Wall clock time and date at job start Tue Mar 31 2020 21:16:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.37357 * 125.83114 * 2 1 4 4 N 1.29396 * 108.83251 * 180.02562 * 3 2 1 5 5 N 1.40169 * 108.13879 * 0.02562 * 4 3 2 6 6 C 1.46500 * 126.34976 * 179.97438 * 5 4 3 7 7 C 1.53002 * 109.47395 * 270.03021 * 6 5 4 8 8 C 1.50701 * 109.47061 * 179.97438 * 7 6 5 9 9 O 1.21283 * 120.00052 * 359.97438 * 8 7 6 10 10 N 1.34770 * 119.99922 * 179.97438 * 8 7 6 11 11 C 1.46500 * 120.00256 * 180.02562 * 10 8 7 12 12 H 1.08998 * 109.46845 * 325.00694 * 11 10 8 13 13 C 1.53006 * 109.47249 * 84.99846 * 11 10 8 14 14 C 1.52997 * 109.47164 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.46978 * 299.99874 * 14 13 11 16 16 H 1.08992 * 109.47056 * 300.00064 * 15 14 13 17 17 N 1.46505 * 109.46958 * 180.02562 * 15 14 13 18 18 C 1.36939 * 119.99584 * 85.00133 * 17 15 14 19 19 H 1.07993 * 120.00301 * 0.02562 * 18 17 15 20 20 C 1.38813 * 119.99501 * 179.97438 * 18 17 15 21 21 N 1.31620 * 120.00187 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99877 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47101 * 90.00007 * 22 20 18 24 24 H 1.48504 * 109.47431 * 209.99887 * 22 20 18 25 25 H 1.48498 * 109.47164 * 330.00128 * 22 20 18 26 26 C 1.52996 * 109.46891 * 60.00410 * 15 14 13 27 27 C 1.52997 * 109.47473 * 205.00145 * 11 10 8 28 28 C 1.34812 * 125.83405 * 180.34377 * 2 1 3 29 29 O 1.21810 * 126.30689 * 359.97438 * 28 2 1 30 30 H 1.08995 * 109.47481 * 359.96935 * 1 2 3 31 31 H 1.09003 * 109.46781 * 119.97555 * 1 2 3 32 32 H 1.09002 * 109.46563 * 239.96911 * 1 2 3 33 33 H 1.08004 * 125.58307 * 0.02562 * 3 2 1 34 34 H 1.08997 * 109.46875 * 150.02367 * 6 5 4 35 35 H 1.09005 * 109.46740 * 30.03111 * 6 5 4 36 36 H 1.08991 * 109.46961 * 59.99885 * 7 6 5 37 37 H 1.09000 * 109.46564 * 299.99701 * 7 6 5 38 38 H 0.97005 * 120.00370 * 0.02562 * 10 8 7 39 39 H 1.09001 * 109.47002 * 60.00085 * 13 11 10 40 40 H 1.09000 * 109.47050 * 300.00351 * 13 11 10 41 41 H 1.09002 * 109.47045 * 180.02562 * 14 13 11 42 42 H 1.09001 * 109.47375 * 59.99966 * 14 13 11 43 43 H 0.97001 * 119.99745 * 265.00017 * 17 15 14 44 44 H 0.96998 * 120.00284 * 179.97438 * 21 20 18 45 45 H 1.09004 * 109.47368 * 179.97438 * 26 15 14 46 46 H 1.09001 * 109.47372 * 59.99964 * 26 15 14 47 47 H 1.09002 * 109.47153 * 59.99757 * 27 11 10 48 48 H 1.09001 * 109.46832 * 299.99948 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2691 1.1136 0.0000 4 7 3.5065 0.7353 -0.0005 5 7 3.5344 -0.6661 -0.0015 6 6 4.7314 -1.5108 -0.0029 7 6 5.1476 -1.8033 -1.4459 8 6 6.3793 -2.6716 -1.4472 9 8 6.8756 -3.0217 -0.3974 10 7 6.9292 -3.0592 -2.6150 11 6 8.1262 -3.9039 -2.6164 12 1 8.7633 -3.6324 -1.7746 13 6 7.7145 -5.3722 -2.4915 14 6 8.9647 -6.2542 -2.4923 15 6 9.7326 -6.0492 -3.7997 16 1 9.0957 -6.3208 -4.6415 17 7 10.9293 -6.8943 -3.8008 18 6 10.8456 -8.1992 -4.2075 19 1 9.8976 -8.6052 -4.5279 20 6 11.9797 -8.9997 -4.2090 21 7 13.1352 -8.5047 -3.8190 22 14 11.8658 -10.7795 -4.7645 23 1 12.1112 -10.8583 -6.2270 24 1 12.8843 -11.5881 -4.0475 25 1 10.5113 -11.3072 -4.4609 26 6 10.1443 -4.5810 -3.9245 27 6 8.8937 -3.6988 -3.9239 28 6 2.2543 -1.0929 -0.0066 29 8 1.8807 -2.2523 -0.0131 30 1 -0.3634 1.0276 0.0005 31 1 -0.3633 -0.5135 -0.8902 32 1 -0.3632 -0.5143 0.8897 33 1 1.9249 2.1373 0.0004 34 1 4.5153 -2.4479 0.5101 35 1 5.5416 -0.9936 0.5112 36 1 5.3637 -0.8661 -1.9587 37 1 4.3374 -2.3204 -1.9599 38 1 6.5325 -2.7790 -3.4547 39 1 7.0773 -5.6437 -3.3332 40 1 7.1678 -5.5183 -1.5600 41 1 8.6713 -7.3003 -2.4039 42 1 9.6015 -5.9826 -1.6505 43 1 11.7809 -6.5294 -3.5133 44 1 13.9276 -9.0642 -3.8197 45 1 10.6918 -4.4350 -4.8557 46 1 10.7812 -4.3094 -3.0826 47 1 9.1870 -2.6527 -4.0128 48 1 8.2565 -3.9702 -4.7656 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270004029.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:23 Heat of formation + Delta-G solvation = -18.665506 kcal Electronic energy + Delta-G solvation = -28488.874294 eV Core-core repulsion = 24386.592436 eV Total energy + Delta-G solvation = -4102.281859 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.39795 -41.14282 -39.36979 -38.42072 -36.75220 -36.31577 -34.67203 -33.80313 -32.47262 -31.69449 -30.96093 -29.02515 -28.18477 -26.05351 -25.23571 -23.67344 -23.33856 -22.50737 -22.04280 -21.43264 -20.81530 -19.16112 -18.78211 -18.01172 -17.65765 -17.31599 -17.10342 -16.82485 -16.69364 -16.34663 -15.86743 -15.50528 -15.39557 -15.06048 -14.96335 -14.88312 -14.45116 -14.17757 -13.98301 -13.89125 -13.46493 -13.45347 -13.25913 -13.13972 -13.09037 -12.88881 -12.83889 -12.43316 -12.40051 -12.28541 -12.15624 -12.04192 -11.66942 -11.46839 -11.37360 -11.21262 -11.15380 -10.90103 -10.80087 -10.04624 -9.66075 -8.99577 -7.93869 -5.21894 0.72737 1.10187 1.45988 1.47721 1.55090 1.55963 1.57622 2.08366 2.35608 2.56261 3.38863 3.45367 3.61235 3.74250 3.79725 3.87971 3.94770 4.00618 4.13855 4.28776 4.31693 4.34714 4.37015 4.40242 4.50305 4.53551 4.59275 4.64652 4.67099 4.70938 4.82502 4.86962 4.97020 4.99917 5.10035 5.11767 5.13783 5.25039 5.27537 5.47111 5.53289 5.54931 5.63476 5.70659 6.29003 6.53823 6.64156 6.94059 7.23302 7.34410 8.12237 8.34685 9.29772 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.030474 B = 0.001691 C = 0.001645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.604056 B =16554.350080 C =17021.365810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.558 5.558 3 C 0.280 3.720 4 N -0.315 5.315 5 N -0.457 5.457 6 C 0.177 3.823 7 C -0.141 4.141 8 C 0.519 3.481 9 O -0.582 6.582 10 N -0.708 5.708 11 C 0.152 3.848 12 H 0.067 0.933 13 C -0.113 4.113 14 C -0.123 4.123 15 C 0.172 3.828 16 H 0.047 0.953 17 N -0.739 5.739 18 C -0.238 4.238 19 H 0.074 0.926 20 C -0.078 4.078 21 N -0.970 5.970 22 Si 0.971 3.029 23 H -0.285 1.285 24 H -0.297 1.297 25 H -0.272 1.272 26 C -0.113 4.113 27 C -0.104 4.104 28 C 0.623 3.377 29 O -0.601 6.601 30 H 0.143 0.857 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.290 0.710 34 H 0.080 0.920 35 H 0.104 0.896 36 H 0.126 0.874 37 H 0.103 0.897 38 H 0.418 0.582 39 H 0.074 0.926 40 H 0.046 0.954 41 H 0.038 0.962 42 H 0.039 0.961 43 H 0.371 0.629 44 H 0.250 0.750 45 H 0.068 0.932 46 H 0.053 0.947 47 H 0.090 0.910 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.392 28.638 3.567 40.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.286 5.286 3 C -0.017 4.017 4 N -0.136 5.136 5 N -0.277 5.277 6 C 0.056 3.944 7 C -0.182 4.182 8 C 0.306 3.694 9 O -0.462 6.462 10 N -0.360 5.360 11 C 0.047 3.953 12 H 0.085 0.915 13 C -0.153 4.153 14 C -0.164 4.164 15 C 0.064 3.936 16 H 0.065 0.935 17 N -0.378 5.378 18 C -0.370 4.370 19 H 0.092 0.908 20 C -0.270 4.270 21 N -0.621 5.621 22 Si 0.800 3.200 23 H -0.212 1.212 24 H -0.224 1.224 25 H -0.197 1.197 26 C -0.152 4.152 27 C -0.143 4.143 28 C 0.322 3.678 29 O -0.478 6.478 30 H 0.161 0.839 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.305 0.695 34 H 0.098 0.902 35 H 0.122 0.878 36 H 0.144 0.856 37 H 0.122 0.878 38 H 0.255 0.745 39 H 0.093 0.907 40 H 0.064 0.936 41 H 0.057 0.943 42 H 0.058 0.942 43 H 0.203 0.797 44 H 0.059 0.941 45 H 0.086 0.914 46 H 0.072 0.928 47 H 0.109 0.891 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -27.378 27.678 4.231 39.161 hybrid contribution -0.094 -1.697 -0.170 1.708 sum -27.472 25.981 4.061 38.029 Atomic orbital electron populations 1.22161 0.71856 1.07241 1.03485 1.46192 1.10190 1.05988 1.66201 1.27203 0.84403 0.96066 0.94057 1.77059 1.20328 0.90330 1.25924 1.49018 1.05724 1.04228 1.68687 1.21033 0.83594 0.93031 0.96790 1.21899 0.95705 1.01769 0.98830 1.20716 0.85124 0.79975 0.83608 1.90740 1.64498 1.58150 1.32831 1.45920 1.29463 1.51624 1.08964 1.20851 0.86014 0.89072 0.99324 0.91524 1.21772 0.97238 0.94754 1.01494 1.22029 0.96421 0.98366 0.99564 1.20495 0.87921 0.90441 0.94765 0.93502 1.42666 1.07101 1.09270 1.78774 1.19629 0.94451 0.88665 1.34218 0.90788 1.25542 0.95470 1.02411 1.03584 1.69818 0.99470 1.36995 1.55852 0.85174 0.77048 0.80204 0.77561 1.21185 1.22367 1.19717 1.21648 0.97860 0.93761 1.01947 1.21654 0.95865 1.00651 0.96109 1.17177 0.82965 0.85527 0.82154 1.91062 1.78605 1.17477 1.60687 0.83880 0.90916 0.91188 0.69462 0.90163 0.87821 0.85584 0.87835 0.74498 0.90725 0.93559 0.94290 0.94221 0.79699 0.94133 0.91378 0.92820 0.89102 0.89466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.23 11.08 127.77 1.42 1.64 16 2 N -0.56 -5.75 3.14 -683.69 -2.15 -7.90 16 3 C 0.28 1.34 12.61 179.83 2.27 3.61 16 4 N -0.32 -4.27 12.53 -59.42 -0.74 -5.01 16 5 N -0.46 -8.80 3.63 -478.01 -1.73 -10.53 16 6 C 0.18 3.60 5.68 86.38 0.49 4.09 16 7 C -0.14 -2.31 6.02 29.85 0.18 -2.13 16 8 C 0.52 11.75 7.79 87.66 0.68 12.43 16 9 O -0.58 -18.68 15.64 -3.04 -0.05 -18.73 16 10 N -0.71 -13.46 5.08 -442.53 -2.25 -15.71 16 11 C 0.15 3.82 2.45 44.99 0.11 3.93 16 12 H 0.07 2.02 7.58 -2.39 -0.02 2.00 16 13 C -0.11 -3.39 5.49 30.60 0.17 -3.22 16 14 C -0.12 -4.67 5.50 30.59 0.17 -4.51 16 15 C 0.17 6.79 2.77 44.99 0.12 6.91 16 16 H 0.05 1.85 8.08 -2.39 -0.02 1.83 16 17 N -0.74 -38.10 5.12 -322.95 -1.65 -39.75 16 18 C -0.24 -13.49 9.93 84.03 0.83 -12.66 16 19 H 0.07 4.05 7.83 -2.91 -0.02 4.02 16 20 C -0.08 -4.59 5.50 84.86 0.47 -4.12 16 21 N -0.97 -60.71 13.06 21.65 0.28 -60.43 16 22 Si 0.97 47.27 29.55 68.60 2.03 49.30 16 23 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 24 H -0.30 -14.60 7.11 99.48 0.71 -13.89 16 25 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 26 C -0.11 -3.53 5.39 30.61 0.17 -3.37 16 27 C -0.10 -2.28 5.39 30.61 0.17 -2.12 16 28 C 0.62 13.36 8.61 178.99 1.54 14.90 16 29 O -0.60 -18.23 17.77 -4.70 -0.08 -18.31 16 30 H 0.14 -1.08 8.07 -2.39 -0.02 -1.10 16 31 H 0.07 0.29 8.14 -2.39 -0.02 0.27 16 32 H 0.07 0.31 8.14 -2.39 -0.02 0.29 16 33 H 0.29 -2.58 8.06 -2.91 -0.02 -2.60 16 34 H 0.08 1.99 8.07 -2.39 -0.02 1.97 16 35 H 0.10 2.07 8.10 -2.38 -0.02 2.06 16 36 H 0.13 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.42 4.86 8.60 -92.70 -0.80 4.07 16 39 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 40 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.04 1.61 8.14 -2.39 -0.02 1.60 16 43 H 0.37 20.61 7.80 -92.71 -0.72 19.88 16 44 H 0.25 15.18 8.31 -92.71 -0.77 14.41 16 45 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 46 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 47 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 48 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -88.31 399.26 1.89 -86.43 By element: Atomic # 1 Polarization: 25.80 SS G_CDS: -0.55 Total: 25.25 kcal Atomic # 6 Polarization: 6.62 SS G_CDS: 8.78 Total: 15.40 kcal Atomic # 7 Polarization: -131.09 SS G_CDS: -8.24 Total: -139.33 kcal Atomic # 8 Polarization: -36.91 SS G_CDS: -0.13 Total: -37.04 kcal Atomic # 14 Polarization: 47.27 SS G_CDS: 2.03 Total: 49.30 kcal Total: -88.31 1.89 -86.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270004029.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.760 kcal (2) G-P(sol) polarization free energy of solvation -88.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds