Wall clock time and date at job start Tue Mar 31 2020 20:22:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46501 * 109.47027 * 2 1 4 4 C 1.46495 * 119.99903 * 81.91457 * 3 2 1 5 5 C 1.52994 * 109.47437 * 90.00204 * 4 3 2 6 6 N 1.46904 * 109.47132 * 179.97438 * 5 4 3 7 7 C 1.46898 * 110.99891 * 179.97438 * 6 5 4 8 8 C 1.50705 * 109.47023 * 179.97438 * 7 6 5 9 9 O 1.21286 * 120.00066 * 0.02562 * 8 7 6 10 10 N 1.34774 * 119.99900 * 180.02562 * 8 7 6 11 11 C 1.37100 * 119.99942 * 180.02562 * 10 8 7 12 12 H 1.07992 * 119.99728 * 359.97438 * 11 10 8 13 13 C 1.38954 * 119.99673 * 179.97438 * 11 10 8 14 14 N 1.31407 * 120.00369 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99460 * 179.97438 * 13 11 10 16 16 H 1.48495 * 109.47363 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47048 * 119.99654 * 15 13 11 18 18 H 1.48501 * 109.46843 * 239.99753 * 15 13 11 19 19 C 1.34779 * 119.99754 * 261.90668 * 3 2 1 20 20 O 1.21281 * 119.99739 * 180.70269 * 19 3 2 21 21 C 1.50698 * 119.99936 * 0.71152 * 19 3 2 22 22 H 1.08998 * 109.47501 * 312.46186 * 21 19 3 23 23 C 1.53002 * 109.47363 * 72.46244 * 21 19 3 24 24 N 1.46500 * 109.47108 * 192.46106 * 21 19 3 25 25 C 1.34951 * 126.03764 * 274.99894 * 24 21 19 26 26 C 1.35316 * 107.74788 * 179.97438 * 25 24 21 27 27 C 1.39870 * 107.91971 * 0.02562 * 26 25 24 28 28 N 1.30843 * 108.19922 * 359.73665 * 27 26 25 29 29 H 1.08995 * 109.47256 * 50.84239 * 1 2 3 30 30 H 1.09000 * 109.46670 * 170.84216 * 1 2 3 31 31 H 1.09000 * 109.46689 * 290.83924 * 1 2 3 32 32 H 1.09001 * 109.47303 * 239.99749 * 2 1 3 33 33 H 1.09002 * 109.47360 * 119.99964 * 2 1 3 34 34 H 1.09004 * 109.46911 * 210.00088 * 4 3 2 35 35 H 1.08997 * 109.47221 * 329.99321 * 4 3 2 36 36 H 1.09001 * 109.46833 * 299.99098 * 5 4 3 37 37 H 1.08997 * 109.47636 * 59.99371 * 5 4 3 38 38 H 1.00896 * 110.99860 * 56.04232 * 6 5 4 39 39 H 1.09001 * 109.47411 * 300.00184 * 7 6 5 40 40 H 1.09003 * 109.47190 * 60.00364 * 7 6 5 41 41 H 0.97004 * 120.00044 * 359.97438 * 10 8 7 42 42 H 0.96995 * 120.00106 * 180.02562 * 14 13 11 43 43 H 1.09004 * 109.46915 * 43.91811 * 23 21 19 44 44 H 1.09001 * 109.47485 * 163.91637 * 23 21 19 45 45 H 1.08998 * 109.46956 * 283.91997 * 23 21 19 46 46 H 1.07999 * 126.12349 * 359.96255 * 25 24 21 47 47 H 1.07994 * 126.03793 * 180.02562 * 26 25 24 48 48 H 1.07995 * 125.90152 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.0942 2.1313 1.2561 5 6 3.4671 1.9165 1.8963 6 7 3.5434 2.6691 3.1555 7 6 4.8506 2.4857 3.8001 8 6 4.8915 3.2713 5.0855 9 8 3.9265 3.9198 5.4309 10 7 6.0004 3.2533 5.8513 11 6 6.0374 3.9676 7.0209 12 1 5.1782 4.5450 7.3284 13 6 7.1806 3.9486 7.8106 14 7 8.2259 3.2456 7.4367 15 14 7.2312 4.9224 9.4039 16 1 5.9369 5.6244 9.5964 17 1 7.4674 3.9979 10.5418 18 1 8.3299 5.9195 9.3399 19 6 2.3979 1.9618 -1.1556 20 8 2.8141 3.1009 -1.1538 21 6 2.3048 1.1955 -2.4499 22 1 2.7376 0.2039 -2.3171 23 6 0.8365 1.0605 -2.8583 24 7 3.0386 1.9124 -3.4957 25 6 2.5562 2.9156 -4.2587 26 6 3.5424 3.3056 -5.0991 27 6 4.6659 2.5132 -4.8413 28 7 4.3667 1.6814 -3.8767 29 1 -0.3633 0.6489 -0.7968 30 1 -0.3633 -1.0146 -0.1636 31 1 -0.3633 0.3656 0.9605 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.9493 3.1927 1.0547 35 1 1.3175 1.7812 1.9358 36 1 3.6119 0.8551 2.0977 37 1 4.2439 2.2666 1.2165 38 1 2.7936 2.4086 3.7784 39 1 5.0045 1.4282 4.0151 40 1 5.6372 2.8392 3.1335 41 1 6.7721 2.7344 5.5752 42 1 9.0237 3.2320 7.9882 43 1 0.3305 2.0154 -2.7156 44 1 0.7763 0.7706 -3.9074 45 1 0.3567 0.2996 -2.2429 46 1 1.5612 3.3323 -4.2077 47 1 3.4741 4.0900 -5.8383 48 1 5.6173 2.5795 -5.3480 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273275332.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:57 Heat of formation + Delta-G solvation = 24.791768 kcal Electronic energy + Delta-G solvation = -28759.918882 eV Core-core repulsion = 24659.521472 eV Total energy + Delta-G solvation = -4100.397410 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.62141 -40.24721 -38.28614 -36.77328 -35.66476 -34.71219 -33.81102 -31.55054 -31.17337 -30.34927 -29.86831 -29.13964 -26.38429 -25.03262 -24.01103 -23.80617 -22.42845 -21.29166 -21.03518 -19.42469 -19.07050 -17.90569 -17.86394 -17.66987 -16.50170 -16.22132 -15.64344 -15.59670 -14.99643 -14.92045 -14.59714 -14.48202 -14.20726 -14.06339 -13.84812 -13.68090 -13.43011 -13.34281 -13.15552 -13.09055 -12.97594 -12.71561 -12.34595 -12.24655 -12.08068 -11.95335 -11.54904 -11.53136 -11.49322 -11.14712 -10.99120 -10.89581 -10.33468 -10.32705 -10.21221 -9.58561 -9.50779 -9.12184 -8.78141 -8.45314 -8.07533 -7.94792 -6.40302 -3.81124 1.58854 2.03804 2.19146 2.64844 2.70353 3.17525 3.27912 3.35436 3.81775 3.92068 4.02704 4.13560 4.18711 4.37466 4.45414 4.53424 4.63025 4.73544 4.78848 4.86512 4.92999 4.98970 5.11753 5.17450 5.19384 5.24791 5.27014 5.27668 5.37949 5.42322 5.57704 5.70284 5.72867 5.82382 5.83034 5.91058 6.00533 6.15632 6.28381 6.43698 6.70366 6.95101 7.16686 7.49618 7.56850 7.63610 7.75860 8.07859 8.62571 9.19205 9.55654 10.06949 10.77578 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.016872 B = 0.001950 C = 0.001815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.172868 B =14352.950642 C =15420.171060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.096 3.904 3 N -0.605 5.605 4 C 0.119 3.881 5 C 0.047 3.953 6 N -0.665 5.665 7 C 0.053 3.947 8 C 0.442 3.558 9 O -0.583 6.583 10 N -0.564 5.564 11 C -0.298 4.298 12 H 0.104 0.896 13 C 0.021 3.979 14 N -0.902 5.902 15 Si 0.930 3.070 16 H -0.268 1.268 17 H -0.282 1.282 18 H -0.281 1.281 19 C 0.501 3.499 20 O -0.510 6.510 21 C 0.145 3.855 22 H 0.124 0.876 23 C -0.171 4.171 24 N -0.358 5.358 25 C 0.072 3.928 26 C -0.275 4.275 27 C 0.049 3.951 28 N -0.295 5.295 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.096 0.904 35 H 0.080 0.920 36 H 0.026 0.974 37 H 0.073 0.927 38 H 0.348 0.652 39 H 0.043 0.957 40 H 0.086 0.914 41 H 0.392 0.608 42 H 0.271 0.729 43 H 0.073 0.927 44 H 0.081 0.919 45 H 0.099 0.901 46 H 0.169 0.831 47 H 0.147 0.853 48 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.182 -11.170 -24.689 31.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.027 4.027 3 N -0.340 5.340 4 C -0.004 4.004 5 C -0.083 4.083 6 N -0.297 5.297 7 C -0.080 4.080 8 C 0.227 3.773 9 O -0.467 6.467 10 N -0.201 5.201 11 C -0.428 4.428 12 H 0.122 0.878 13 C -0.180 4.180 14 N -0.543 5.543 15 Si 0.757 3.243 16 H -0.192 1.192 17 H -0.208 1.208 18 H -0.207 1.207 19 C 0.286 3.714 20 O -0.384 6.384 21 C 0.038 3.962 22 H 0.142 0.858 23 C -0.229 4.229 24 N -0.141 5.141 25 C -0.073 4.073 26 C -0.305 4.305 27 C -0.137 4.137 28 N -0.115 5.115 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.084 0.916 32 H 0.099 0.901 33 H 0.103 0.897 34 H 0.114 0.886 35 H 0.098 0.902 36 H 0.044 0.956 37 H 0.092 0.908 38 H 0.167 0.833 39 H 0.061 0.939 40 H 0.104 0.896 41 H 0.226 0.774 42 H 0.081 0.919 43 H 0.092 0.908 44 H 0.100 0.900 45 H 0.117 0.883 46 H 0.186 0.814 47 H 0.165 0.835 48 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -14.893 -10.551 -23.803 29.995 hybrid contribution 0.380 -0.156 0.559 0.693 sum -14.513 -10.707 -23.244 29.421 Atomic orbital electron populations 1.22433 0.95317 1.02791 1.03416 1.21750 0.94939 0.82243 1.03812 1.47907 1.64692 1.14341 1.07031 1.21432 0.97041 0.98421 0.83494 1.22254 0.97966 0.95321 0.92798 1.59934 1.04493 1.59485 1.05832 1.21660 0.92263 0.98117 0.95939 1.19778 0.84816 0.86642 0.86065 1.90517 1.36111 1.46414 1.73668 1.41871 1.13782 1.43985 1.20425 1.19759 1.01025 1.25037 0.96969 0.87842 1.25277 0.95033 0.97795 0.99942 1.69620 1.04366 1.41003 1.39328 0.85790 0.78481 0.79113 0.80899 1.19206 1.20784 1.20724 1.20717 0.78104 0.87500 0.85098 1.90813 1.43715 1.17756 1.86092 1.21081 0.94016 0.96360 0.84718 0.85809 1.22443 0.91660 1.04660 1.04096 1.48235 1.09576 1.28349 1.27918 1.22403 1.00453 0.91271 0.93208 1.21478 0.93911 1.07462 1.07600 1.23891 0.99817 0.94448 0.95592 1.77365 0.92616 1.24960 1.16560 0.91473 0.91009 0.91642 0.90114 0.89706 0.88578 0.90170 0.95568 0.90808 0.83283 0.93869 0.89570 0.77447 0.91921 0.90775 0.89994 0.88298 0.81388 0.83486 0.79963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.68 9.27 37.16 0.34 -0.33 16 2 C 0.10 0.49 5.61 -4.04 -0.02 0.47 16 3 N -0.61 -5.48 2.48 -173.69 -0.43 -5.92 16 4 C 0.12 1.33 5.67 -4.05 -0.02 1.30 16 5 C 0.05 0.64 6.01 -3.82 -0.02 0.61 16 6 N -0.66 -11.27 6.13 -115.06 -0.70 -11.97 16 7 C 0.05 0.99 6.17 -4.97 -0.03 0.96 16 8 C 0.44 10.79 7.82 -10.98 -0.09 10.70 16 9 O -0.58 -16.23 15.78 5.55 0.09 -16.14 16 10 N -0.56 -14.71 5.29 -10.96 -0.06 -14.77 16 11 C -0.30 -8.50 9.68 -14.93 -0.14 -8.64 16 12 H 0.10 3.09 7.16 -52.49 -0.38 2.71 16 13 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 14 N -0.90 -25.00 13.05 55.50 0.72 -24.28 16 15 Si 0.93 21.39 29.55 -169.99 -5.02 16.37 16 16 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 17 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 18 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 19 C 0.50 5.64 6.93 -10.99 -0.08 5.57 16 20 O -0.51 -8.29 15.91 5.56 0.09 -8.20 16 21 C 0.14 1.20 2.89 -69.08 -0.20 1.00 16 22 H 0.12 0.85 6.71 -51.93 -0.35 0.50 16 23 C -0.17 -0.77 7.61 37.16 0.28 -0.48 16 24 N -0.36 -3.93 3.11 -55.99 -0.17 -4.10 16 25 C 0.07 0.70 10.42 -17.22 -0.18 0.52 16 26 C -0.28 -2.64 10.80 -40.01 -0.43 -3.07 16 27 C 0.05 0.52 12.03 -17.36 -0.21 0.31 16 28 N -0.29 -3.77 12.58 30.62 0.39 -3.39 16 29 H 0.07 0.25 5.72 -51.93 -0.30 -0.05 16 30 H 0.07 0.16 8.14 -51.93 -0.42 -0.27 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.08 0.28 5.54 -51.93 -0.29 -0.01 16 33 H 0.08 0.42 8.13 -51.93 -0.42 -0.01 16 34 H 0.10 1.33 7.43 -51.93 -0.39 0.94 16 35 H 0.08 0.73 8.07 -51.93 -0.42 0.31 16 36 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.35 5.75 8.43 -39.29 -0.33 5.42 16 39 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 41 H 0.39 9.80 7.90 -40.82 -0.32 9.48 16 42 H 0.27 7.07 8.31 -40.82 -0.34 6.74 16 43 H 0.07 0.36 7.88 -51.93 -0.41 -0.05 16 44 H 0.08 0.31 8.11 -51.93 -0.42 -0.11 16 45 H 0.10 0.25 4.43 -51.93 -0.23 0.02 16 46 H 0.17 1.15 7.75 -52.49 -0.41 0.75 16 47 H 0.15 1.05 8.06 -52.49 -0.42 0.63 16 48 H 0.18 1.34 8.06 -52.49 -0.42 0.92 16 LS Contribution 398.14 15.07 6.00 6.00 Total: -1.00 -37.66 398.14 -7.17 -44.84 By element: Atomic # 1 Polarization: 19.35 SS G_CDS: -7.17 Total: 12.18 kcal Atomic # 6 Polarization: 10.28 SS G_CDS: -0.89 Total: 9.39 kcal Atomic # 7 Polarization: -64.17 SS G_CDS: -0.26 Total: -64.43 kcal Atomic # 8 Polarization: -24.52 SS G_CDS: 0.18 Total: -24.35 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -37.66 -7.17 -44.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273275332.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.627 kcal (2) G-P(sol) polarization free energy of solvation -37.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds