Wall clock time and date at job start Tue Mar 31 2020 21:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.37363 * 125.82976 * 2 1 4 4 N 1.29398 * 108.82638 * 179.76807 * 3 2 1 5 5 N 1.40174 * 108.14224 * 0.38983 * 4 3 2 6 6 C 1.46497 * 126.34971 * 179.87631 * 5 4 3 7 7 C 1.50703 * 109.46880 * 269.68727 * 6 5 4 8 8 O 1.21281 * 120.00309 * 359.97438 * 7 6 5 9 9 N 1.34778 * 119.99698 * 180.02562 * 7 6 5 10 10 C 1.46500 * 119.99579 * 185.02614 * 9 7 6 11 11 H 1.08997 * 109.47357 * 355.27512 * 10 9 7 12 12 C 1.53008 * 109.47257 * 235.27787 * 10 9 7 13 13 N 1.46494 * 109.46818 * 54.99773 * 12 10 9 14 14 C 1.36939 * 119.99790 * 179.97438 * 13 12 10 15 15 H 1.08001 * 120.00226 * 0.02562 * 14 13 12 16 16 C 1.38812 * 119.99980 * 180.02562 * 14 13 12 17 17 N 1.31618 * 120.00136 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 120.00103 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.46976 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.46787 * 120.00494 * 18 16 14 21 21 H 1.48499 * 109.47016 * 240.00290 * 18 16 14 22 22 C 1.53005 * 109.47013 * 115.28046 * 10 9 7 23 23 C 1.54266 * 110.03242 * 55.37594 * 22 10 9 24 24 C 1.54886 * 104.19490 * 217.10455 * 23 22 10 25 25 C 1.54886 * 102.74879 * 37.94334 * 24 23 22 26 26 C 1.53874 * 110.03011 * 298.20731 * 22 10 9 27 27 C 1.34812 * 125.83618 * 180.02562 * 2 1 3 28 28 O 1.21817 * 126.30133 * 359.97438 * 27 2 1 29 29 H 1.09002 * 109.47205 * 269.97397 * 1 2 3 30 30 H 1.08996 * 109.47270 * 29.97710 * 1 2 3 31 31 H 1.09001 * 109.46706 * 149.97498 * 1 2 3 32 32 H 1.07998 * 125.58778 * 0.02562 * 3 2 1 33 33 H 1.09000 * 109.47591 * 149.68825 * 6 5 4 34 34 H 1.09006 * 109.47269 * 29.68136 * 6 5 4 35 35 H 0.96997 * 120.00384 * 5.03328 * 9 7 6 36 36 H 1.08993 * 109.47469 * 175.00256 * 12 10 9 37 37 H 1.09001 * 109.46748 * 295.00432 * 12 10 9 38 38 H 0.96999 * 120.00277 * 0.02562 * 13 12 10 39 39 H 0.96996 * 120.00145 * 179.97438 * 17 16 14 40 40 H 1.09001 * 110.01459 * 176.81800 * 22 10 9 41 41 H 1.09000 * 110.48912 * 335.78773 * 23 22 10 42 42 H 1.09000 * 110.48604 * 98.42527 * 23 22 10 43 43 H 1.08998 * 110.75733 * 279.62641 * 24 23 22 44 44 H 1.09008 * 110.75598 * 156.25467 * 24 23 22 45 45 H 1.09000 * 110.48791 * 203.37750 * 25 24 23 46 46 H 1.09005 * 110.60235 * 80.79140 * 25 24 23 47 47 H 1.08996 * 110.03266 * 238.56877 * 26 22 10 48 48 H 1.09003 * 110.03198 * 359.95553 * 26 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2691 1.1137 0.0000 4 7 3.5065 0.7353 0.0050 5 7 3.5344 -0.6662 -0.0007 6 6 4.7314 -1.5108 -0.0004 7 6 5.1417 -1.8009 -1.4212 8 8 4.4975 -1.3473 -2.3432 9 7 6.2241 -2.5655 -1.6672 10 6 6.6878 -2.7572 -3.0436 11 1 5.9906 -2.2794 -3.7318 12 6 6.7641 -4.2539 -3.3523 13 7 5.4653 -4.8751 -3.0815 14 6 5.2926 -6.2179 -3.2868 15 1 6.1140 -6.8191 -3.6478 16 6 4.0618 -6.8065 -3.0307 17 7 3.0606 -6.0738 -2.5912 18 14 3.8263 -8.6385 -3.3100 19 1 5.0957 -9.2313 -3.8024 20 1 3.4400 -9.2884 -2.0319 21 1 2.7562 -8.8522 -4.3172 22 6 8.0746 -2.1316 -3.2063 23 6 9.0445 -2.7167 -2.1591 24 6 9.9354 -1.5163 -1.7539 25 6 8.9334 -0.3352 -1.7439 26 6 8.0039 -0.6173 -2.9424 27 6 2.2543 -1.0929 -0.0005 28 8 1.8807 -2.2524 -0.0006 29 1 -0.3634 -0.0005 1.0277 30 1 -0.3633 0.8901 -0.5135 31 1 -0.3633 -0.8898 -0.5142 32 1 1.9250 2.1374 0.0004 33 1 4.5152 -2.4473 0.5137 34 1 5.5415 -0.9929 0.5131 35 1 6.6959 -2.9888 -0.9331 36 1 7.0231 -4.3958 -4.4014 37 1 7.5258 -4.7159 -2.7243 38 1 4.7275 -4.3351 -2.7576 39 1 2.2005 -6.4850 -2.4127 40 1 8.4524 -2.3181 -4.2116 41 1 8.4937 -3.0915 -1.2964 42 1 9.6494 -3.5090 -2.6001 43 1 10.7200 -1.3510 -2.4922 44 1 10.3621 -1.6692 -0.7626 45 1 9.4573 0.6107 -1.8819 46 1 8.3643 -0.3228 -0.8143 47 1 8.3483 -0.0690 -3.8191 48 1 6.9815 -0.3280 -2.6991 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270415328.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:02 Heat of formation + Delta-G solvation = 23.968176 kcal Electronic energy + Delta-G solvation = -30725.001030 eV Core-core repulsion = 26624.567907 eV Total energy + Delta-G solvation = -4100.433123 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.26426 -39.90012 -37.96707 -37.00442 -35.33950 -34.92855 -33.38920 -31.93883 -31.03805 -29.71110 -28.65095 -28.17276 -26.80784 -26.03111 -23.35369 -22.67625 -21.54644 -21.36802 -20.64589 -20.00248 -19.16618 -17.60276 -17.36648 -17.07037 -16.20668 -16.04282 -15.86124 -15.68608 -15.31483 -14.73324 -14.57451 -14.47124 -14.23528 -13.69319 -13.42043 -13.25888 -13.19138 -13.09628 -12.80962 -12.75369 -12.33925 -12.13243 -11.95744 -11.76307 -11.63066 -11.11485 -11.01953 -10.96890 -10.77678 -10.61186 -10.56341 -10.45843 -10.39008 -10.19678 -10.05864 -9.93512 -9.62439 -9.42214 -8.79261 -8.55719 -8.38111 -6.80850 -5.62113 -2.93385 1.77255 2.01955 2.88851 2.98641 3.15499 3.49621 3.54052 3.57501 3.62181 4.46617 4.61123 4.69016 4.70793 4.72703 4.83087 4.95453 5.00301 5.13719 5.22017 5.32235 5.43759 5.47464 5.49110 5.53216 5.66538 5.67751 5.71354 5.77528 5.88607 5.90409 5.96999 5.99917 6.11151 6.19535 6.20021 6.30948 6.35162 6.41166 6.52972 6.56668 6.58208 6.76915 7.03686 7.70625 7.78966 7.85651 8.25855 8.53501 8.60368 9.64836 10.23828 10.58414 11.58851 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.006940 B = 0.005167 C = 0.003111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4033.644206 B = 5417.356139 C = 8999.200987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.563 5.563 3 C 0.250 3.750 4 N -0.277 5.277 5 N -0.436 5.436 6 C 0.144 3.856 7 C 0.504 3.496 8 O -0.527 6.527 9 N -0.704 5.704 10 C 0.140 3.860 11 H 0.098 0.902 12 C 0.144 3.856 13 N -0.729 5.729 14 C -0.245 4.245 15 H 0.069 0.931 16 C -0.011 4.011 17 N -0.922 5.922 18 Si 0.903 3.097 19 H -0.281 1.281 20 H -0.292 1.292 21 H -0.292 1.292 22 C -0.098 4.098 23 C -0.117 4.117 24 C -0.124 4.124 25 C -0.120 4.120 26 C -0.118 4.118 27 C 0.648 3.352 28 O -0.531 6.531 29 H 0.071 0.929 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.228 0.772 33 H 0.125 0.875 34 H 0.119 0.881 35 H 0.398 0.602 36 H 0.026 0.974 37 H 0.023 0.977 38 H 0.387 0.613 39 H 0.254 0.746 40 H 0.080 0.920 41 H 0.067 0.933 42 H 0.066 0.934 43 H 0.063 0.937 44 H 0.062 0.938 45 H 0.058 0.942 46 H 0.062 0.938 47 H 0.058 0.942 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.742 19.073 8.025 21.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.293 5.293 3 C -0.049 4.049 4 N -0.098 5.098 5 N -0.257 5.257 6 C 0.018 3.982 7 C 0.287 3.713 8 O -0.402 6.402 9 N -0.356 5.356 10 C 0.035 3.965 11 H 0.116 0.884 12 C 0.015 3.985 13 N -0.374 5.374 14 C -0.376 4.376 15 H 0.087 0.913 16 C -0.208 4.208 17 N -0.569 5.569 18 Si 0.735 3.265 19 H -0.206 1.206 20 H -0.219 1.219 21 H -0.220 1.220 22 C -0.118 4.118 23 C -0.154 4.154 24 C -0.162 4.162 25 C -0.157 4.157 26 C -0.156 4.156 27 C 0.347 3.653 28 O -0.401 6.401 29 H 0.089 0.911 30 H 0.104 0.896 31 H 0.107 0.893 32 H 0.244 0.756 33 H 0.143 0.857 34 H 0.137 0.863 35 H 0.233 0.767 36 H 0.043 0.957 37 H 0.040 0.960 38 H 0.221 0.779 39 H 0.065 0.935 40 H 0.099 0.901 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.082 0.918 44 H 0.081 0.919 45 H 0.077 0.923 46 H 0.080 0.920 47 H 0.077 0.923 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 6.035 18.629 7.311 20.903 hybrid contribution -1.031 -1.278 0.153 1.649 sum 5.004 17.351 7.464 19.540 Atomic orbital electron populations 1.21784 0.74402 1.04796 1.03171 1.45844 1.08718 1.06670 1.68112 1.25790 0.85962 0.94641 0.98494 1.76865 1.18266 0.91943 1.22744 1.48108 1.05480 1.02755 1.69318 1.21199 0.85496 0.95309 0.96168 1.20683 0.80561 0.78783 0.91228 1.90719 1.52017 1.51881 1.45577 1.45692 1.29949 1.50409 1.09552 1.21331 0.94598 0.97191 0.83402 0.88389 1.20997 0.90372 0.89368 0.97737 1.42325 1.08267 1.06785 1.79975 1.19210 0.96055 0.84816 1.37545 0.91308 1.24781 0.96167 0.97691 1.02170 1.69712 1.02147 1.34226 1.50858 0.86180 0.77441 0.85658 0.77262 1.20639 1.21949 1.21963 1.22115 0.95045 0.94813 0.99845 1.22402 0.96956 0.97347 0.98738 1.22494 0.97572 0.95276 1.00808 1.22308 0.97054 0.97827 0.98559 1.22153 1.00248 0.95395 0.97794 1.16732 0.81970 0.85143 0.81414 1.91215 1.77202 1.14878 1.56828 0.91087 0.89567 0.89285 0.75616 0.85743 0.86272 0.76689 0.95655 0.95950 0.77887 0.93543 0.90116 0.91479 0.91507 0.91828 0.91950 0.92334 0.91957 0.92347 0.91452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.87 11.05 59.85 0.66 1.53 16 2 N -0.56 -7.23 3.14 -130.11 -0.41 -7.64 16 3 C 0.25 2.53 12.66 -89.12 -1.13 1.40 16 4 N -0.28 -3.75 12.53 29.87 0.37 -3.38 16 5 N -0.44 -7.12 3.11 -66.31 -0.21 -7.33 16 6 C 0.14 2.12 6.87 -5.19 -0.04 2.09 16 7 C 0.50 8.99 7.07 -10.98 -0.08 8.91 16 8 O -0.53 -11.75 15.75 5.56 0.09 -11.66 16 9 N -0.70 -11.13 3.67 -53.80 -0.20 -11.33 16 10 C 0.14 2.36 2.03 -67.92 -0.14 2.22 16 11 H 0.10 1.97 6.91 -51.93 -0.36 1.61 16 12 C 0.14 2.92 5.85 -4.04 -0.02 2.90 16 13 N -0.73 -19.37 5.43 -59.91 -0.33 -19.69 16 14 C -0.24 -7.15 9.99 -15.06 -0.15 -7.30 16 15 H 0.07 1.94 7.83 -52.49 -0.41 1.52 16 16 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 17 N -0.92 -30.01 13.06 55.49 0.72 -29.29 16 18 Si 0.90 23.43 29.55 -169.99 -5.02 18.40 16 19 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 20 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 21 H -0.29 -7.65 7.11 56.52 0.40 -7.25 16 22 C -0.10 -1.27 2.80 -89.50 -0.25 -1.52 16 23 C -0.12 -1.31 5.18 -25.07 -0.13 -1.44 16 24 C -0.12 -1.18 6.91 -24.74 -0.17 -1.35 16 25 C -0.12 -1.21 6.83 -25.07 -0.17 -1.38 16 26 C -0.12 -1.44 6.21 -25.61 -0.16 -1.60 16 27 C 0.65 11.85 8.60 -86.74 -0.75 11.11 16 28 O -0.53 -12.28 17.71 5.08 0.09 -12.19 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.09 0.96 8.08 -51.93 -0.42 0.54 16 32 H 0.23 0.88 8.06 -52.49 -0.42 0.46 16 33 H 0.12 1.83 8.11 -51.93 -0.42 1.41 16 34 H 0.12 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.40 5.39 7.15 -40.82 -0.29 5.10 16 36 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.02 0.44 7.24 -51.93 -0.38 0.06 16 38 H 0.39 11.31 7.31 -40.82 -0.30 11.01 16 39 H 0.25 8.07 8.31 -40.82 -0.34 7.73 16 40 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.07 0.76 6.04 -51.93 -0.31 0.45 16 42 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.06 0.54 8.14 -51.92 -0.42 0.11 16 45 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 48 H 0.07 0.98 6.71 -51.93 -0.35 0.63 16 LS Contribution 394.14 15.07 5.94 5.94 Total: -1.00 -41.78 394.14 -9.01 -50.79 By element: Atomic # 1 Polarization: 19.70 SS G_CDS: -7.45 Total: 12.25 kcal Atomic # 6 Polarization: 17.75 SS G_CDS: -2.62 Total: 15.13 kcal Atomic # 7 Polarization: -78.61 SS G_CDS: -0.04 Total: -78.65 kcal Atomic # 8 Polarization: -24.03 SS G_CDS: 0.18 Total: -23.85 kcal Atomic # 14 Polarization: 23.43 SS G_CDS: -5.02 Total: 18.40 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -41.78 -9.01 -50.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270415328.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.753 kcal (2) G-P(sol) polarization free energy of solvation -41.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds