Wall clock time and date at job start Tue Mar 31 2020 20:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34943 * 126.55038 * 2 1 4 4 O 1.35210 * 125.48596 * 359.97438 * 3 2 1 5 5 N 1.31530 * 109.01843 * 180.27383 * 3 2 1 6 6 C 1.33221 * 109.76033 * 359.72478 * 5 3 2 7 7 C 1.36715 * 107.96332 * 0.02562 * 6 5 3 8 8 C 1.46381 * 126.82606 * 179.97438 * 7 6 5 9 9 O 1.21731 * 120.00283 * 184.93311 * 8 7 6 10 10 N 1.34780 * 120.00023 * 4.94010 * 8 7 6 11 11 C 1.46501 * 120.00334 * 174.58504 * 10 8 7 12 12 C 1.52994 * 109.47287 * 179.97438 * 11 10 8 13 13 N 1.46902 * 109.47289 * 180.02562 * 12 11 10 14 14 C 1.46846 * 111.00090 * 45.78774 * 13 12 11 15 15 C 1.53032 * 109.52499 * 185.84537 * 14 13 12 16 16 C 1.53119 * 109.27667 * 300.82122 * 15 14 13 17 17 N 1.46500 * 109.57787 * 177.59067 * 16 15 14 18 18 C 1.36941 * 119.99795 * 85.28205 * 17 16 15 19 19 H 1.07992 * 119.99961 * 0.02562 * 18 17 16 20 20 C 1.38819 * 119.99761 * 180.02562 * 18 17 16 21 21 N 1.31611 * 119.99961 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 119.99986 * 0.02562 * 20 18 17 23 23 H 1.48494 * 109.47158 * 90.00030 * 22 20 18 24 24 H 1.48500 * 109.47177 * 210.00043 * 22 20 18 25 25 H 1.48503 * 109.47352 * 329.99881 * 22 20 18 26 26 C 1.53124 * 109.16243 * 57.65423 * 16 15 14 27 27 C 1.46845 * 111.00246 * 170.00018 * 13 12 11 28 28 H 1.09003 * 109.47054 * 272.54904 * 1 2 3 29 29 H 1.08997 * 109.47057 * 32.54639 * 1 2 3 30 30 H 1.09000 * 109.47157 * 152.54750 * 1 2 3 31 31 H 0.96693 * 114.00090 * 270.34100 * 4 3 2 32 32 H 1.08005 * 126.01762 * 179.97438 * 6 5 3 33 33 H 0.97004 * 120.00028 * 354.58665 * 10 8 7 34 34 H 1.08998 * 109.46749 * 59.99314 * 11 10 8 35 35 H 1.09000 * 109.46914 * 300.00328 * 11 10 8 36 36 H 1.09000 * 109.47523 * 300.00092 * 12 11 10 37 37 H 1.08999 * 109.47215 * 59.99747 * 12 11 10 38 38 H 1.09005 * 109.45822 * 305.85983 * 14 13 12 39 39 H 1.08990 * 109.45999 * 65.82657 * 14 13 12 40 40 H 1.08994 * 109.50735 * 180.87793 * 15 14 13 41 41 H 1.08999 * 109.50594 * 60.75912 * 15 14 13 42 42 H 1.09000 * 109.52446 * 297.74988 * 16 15 14 43 43 H 0.96997 * 120.00196 * 265.28549 * 17 16 15 44 44 H 0.97002 * 120.00293 * 180.02562 * 21 20 18 45 45 H 1.09000 * 109.50124 * 182.40865 * 26 16 15 46 46 H 1.08994 * 109.50476 * 62.28656 * 26 16 15 47 47 H 1.08994 * 109.45989 * 294.17363 * 27 13 12 48 48 H 1.09004 * 109.46066 * 54.15422 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2687 1.0840 0.0000 4 8 1.8517 2.3702 -0.0005 5 7 3.5229 0.6878 -0.0059 6 6 3.5747 -0.6434 -0.0039 7 6 2.2916 -1.1153 0.0031 8 6 1.8726 -2.5178 0.0070 9 8 0.6915 -2.8005 -0.0774 10 7 2.7944 -3.4963 0.1042 11 6 2.3699 -4.8930 0.2277 12 6 3.6027 -5.7944 0.3199 13 7 3.1771 -7.1950 0.4431 14 6 2.1181 -7.5103 -0.5241 15 6 1.5995 -8.9276 -0.2710 16 6 2.7560 -9.9214 -0.4101 17 7 2.2792 -11.2743 -0.1127 18 6 1.6963 -12.0267 -1.0972 19 1 1.5884 -11.6229 -2.0930 20 6 1.2440 -13.3085 -0.8152 21 7 0.6842 -14.0319 -1.7616 22 14 1.4300 -14.0067 0.9074 23 1 0.2255 -13.6733 1.7093 24 1 1.5803 -15.4820 0.8300 25 1 2.6320 -13.4198 1.5523 26 6 3.8659 -9.5421 0.5742 27 6 4.3187 -8.1069 0.2965 28 1 -0.3633 0.0457 1.0267 29 1 -0.3633 0.8663 -0.5529 30 1 -0.3633 -0.9119 -0.4738 31 1 1.7257 2.7425 -0.8839 32 1 4.4723 -1.2440 -0.0080 33 1 3.7389 -3.2757 0.0924 34 1 1.7806 -5.1721 -0.6457 35 1 1.7651 -5.0108 1.1268 36 1 4.2072 -5.6766 -0.5794 37 1 4.1923 -5.5153 1.1931 38 1 1.3000 -6.7987 -0.4117 39 1 2.5191 -7.4455 -1.5355 40 1 0.8244 -9.1670 -0.9989 41 1 1.1858 -8.9894 0.7356 42 1 3.1448 -9.8878 -1.4279 43 1 2.3764 -11.6371 0.7816 44 1 0.3678 -14.9274 -1.5645 45 1 4.7100 -10.2204 0.4500 46 1 3.4879 -9.6135 1.5940 47 1 4.7093 -8.0393 -0.7188 48 1 5.0989 -7.8288 1.0051 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271919422.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:58:56 Heat of formation + Delta-G solvation = 17.055491 kcal Electronic energy + Delta-G solvation = -28504.704892 eV Core-core repulsion = 24403.972012 eV Total energy + Delta-G solvation = -4100.732880 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.77203 -39.91691 -38.94789 -37.88242 -36.05386 -34.89718 -34.32739 -32.39212 -30.95266 -30.47982 -29.79503 -27.77854 -27.55463 -24.68126 -23.51859 -23.25812 -22.27074 -21.78804 -21.07554 -20.63373 -19.52102 -19.19234 -17.99191 -17.53052 -17.01497 -16.76072 -16.17404 -15.83369 -15.46827 -15.02218 -14.94602 -14.62885 -14.55958 -14.36446 -14.02536 -13.97434 -13.43369 -13.25770 -13.24566 -13.11614 -13.09279 -12.74026 -12.50327 -12.02810 -11.79759 -11.64623 -11.51297 -10.95591 -10.87332 -10.84394 -10.62439 -10.39249 -10.33117 -10.28788 -10.15084 -9.78218 -9.57016 -9.53166 -9.00332 -8.87834 -8.32720 -7.24565 -5.75715 -3.10843 0.65714 1.62559 2.08220 2.73561 2.84866 3.23416 3.39172 3.42581 3.46909 3.91517 4.13332 4.23587 4.45488 4.54024 4.60733 4.68598 4.75991 4.79583 5.05082 5.05692 5.15100 5.20743 5.33258 5.41884 5.46869 5.55336 5.56089 5.65106 5.68478 5.77809 5.79826 5.89352 5.94542 5.96491 6.04531 6.16967 6.22415 6.38706 6.56066 6.77366 6.89881 6.95813 7.00319 7.11929 7.16901 7.23575 7.70483 8.00963 8.43637 9.22634 9.95433 10.15769 11.42696 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.030450 B = 0.001722 C = 0.001667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.307959 B =16255.741990 C =16788.722064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.427 5.427 3 C 0.397 3.603 4 O -0.439 6.439 5 N -0.487 5.487 6 C 0.056 3.944 7 C -0.078 4.078 8 C 0.597 3.403 9 O -0.539 6.539 10 N -0.714 5.714 11 C 0.117 3.883 12 C 0.045 3.955 13 N -0.532 5.532 14 C 0.049 3.951 15 C -0.132 4.132 16 C 0.182 3.818 17 N -0.748 5.748 18 C -0.242 4.242 19 H 0.089 0.911 20 C 0.003 3.997 21 N -0.935 5.935 22 Si 0.885 3.115 23 H -0.284 1.284 24 H -0.292 1.292 25 H -0.277 1.277 26 C -0.125 4.125 27 C 0.064 3.936 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.111 0.889 31 H 0.405 0.595 32 H 0.187 0.813 33 H 0.403 0.597 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.040 0.960 37 H 0.081 0.919 38 H 0.075 0.925 39 H 0.032 0.968 40 H 0.069 0.931 41 H 0.064 0.936 42 H 0.050 0.950 43 H 0.361 0.639 44 H 0.259 0.741 45 H 0.068 0.932 46 H 0.067 0.933 47 H 0.034 0.966 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.044 31.823 3.536 32.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.119 5.119 3 C 0.098 3.902 4 O -0.240 6.240 5 N -0.215 5.215 6 C -0.099 4.099 7 C -0.195 4.195 8 C 0.383 3.617 9 O -0.417 6.417 10 N -0.366 5.366 11 C -0.006 4.006 12 C -0.084 4.084 13 N -0.258 5.258 14 C -0.079 4.079 15 C -0.173 4.173 16 C 0.072 3.928 17 N -0.390 5.390 18 C -0.372 4.372 19 H 0.107 0.893 20 C -0.192 4.192 21 N -0.583 5.583 22 Si 0.716 3.284 23 H -0.211 1.211 24 H -0.218 1.218 25 H -0.203 1.203 26 C -0.163 4.163 27 C -0.064 4.064 28 H 0.102 0.898 29 H 0.105 0.895 30 H 0.129 0.871 31 H 0.263 0.737 32 H 0.204 0.796 33 H 0.237 0.763 34 H 0.097 0.903 35 H 0.100 0.900 36 H 0.058 0.942 37 H 0.099 0.901 38 H 0.093 0.907 39 H 0.050 0.950 40 H 0.088 0.912 41 H 0.082 0.918 42 H 0.068 0.932 43 H 0.194 0.806 44 H 0.069 0.931 45 H 0.086 0.914 46 H 0.086 0.914 47 H 0.052 0.948 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.344 32.021 4.329 32.751 hybrid contribution -0.018 -0.651 -0.092 0.658 sum 5.326 31.370 4.236 32.100 Atomic orbital electron populations 1.22344 0.74880 1.05926 1.04646 1.45678 1.08608 1.05545 1.52097 1.20254 0.84453 0.81453 1.04060 1.84837 1.86942 1.17855 1.34349 1.70319 1.16476 1.12761 1.21974 1.22560 0.95415 0.90317 1.01645 1.20547 0.91142 0.88318 1.19481 1.16543 0.85607 0.82901 0.76667 1.90838 1.16890 1.83829 1.50193 1.45519 1.09584 1.06708 1.74789 1.21626 0.97340 0.78052 1.03607 1.22224 0.95844 0.89099 1.01216 1.61999 1.10907 1.00929 1.51962 1.22321 0.93979 0.98895 0.92742 1.22274 1.00286 0.92294 1.02432 1.20216 0.91244 0.84839 0.96484 1.42777 1.73088 1.12692 1.10474 1.19078 1.30516 0.95473 0.92149 0.89315 1.24674 1.00711 0.96768 0.97082 1.69700 1.45836 1.10992 1.31759 0.86535 0.77887 0.78352 0.85667 1.21112 1.21843 1.20308 1.21900 0.99484 0.94030 1.00925 1.22040 0.91832 0.92931 0.99575 0.89843 0.89488 0.87064 0.73687 0.79642 0.76255 0.90324 0.90025 0.94206 0.90077 0.90684 0.94970 0.91193 0.91755 0.93198 0.80630 0.93111 0.91364 0.91402 0.94751 0.91066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.39 10.75 59.85 0.64 1.03 16 2 N -0.43 -3.54 3.20 -122.12 -0.39 -3.94 16 3 C 0.40 3.37 9.01 -89.60 -0.81 2.56 16 4 O -0.44 -2.61 13.53 -17.33 -0.23 -2.84 16 5 N -0.49 -4.69 11.22 -14.62 -0.16 -4.86 16 6 C 0.06 0.43 11.35 -17.50 -0.20 0.23 16 7 C -0.08 -0.69 6.92 -81.98 -0.57 -1.25 16 8 C 0.60 5.81 7.77 -12.98 -0.10 5.71 16 9 O -0.54 -6.98 14.84 5.16 0.08 -6.90 16 10 N -0.71 -5.25 5.54 -61.71 -0.34 -5.59 16 11 C 0.12 1.04 4.93 -4.04 -0.02 1.02 16 12 C 0.04 0.38 5.39 -3.83 -0.02 0.36 16 13 N -0.53 -6.25 4.81 -234.68 -1.13 -7.38 16 14 C 0.05 0.65 4.85 -3.84 -0.02 0.63 16 15 C -0.13 -2.26 5.68 -26.65 -0.15 -2.41 16 16 C 0.18 3.40 2.84 -67.80 -0.19 3.21 16 17 N -0.75 -17.52 4.93 -53.30 -0.26 -17.79 16 18 C -0.24 -6.79 10.42 -15.05 -0.16 -6.94 16 19 H 0.09 2.66 8.06 -52.49 -0.42 2.24 16 20 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16 21 N -0.93 -29.37 13.97 55.49 0.78 -28.59 16 22 Si 0.89 22.16 27.74 -169.99 -4.71 17.45 16 23 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 24 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 25 H -0.28 -6.51 6.52 56.52 0.37 -6.14 16 26 C -0.12 -1.88 5.57 -26.65 -0.15 -2.03 16 27 C 0.06 0.77 5.42 -3.83 -0.02 0.75 16 28 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.11 0.84 6.30 -51.93 -0.33 0.52 16 31 H 0.41 0.25 9.06 45.56 0.41 0.66 16 32 H 0.19 0.73 7.45 -52.48 -0.39 0.34 16 33 H 0.40 1.73 7.40 -40.82 -0.30 1.43 16 34 H 0.08 0.81 6.21 -51.93 -0.32 0.49 16 35 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.04 0.31 8.08 -51.93 -0.42 -0.11 16 37 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.93 5.81 -51.93 -0.30 0.63 16 39 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 41 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 43 H 0.36 8.36 5.66 -40.82 -0.23 8.13 16 44 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 45 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 46 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 47 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.07 0.72 8.12 -51.93 -0.42 0.30 16 LS Contribution 386.85 15.07 5.83 5.83 Total: -1.00 -36.72 386.85 -8.95 -45.68 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: -6.54 Total: 6.07 kcal Atomic # 6 Polarization: 4.72 SS G_CDS: -1.86 Total: 2.86 kcal Atomic # 7 Polarization: -66.63 SS G_CDS: -1.51 Total: -68.14 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: -0.16 Total: -9.75 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.71 Total: 17.45 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -36.72 -8.95 -45.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271919422.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.733 kcal (2) G-P(sol) polarization free energy of solvation -36.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds