Wall clock time and date at job start Tue Mar 31 2020 20:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34943 * 126.55038 * 2 1 4 4 O 1.35210 * 125.48596 * 359.97438 * 3 2 1 5 5 N 1.31530 * 109.01843 * 180.27383 * 3 2 1 6 6 C 1.33221 * 109.76033 * 359.72478 * 5 3 2 7 7 C 1.36715 * 107.96332 * 0.02562 * 6 5 3 8 8 C 1.46381 * 126.82606 * 179.97438 * 7 6 5 9 9 O 1.21731 * 120.00283 * 184.93311 * 8 7 6 10 10 N 1.34780 * 120.00023 * 4.94010 * 8 7 6 11 11 C 1.46501 * 120.00334 * 174.58504 * 10 8 7 12 12 C 1.52994 * 109.47287 * 179.97438 * 11 10 8 13 13 N 1.46902 * 109.47289 * 180.02562 * 12 11 10 14 14 C 1.46846 * 111.00090 * 45.78774 * 13 12 11 15 15 C 1.53032 * 109.52499 * 185.84537 * 14 13 12 16 16 C 1.53119 * 109.27667 * 300.82122 * 15 14 13 17 17 N 1.46500 * 109.57787 * 177.59067 * 16 15 14 18 18 C 1.36941 * 119.99795 * 85.28205 * 17 16 15 19 19 H 1.07992 * 119.99961 * 0.02562 * 18 17 16 20 20 C 1.38819 * 119.99761 * 180.02562 * 18 17 16 21 21 N 1.31611 * 119.99961 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 119.99986 * 0.02562 * 20 18 17 23 23 H 1.48494 * 109.47158 * 90.00030 * 22 20 18 24 24 H 1.48500 * 109.47177 * 210.00043 * 22 20 18 25 25 H 1.48503 * 109.47352 * 329.99881 * 22 20 18 26 26 C 1.53124 * 109.16243 * 57.65423 * 16 15 14 27 27 C 1.46845 * 111.00246 * 170.00018 * 13 12 11 28 28 H 1.09003 * 109.47054 * 272.54904 * 1 2 3 29 29 H 1.08997 * 109.47057 * 32.54639 * 1 2 3 30 30 H 1.09000 * 109.47157 * 152.54750 * 1 2 3 31 31 H 0.96693 * 114.00090 * 270.34100 * 4 3 2 32 32 H 1.08005 * 126.01762 * 179.97438 * 6 5 3 33 33 H 0.97004 * 120.00028 * 354.58665 * 10 8 7 34 34 H 1.08998 * 109.46749 * 59.99314 * 11 10 8 35 35 H 1.09000 * 109.46914 * 300.00328 * 11 10 8 36 36 H 1.09000 * 109.47523 * 300.00092 * 12 11 10 37 37 H 1.08999 * 109.47215 * 59.99747 * 12 11 10 38 38 H 1.09005 * 109.45822 * 305.85983 * 14 13 12 39 39 H 1.08990 * 109.45999 * 65.82657 * 14 13 12 40 40 H 1.08994 * 109.50735 * 180.87793 * 15 14 13 41 41 H 1.08999 * 109.50594 * 60.75912 * 15 14 13 42 42 H 1.09000 * 109.52446 * 297.74988 * 16 15 14 43 43 H 0.96997 * 120.00196 * 265.28549 * 17 16 15 44 44 H 0.97002 * 120.00293 * 180.02562 * 21 20 18 45 45 H 1.09000 * 109.50124 * 182.40865 * 26 16 15 46 46 H 1.08994 * 109.50476 * 62.28656 * 26 16 15 47 47 H 1.08994 * 109.45989 * 294.17363 * 27 13 12 48 48 H 1.09004 * 109.46066 * 54.15422 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2687 1.0840 0.0000 4 8 1.8517 2.3702 -0.0005 5 7 3.5229 0.6878 -0.0059 6 6 3.5747 -0.6434 -0.0039 7 6 2.2916 -1.1153 0.0031 8 6 1.8726 -2.5178 0.0070 9 8 0.6915 -2.8005 -0.0774 10 7 2.7944 -3.4963 0.1042 11 6 2.3699 -4.8930 0.2277 12 6 3.6027 -5.7944 0.3199 13 7 3.1771 -7.1950 0.4431 14 6 2.1181 -7.5103 -0.5241 15 6 1.5995 -8.9276 -0.2710 16 6 2.7560 -9.9214 -0.4101 17 7 2.2792 -11.2743 -0.1127 18 6 1.6963 -12.0267 -1.0972 19 1 1.5884 -11.6229 -2.0930 20 6 1.2440 -13.3085 -0.8152 21 7 0.6842 -14.0319 -1.7616 22 14 1.4300 -14.0067 0.9074 23 1 0.2255 -13.6733 1.7093 24 1 1.5803 -15.4820 0.8300 25 1 2.6320 -13.4198 1.5523 26 6 3.8659 -9.5421 0.5742 27 6 4.3187 -8.1069 0.2965 28 1 -0.3633 0.0457 1.0267 29 1 -0.3633 0.8663 -0.5529 30 1 -0.3633 -0.9119 -0.4738 31 1 1.7257 2.7425 -0.8839 32 1 4.4723 -1.2440 -0.0080 33 1 3.7389 -3.2757 0.0924 34 1 1.7806 -5.1721 -0.6457 35 1 1.7651 -5.0108 1.1268 36 1 4.2072 -5.6766 -0.5794 37 1 4.1923 -5.5153 1.1931 38 1 1.3000 -6.7987 -0.4117 39 1 2.5191 -7.4455 -1.5355 40 1 0.8244 -9.1670 -0.9989 41 1 1.1858 -8.9894 0.7356 42 1 3.1448 -9.8878 -1.4279 43 1 2.3764 -11.6371 0.7816 44 1 0.3678 -14.9274 -1.5645 45 1 4.7100 -10.2204 0.4500 46 1 3.4879 -9.6135 1.5940 47 1 4.7093 -8.0393 -0.7188 48 1 5.0989 -7.8288 1.0051 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271919422.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:58:54 Heat of formation + Delta-G solvation = -15.876820 kcal Electronic energy + Delta-G solvation = -28506.132944 eV Core-core repulsion = 24403.972012 eV Total energy + Delta-G solvation = -4102.160932 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.34894 -40.70082 -39.99610 -38.36366 -37.24333 -35.96563 -35.06553 -34.08231 -32.28839 -31.73200 -30.81914 -28.69830 -28.10928 -26.05032 -24.63288 -24.30524 -23.23184 -22.67509 -22.12614 -21.35799 -20.89371 -19.71054 -19.50392 -18.59620 -17.67791 -17.50615 -16.96813 -16.67678 -16.57195 -16.22808 -15.82549 -15.64532 -15.61900 -15.28607 -15.08204 -14.86942 -14.70521 -14.53209 -14.35780 -14.11898 -13.75649 -13.71635 -13.38948 -13.21216 -13.05374 -12.92376 -12.69676 -12.49684 -12.26612 -12.04704 -11.85447 -11.78814 -11.63358 -11.48751 -11.18658 -11.06858 -10.93048 -10.87548 -10.25268 -9.58110 -9.30245 -9.21790 -8.01489 -5.34242 0.06133 1.08100 1.38598 1.42142 1.49409 1.49573 2.08827 2.18824 2.49612 2.78620 3.04261 3.29847 3.55916 3.57765 3.75972 3.80354 3.90155 4.01460 4.09008 4.20032 4.23834 4.29492 4.31340 4.37823 4.53323 4.56833 4.59176 4.70077 4.76826 4.84817 4.91831 4.96003 4.98575 5.01746 5.12881 5.17864 5.28599 5.34657 5.42373 5.50589 5.56682 5.77692 6.11351 6.17972 6.23242 6.37075 6.53753 6.67586 7.06284 7.09479 7.86741 8.06030 9.20206 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.030450 B = 0.001722 C = 0.001667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.307959 B =16255.741990 C =16788.722064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.433 5.433 3 C 0.400 3.600 4 O -0.443 6.443 5 N -0.518 5.518 6 C 0.068 3.932 7 C -0.101 4.101 8 C 0.596 3.404 9 O -0.580 6.580 10 N -0.697 5.697 11 C 0.123 3.877 12 C 0.052 3.948 13 N -0.541 5.541 14 C 0.060 3.940 15 C -0.125 4.125 16 C 0.173 3.827 17 N -0.752 5.752 18 C -0.228 4.228 19 H 0.053 0.947 20 C -0.067 4.067 21 N -0.986 5.986 22 Si 0.957 3.043 23 H -0.281 1.281 24 H -0.297 1.297 25 H -0.249 1.249 26 C -0.117 4.117 27 C 0.070 3.930 28 H 0.084 0.916 29 H 0.115 0.885 30 H 0.094 0.906 31 H 0.428 0.572 32 H 0.220 0.780 33 H 0.420 0.580 34 H 0.062 0.938 35 H 0.067 0.933 36 H 0.057 0.943 37 H 0.106 0.894 38 H 0.083 0.917 39 H 0.033 0.967 40 H 0.039 0.961 41 H 0.057 0.943 42 H 0.034 0.966 43 H 0.365 0.635 44 H 0.257 0.743 45 H 0.070 0.930 46 H 0.068 0.932 47 H 0.039 0.961 48 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.371 34.064 5.417 35.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.126 5.126 3 C 0.100 3.900 4 O -0.248 6.248 5 N -0.247 5.247 6 C -0.087 4.087 7 C -0.217 4.217 8 C 0.383 3.617 9 O -0.461 6.461 10 N -0.350 5.350 11 C -0.001 4.001 12 C -0.076 4.076 13 N -0.267 5.267 14 C -0.068 4.068 15 C -0.166 4.166 16 C 0.065 3.935 17 N -0.395 5.395 18 C -0.359 4.359 19 H 0.071 0.929 20 C -0.258 4.258 21 N -0.637 5.637 22 Si 0.784 3.216 23 H -0.208 1.208 24 H -0.223 1.223 25 H -0.174 1.174 26 C -0.155 4.155 27 C -0.058 4.058 28 H 0.102 0.898 29 H 0.133 0.867 30 H 0.112 0.888 31 H 0.290 0.710 32 H 0.237 0.763 33 H 0.258 0.742 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.075 0.925 37 H 0.124 0.876 38 H 0.101 0.899 39 H 0.051 0.949 40 H 0.058 0.942 41 H 0.076 0.924 42 H 0.052 0.948 43 H 0.198 0.802 44 H 0.066 0.934 45 H 0.089 0.911 46 H 0.086 0.914 47 H 0.057 0.943 48 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 7.732 34.340 6.213 35.744 hybrid contribution -0.751 -1.193 -0.769 1.606 sum 6.981 33.147 5.444 34.309 Atomic orbital electron populations 1.22417 0.74087 1.06338 1.04979 1.45830 1.09233 1.05519 1.51985 1.20402 0.84433 0.82129 1.03002 1.84792 1.86737 1.16749 1.36480 1.70353 1.17172 1.13738 1.23418 1.23134 0.96076 0.89942 0.99563 1.20529 0.91819 0.87955 1.21361 1.16735 0.85257 0.83627 0.76038 1.90822 1.18591 1.84426 1.52256 1.45310 1.10258 1.05693 1.73712 1.21436 0.97520 0.78943 1.02170 1.22252 0.95591 0.86554 1.03203 1.61942 1.10675 1.02834 1.51208 1.22110 0.95110 0.96254 0.93333 1.22087 0.98886 0.94587 1.01020 1.20490 0.93026 0.82958 0.97020 1.42812 1.72900 1.14202 1.09559 1.19026 1.29400 0.95705 0.91762 0.92882 1.25518 1.01264 0.97376 1.01666 1.69888 1.47949 1.11414 1.34409 0.85374 0.78861 0.77042 0.80286 1.20776 1.22339 1.17368 1.21805 0.97796 0.96523 0.99405 1.22019 0.92256 0.90726 1.00809 0.89774 0.86692 0.88787 0.71015 0.76346 0.74178 0.91979 0.91484 0.92475 0.87595 0.89865 0.94867 0.94222 0.92413 0.94769 0.80188 0.93449 0.91126 0.91369 0.94292 0.87898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.74 10.75 127.77 1.37 2.11 16 2 N -0.43 -6.75 3.20 -651.99 -2.09 -8.84 16 3 C 0.40 6.18 9.01 179.99 1.62 7.80 16 4 O -0.44 -4.47 13.53 -84.91 -1.15 -5.62 16 5 N -0.52 -9.04 11.22 -313.66 -3.52 -12.56 16 6 C 0.07 0.89 11.35 84.13 0.96 1.84 16 7 C -0.10 -1.63 6.92 39.80 0.28 -1.36 16 8 C 0.60 11.05 7.77 86.36 0.67 11.72 16 9 O -0.58 -15.15 14.84 -4.45 -0.07 -15.21 16 10 N -0.70 -8.70 5.54 -467.36 -2.59 -11.29 16 11 C 0.12 1.96 4.93 86.38 0.43 2.38 16 12 C 0.05 0.68 5.39 86.30 0.46 1.14 16 13 N -0.54 -11.11 4.81 -896.40 -4.31 -15.42 16 14 C 0.06 1.54 4.85 86.32 0.42 1.96 16 15 C -0.13 -4.31 5.68 30.64 0.17 -4.14 16 16 C 0.17 6.44 2.84 45.07 0.13 6.56 16 17 N -0.75 -35.23 4.93 -322.55 -1.59 -36.82 16 18 C -0.23 -13.13 10.42 84.03 0.88 -12.26 16 19 H 0.05 3.37 8.06 -2.91 -0.02 3.35 16 20 C -0.07 -4.01 5.50 84.86 0.47 -3.54 16 21 N -0.99 -64.02 13.97 21.65 0.30 -63.72 16 22 Si 0.96 46.05 27.74 68.60 1.90 47.95 16 23 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 24 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 25 H -0.25 -10.72 6.52 99.48 0.65 -10.08 16 26 C -0.12 -3.25 5.57 30.65 0.17 -3.08 16 27 C 0.07 1.41 5.42 86.33 0.47 1.88 16 28 H 0.08 0.94 8.14 -2.39 -0.02 0.93 16 29 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.09 1.47 6.30 -2.39 -0.02 1.45 16 31 H 0.43 -0.35 9.06 -74.06 -0.67 -1.02 16 32 H 0.22 0.94 7.45 -2.91 -0.02 0.92 16 33 H 0.42 2.17 7.40 -92.70 -0.69 1.48 16 34 H 0.06 1.22 6.21 -2.39 -0.01 1.20 16 35 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.06 0.61 8.08 -2.39 -0.02 0.59 16 37 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.08 2.01 5.81 -2.38 -0.01 2.00 16 39 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 42 H 0.03 1.37 8.08 -2.39 -0.02 1.35 16 43 H 0.36 16.41 5.66 -92.71 -0.52 15.89 16 44 H 0.26 15.89 8.31 -92.71 -0.77 15.12 16 45 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 46 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 47 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 48 H 0.10 1.53 8.12 -2.38 -0.02 1.51 16 Total: -1.00 -82.84 386.85 -5.55 -88.39 By element: Atomic # 1 Polarization: 21.06 SS G_CDS: -0.93 Total: 20.12 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: 8.49 Total: 13.01 kcal Atomic # 7 Polarization: -134.85 SS G_CDS: -13.79 Total: -148.65 kcal Atomic # 8 Polarization: -19.62 SS G_CDS: -1.22 Total: -20.83 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 1.90 Total: 47.95 kcal Total: -82.84 -5.55 -88.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271919422.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.513 kcal (2) G-P(sol) polarization free energy of solvation -82.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds