Wall clock time and date at job start Tue Mar 31 2020 21:16:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.37363 * 125.82976 * 2 1 4 4 N 1.29398 * 108.82638 * 179.76807 * 3 2 1 5 5 N 1.40174 * 108.14224 * 0.38983 * 4 3 2 6 6 C 1.46497 * 126.34971 * 179.87631 * 5 4 3 7 7 C 1.50703 * 109.46880 * 269.68727 * 6 5 4 8 8 O 1.21281 * 120.00309 * 359.97438 * 7 6 5 9 9 N 1.34778 * 119.99698 * 180.02562 * 7 6 5 10 10 C 1.46500 * 119.99579 * 185.02614 * 9 7 6 11 11 H 1.08997 * 109.47357 * 355.27512 * 10 9 7 12 12 C 1.53008 * 109.47257 * 235.27787 * 10 9 7 13 13 N 1.46494 * 109.46818 * 54.99773 * 12 10 9 14 14 C 1.36939 * 119.99790 * 179.97438 * 13 12 10 15 15 H 1.08001 * 120.00226 * 0.02562 * 14 13 12 16 16 C 1.38812 * 119.99980 * 180.02562 * 14 13 12 17 17 N 1.31618 * 120.00136 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 120.00103 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.46976 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.46787 * 120.00494 * 18 16 14 21 21 H 1.48499 * 109.47016 * 240.00290 * 18 16 14 22 22 C 1.53005 * 109.47013 * 115.28046 * 10 9 7 23 23 C 1.54266 * 110.03242 * 55.37594 * 22 10 9 24 24 C 1.54886 * 104.19490 * 217.10455 * 23 22 10 25 25 C 1.54886 * 102.74879 * 37.94334 * 24 23 22 26 26 C 1.53874 * 110.03011 * 298.20731 * 22 10 9 27 27 C 1.34812 * 125.83618 * 180.02562 * 2 1 3 28 28 O 1.21817 * 126.30133 * 359.97438 * 27 2 1 29 29 H 1.09002 * 109.47205 * 269.97397 * 1 2 3 30 30 H 1.08996 * 109.47270 * 29.97710 * 1 2 3 31 31 H 1.09001 * 109.46706 * 149.97498 * 1 2 3 32 32 H 1.07998 * 125.58778 * 0.02562 * 3 2 1 33 33 H 1.09000 * 109.47591 * 149.68825 * 6 5 4 34 34 H 1.09006 * 109.47269 * 29.68136 * 6 5 4 35 35 H 0.96997 * 120.00384 * 5.03328 * 9 7 6 36 36 H 1.08993 * 109.47469 * 175.00256 * 12 10 9 37 37 H 1.09001 * 109.46748 * 295.00432 * 12 10 9 38 38 H 0.96999 * 120.00277 * 0.02562 * 13 12 10 39 39 H 0.96996 * 120.00145 * 179.97438 * 17 16 14 40 40 H 1.09001 * 110.01459 * 176.81800 * 22 10 9 41 41 H 1.09000 * 110.48912 * 335.78773 * 23 22 10 42 42 H 1.09000 * 110.48604 * 98.42527 * 23 22 10 43 43 H 1.08998 * 110.75733 * 279.62641 * 24 23 22 44 44 H 1.09008 * 110.75598 * 156.25467 * 24 23 22 45 45 H 1.09000 * 110.48791 * 203.37750 * 25 24 23 46 46 H 1.09005 * 110.60235 * 80.79140 * 25 24 23 47 47 H 1.08996 * 110.03266 * 238.56877 * 26 22 10 48 48 H 1.09003 * 110.03198 * 359.95553 * 26 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2691 1.1137 0.0000 4 7 3.5065 0.7353 0.0050 5 7 3.5344 -0.6662 -0.0007 6 6 4.7314 -1.5108 -0.0004 7 6 5.1417 -1.8009 -1.4212 8 8 4.4975 -1.3473 -2.3432 9 7 6.2241 -2.5655 -1.6672 10 6 6.6878 -2.7572 -3.0436 11 1 5.9906 -2.2794 -3.7318 12 6 6.7641 -4.2539 -3.3523 13 7 5.4653 -4.8751 -3.0815 14 6 5.2926 -6.2179 -3.2868 15 1 6.1140 -6.8191 -3.6478 16 6 4.0618 -6.8065 -3.0307 17 7 3.0606 -6.0738 -2.5912 18 14 3.8263 -8.6385 -3.3100 19 1 5.0957 -9.2313 -3.8024 20 1 3.4400 -9.2884 -2.0319 21 1 2.7562 -8.8522 -4.3172 22 6 8.0746 -2.1316 -3.2063 23 6 9.0445 -2.7167 -2.1591 24 6 9.9354 -1.5163 -1.7539 25 6 8.9334 -0.3352 -1.7439 26 6 8.0039 -0.6173 -2.9424 27 6 2.2543 -1.0929 -0.0005 28 8 1.8807 -2.2524 -0.0006 29 1 -0.3634 -0.0005 1.0277 30 1 -0.3633 0.8901 -0.5135 31 1 -0.3633 -0.8898 -0.5142 32 1 1.9250 2.1374 0.0004 33 1 4.5152 -2.4473 0.5137 34 1 5.5415 -0.9929 0.5131 35 1 6.6959 -2.9888 -0.9331 36 1 7.0231 -4.3958 -4.4014 37 1 7.5258 -4.7159 -2.7243 38 1 4.7275 -4.3351 -2.7576 39 1 2.2005 -6.4850 -2.4127 40 1 8.4524 -2.3181 -4.2116 41 1 8.4937 -3.0915 -1.2964 42 1 9.6494 -3.5090 -2.6001 43 1 10.7200 -1.3510 -2.4922 44 1 10.3621 -1.6692 -0.7626 45 1 9.4573 0.6107 -1.8819 46 1 8.3643 -0.3228 -0.8143 47 1 8.3483 -0.0690 -3.8191 48 1 6.9815 -0.3280 -2.6991 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270415328.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:01 Heat of formation + Delta-G solvation = -6.406375 kcal Electronic energy + Delta-G solvation = -30726.318169 eV Core-core repulsion = 26624.567907 eV Total energy + Delta-G solvation = -4101.750263 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.38145 -41.23979 -39.16691 -38.41129 -36.83804 -36.16402 -35.14454 -33.34430 -32.66726 -31.19506 -29.57644 -29.26888 -27.87682 -27.53653 -25.17443 -23.86451 -22.96465 -22.54085 -21.88072 -21.05348 -20.36897 -19.24338 -18.71429 -18.58683 -17.41856 -17.25105 -17.07838 -16.87799 -16.55428 -16.46213 -15.93500 -15.68689 -15.42600 -15.19184 -15.03064 -14.88463 -14.34812 -14.12064 -14.09087 -13.75298 -13.56901 -13.47223 -13.26576 -13.11055 -12.97836 -12.90726 -12.82017 -12.14226 -12.02234 -11.88800 -11.82298 -11.68848 -11.59367 -11.50561 -11.41449 -11.40767 -11.32085 -11.00295 -10.70882 -9.98156 -9.62592 -9.02316 -7.94002 -5.25986 0.67042 1.11649 1.41917 1.44487 1.54756 1.57179 1.61000 2.15408 2.39138 2.53347 3.38274 3.47730 3.55532 3.68689 3.77782 3.85251 4.06517 4.08525 4.12615 4.17106 4.23953 4.38828 4.43206 4.51103 4.58968 4.63586 4.71537 4.76401 4.79793 4.87354 4.89681 4.90697 4.93184 5.00685 5.08789 5.15926 5.18731 5.33733 5.40673 5.44848 5.50515 5.57665 5.62349 5.72363 6.23042 6.51680 6.63208 6.97548 7.24242 7.29762 8.07387 8.29228 9.28145 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.006940 B = 0.005167 C = 0.003111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4033.644206 B = 5417.356139 C = 8999.200987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.559 5.559 3 C 0.277 3.723 4 N -0.305 5.305 5 N -0.443 5.443 6 C 0.144 3.856 7 C 0.499 3.501 8 O -0.579 6.579 9 N -0.691 5.691 10 C 0.151 3.849 11 H 0.059 0.941 12 C 0.142 3.858 13 N -0.744 5.744 14 C -0.243 4.243 15 H 0.082 0.918 16 C -0.080 4.080 17 N -0.969 5.969 18 Si 0.976 3.024 19 H -0.258 1.258 20 H -0.294 1.294 21 H -0.298 1.298 22 C -0.090 4.090 23 C -0.117 4.117 24 C -0.114 4.114 25 C -0.115 4.115 26 C -0.115 4.115 27 C 0.623 3.377 28 O -0.600 6.600 29 H 0.093 0.907 30 H 0.134 0.866 31 H 0.057 0.943 32 H 0.294 0.706 33 H 0.118 0.882 34 H 0.165 0.835 35 H 0.411 0.589 36 H 0.026 0.974 37 H 0.044 0.956 38 H 0.369 0.631 39 H 0.246 0.754 40 H 0.086 0.914 41 H 0.065 0.935 42 H 0.072 0.928 43 H 0.073 0.927 44 H 0.078 0.922 45 H 0.072 0.928 46 H 0.063 0.937 47 H 0.065 0.935 48 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.827 20.779 8.861 23.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.287 5.287 3 C -0.021 4.021 4 N -0.126 5.126 5 N -0.261 5.261 6 C 0.018 3.982 7 C 0.285 3.715 8 O -0.458 6.458 9 N -0.344 5.344 10 C 0.046 3.954 11 H 0.078 0.922 12 C 0.015 3.985 13 N -0.387 5.387 14 C -0.375 4.375 15 H 0.100 0.900 16 C -0.272 4.272 17 N -0.620 5.620 18 Si 0.805 3.195 19 H -0.182 1.182 20 H -0.221 1.221 21 H -0.225 1.225 22 C -0.110 4.110 23 C -0.154 4.154 24 C -0.152 4.152 25 C -0.153 4.153 26 C -0.153 4.153 27 C 0.322 3.678 28 O -0.476 6.476 29 H 0.112 0.888 30 H 0.153 0.847 31 H 0.076 0.924 32 H 0.309 0.691 33 H 0.136 0.864 34 H 0.183 0.817 35 H 0.248 0.752 36 H 0.044 0.956 37 H 0.062 0.938 38 H 0.201 0.799 39 H 0.055 0.945 40 H 0.104 0.896 41 H 0.083 0.917 42 H 0.090 0.910 43 H 0.091 0.909 44 H 0.097 0.903 45 H 0.091 0.909 46 H 0.082 0.918 47 H 0.083 0.917 48 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 8.208 20.378 8.154 23.434 hybrid contribution -1.675 -1.679 -0.162 2.377 sum 6.533 18.699 7.992 21.359 Atomic orbital electron populations 1.22151 0.72034 1.05609 1.04983 1.46085 1.10115 1.05955 1.66576 1.27158 0.84447 0.96021 0.94451 1.76895 1.20315 0.89833 1.25544 1.48267 1.05048 1.04230 1.68605 1.21340 0.86680 0.95974 0.94166 1.21268 0.80068 0.78113 0.92060 1.90682 1.53646 1.54091 1.47372 1.45592 1.29478 1.49717 1.09577 1.21110 0.96305 0.94798 0.83223 0.92227 1.21222 0.87972 0.91370 0.97942 1.42574 1.09951 1.06210 1.79917 1.19704 0.96173 0.86065 1.35575 0.90030 1.25692 0.96029 1.02567 1.02958 1.69935 1.02469 1.36293 1.53310 0.85033 0.77843 0.79935 0.76696 1.18235 1.22095 1.22509 1.22061 0.92577 0.95350 1.01031 1.22417 0.96783 0.98327 0.97900 1.22453 0.97131 0.93589 1.01997 1.22295 0.96749 0.98879 0.97359 1.22097 0.99296 0.94575 0.99296 1.17239 0.83276 0.85507 0.81784 1.91138 1.78504 1.17880 1.60092 0.88841 0.84749 0.92399 0.69096 0.86370 0.81724 0.75166 0.95611 0.93814 0.79950 0.94500 0.89593 0.91666 0.90970 0.90873 0.90318 0.90944 0.91789 0.91660 0.94270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.49 11.05 127.77 1.41 2.90 16 2 N -0.56 -14.01 3.14 -683.69 -2.15 -16.16 16 3 C 0.28 4.85 12.66 179.82 2.28 7.13 16 4 N -0.30 -7.89 12.53 -59.42 -0.74 -8.63 16 5 N -0.44 -14.83 3.11 -481.78 -1.50 -16.33 16 6 C 0.14 4.38 6.87 85.63 0.59 4.97 16 7 C 0.50 18.73 7.07 87.66 0.62 19.35 16 8 O -0.58 -27.55 15.75 -3.03 -0.05 -27.60 16 9 N -0.69 -22.50 3.67 -442.51 -1.62 -24.12 16 10 C 0.15 5.25 2.03 45.00 0.09 5.34 16 11 H 0.06 2.56 6.91 -2.39 -0.02 2.54 16 12 C 0.14 5.81 5.85 86.38 0.51 6.32 16 13 N -0.74 -40.71 5.43 -343.46 -1.87 -42.58 16 14 C -0.24 -14.37 9.99 84.03 0.84 -13.53 16 15 H 0.08 4.52 7.83 -2.91 -0.02 4.50 16 16 C -0.08 -4.97 5.50 84.86 0.47 -4.50 16 17 N -0.97 -65.96 13.06 21.65 0.28 -65.67 16 18 Si 0.98 49.16 29.55 68.60 2.03 51.19 16 19 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 20 H -0.29 -14.74 7.11 99.48 0.71 -14.03 16 21 H -0.30 -15.12 7.11 99.48 0.71 -14.41 16 22 C -0.09 -2.26 2.80 -10.07 -0.03 -2.29 16 23 C -0.12 -2.34 5.18 31.67 0.16 -2.17 16 24 C -0.11 -1.79 6.91 31.88 0.22 -1.57 16 25 C -0.12 -2.03 6.83 31.67 0.22 -1.81 16 26 C -0.11 -2.69 6.21 31.32 0.19 -2.49 16 27 C 0.62 23.92 8.60 178.99 1.54 25.46 16 28 O -0.60 -30.11 17.71 -4.72 -0.08 -30.20 16 29 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.13 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.06 1.33 8.08 -2.39 -0.02 1.31 16 32 H 0.29 0.64 8.06 -2.91 -0.02 0.62 16 33 H 0.12 3.72 8.11 -2.39 -0.02 3.70 16 34 H 0.17 3.30 8.14 -2.38 -0.02 3.28 16 35 H 0.41 11.12 7.15 -92.71 -0.66 10.45 16 36 H 0.03 1.07 8.14 -2.39 -0.02 1.06 16 37 H 0.04 1.64 7.24 -2.39 -0.02 1.63 16 38 H 0.37 22.73 7.31 -92.71 -0.68 22.05 16 39 H 0.25 16.40 8.31 -92.71 -0.77 15.63 16 40 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 41 H 0.06 1.33 6.04 -2.39 -0.01 1.32 16 42 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 45 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 46 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 47 H 0.06 1.42 8.14 -2.39 -0.02 1.41 16 48 H 0.04 1.15 6.71 -2.39 -0.02 1.14 16 Total: -1.00 -99.48 394.14 3.05 -96.43 By element: Atomic # 1 Polarization: 40.91 SS G_CDS: -0.35 Total: 40.55 kcal Atomic # 6 Polarization: 34.00 SS G_CDS: 9.11 Total: 43.11 kcal Atomic # 7 Polarization: -165.90 SS G_CDS: -7.60 Total: -173.49 kcal Atomic # 8 Polarization: -57.66 SS G_CDS: -0.13 Total: -57.79 kcal Atomic # 14 Polarization: 49.16 SS G_CDS: 2.03 Total: 51.19 kcal Total: -99.48 3.05 -96.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270415328.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.027 kcal (2) G-P(sol) polarization free energy of solvation -99.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds