 16 H 0.064 0.936 17 N -0.366 5.366 18 C -0.368 4.368 19 H 0.088 0.912 20 C -0.211 4.211 21 N -0.582 5.582 22 Si 0.737 3.263 23 H -0.218 1.218 24 H -0.218 1.218 25 H -0.208 1.208 26 C -0.159 4.159 27 C -0.157 4.157 28 C 0.340 3.660 29 O -0.422 6.422 30 H 0.112 0.888 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.247 0.753 34 H 0.123 0.877 35 H 0.123 0.877 36 H 0.119 0.881 37 H 0.116 0.884 38 H 0.232 0.768 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.082 0.918 42 H 0.075 0.925 43 H 0.217 0.783 44 H 0.064 0.936 45 H 0.086 0.914 46 H 0.081 0.919 47 H 0.081 0.919 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -24.680 24.639 5.688 35.334 hybrid contribution -0.789 -0.890 -0.669 1.364 sum -25.469 23.749 5.019 35.183 Atomic orbital electron populations 1.21813 0.74103 1.04168 1.04055 1.45980 1.08958 1.06728 1.67623 1.25977 0.85878 0.94730 0.98164 1.77022 1.18158 0.92078 1.22861 1.49052 1.06244 1.03066 1.68826 1.21204 0.83312 0.93765 0.96147 1.22047 0.97357 1.01368 0.99380 1.20224 0.84787 0.80353 0.84164 1.90749 1.63122 1.56492 1.31144 1.46155 1.30442 1.52585 1.08190 1.21139 0.85230 0.90167 0.99363 0.89351 1.21899 0.99112 0.93861 1.01450 1.22223 0.95207 0.99035 1.00837 1.20240 0.89647 0.88803 0.94609 0.93637 1.42429 1.05884 1.09353 1.78901 1.19249 0.94453 0.87401 1.35696 0.91232 1.24734 0.95615 0.98294 1.02418 1.69661 0.98936 1.35722 1.53882 0.86211 0.76977 0.85066 0.78076 1.21799 1.21814 1.20812 1.21759 0.96019 0.95815 1.02331 1.21756 0.97700 0.99987 0.96260 1.16823 0.82160 0.85140 0.81829 1.91120 1.77685 1.15173 1.58255 0.88819 0.90411 0.90423 0.75303 0.87685 0.87664 0.88132 0.88403 0.76817 0.92342 0.92328 0.91802 0.92473 0.78311 0.93575 0.91373 0.91947 0.91892 0.91594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.25 11.08 59.85 0.66 0.92 16 2 N -0.56 -3.53 3.14 -130.11 -0.41 -3.94 16 3 C 0.25 1.07 12.61 -89.12 -1.12 -0.06 16 4 N -0.28 -2.20 12.53 29.87 0.37 -1.83 16 5 N -0.45 -4.45 3.63 -65.12 -0.24 -4.69 16 6 C 0.18 1.76 5.68 -4.04 -0.02 1.74 16 7 C -0.16 -1.40 6.02 -27.88 -0.17 -1.57 16 8 C 0.52 6.10 7.79 -10.99 -0.09 6.01 16 9 O -0.54 -8.45 15.64 5.55 0.09 -8.37 16 10 N -0.72 -7.66 5.08 -53.81 -0.27 -7.93 16 11 C 0.14 1.91 2.45 -67.93 -0.17 1.75 16 12 H 0.09 1.35 7.58 -51.93 -0.39 0.96 16 13 C -0.12 -1.88 5.49 -26.73 -0.15 -2.03 16 14 C -0.13 -2.45 5.50 -26.73 -0.15 -2.60 16 15 C 0.18 3.49 2.77 -67.93 -0.19 3.30 16 16 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 17 N -0.73 -18.31 5.12 -53.43 -0.27 -18.58 16 18 C -0.24 -6.64 9.93 -15.06 -0.15 -6.79 16 19 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 20 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 21 N -0.93 -28.53 13.06 55.49 0.72 -27.80 16 22 Si 0.91 22.71 29.55 -169.99 -5.02 17.69 16 23 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 24 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 25 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 26 C -0.12 -1.93 5.39 -26.71 -0.14 -2.08 16 27 C -0.12 -1.46 5.39 -26.71 -0.14 -1.61 16 28 C 0.64 6.94 8.61 -86.73 -0.75 6.19 16 29 O -0.55 -7.99 17.77 5.09 0.09 -7.90 16 30 H 0.09 -0.12 8.07 -51.93 -0.42 -0.54 16 31 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.08 0.23 8.14 -51.93 -0.42 -0.20 16 33 H 0.23 -0.31 8.06 -52.48 -0.42 -0.73 16 34 H 0.10 1.19 8.07 -51.93 -0.42 0.77 16 35 H 0.11 1.02 8.10 -51.93 -0.42 0.60 16 36 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.40 3.03 8.60 -40.82 -0.35 2.68 16 39 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 41 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 42 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.38 10.29 7.80 -40.82 -0.32 9.97 16 44 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 45 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 46 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 47 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 399.26 15.07 6.02 6.02 Total: -1.00 -38.05 399.26 -9.37 -47.42 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -7.78 Total: 7.26 kcal Atomic # 6 Polarization: 5.32 SS G_CDS: -2.67 Total: 2.66 kcal Atomic # 7 Polarization: -64.68 SS G_CDS: -0.09 Total: -64.77 kcal Atomic # 8 Polarization: -16.45 SS G_CDS: 0.18 Total: -16.27 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.02 Total: 17.69 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -38.05 -9.37 -47.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270004029.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.673 kcal (2) G-P(sol) polarization free energy of solvation -38.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.422 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds