Wall clock time and date at job start Tue Mar 31 2020 20:22:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46501 * 109.47027 * 2 1 4 4 C 1.46495 * 119.99903 * 81.91457 * 3 2 1 5 5 C 1.52994 * 109.47437 * 90.00204 * 4 3 2 6 6 N 1.46904 * 109.47132 * 179.97438 * 5 4 3 7 7 C 1.46898 * 110.99891 * 179.97438 * 6 5 4 8 8 C 1.50705 * 109.47023 * 179.97438 * 7 6 5 9 9 O 1.21286 * 120.00066 * 0.02562 * 8 7 6 10 10 N 1.34774 * 119.99900 * 180.02562 * 8 7 6 11 11 C 1.37100 * 119.99942 * 180.02562 * 10 8 7 12 12 H 1.07992 * 119.99728 * 359.97438 * 11 10 8 13 13 C 1.38954 * 119.99673 * 179.97438 * 11 10 8 14 14 N 1.31407 * 120.00369 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99460 * 179.97438 * 13 11 10 16 16 H 1.48495 * 109.47363 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47048 * 119.99654 * 15 13 11 18 18 H 1.48501 * 109.46843 * 239.99753 * 15 13 11 19 19 C 1.34779 * 119.99754 * 261.90668 * 3 2 1 20 20 O 1.21281 * 119.99739 * 180.70269 * 19 3 2 21 21 C 1.50698 * 119.99936 * 0.71152 * 19 3 2 22 22 H 1.08998 * 109.47501 * 312.46186 * 21 19 3 23 23 C 1.53002 * 109.47363 * 72.46244 * 21 19 3 24 24 N 1.46500 * 109.47108 * 192.46106 * 21 19 3 25 25 C 1.34951 * 126.03764 * 274.99894 * 24 21 19 26 26 C 1.35316 * 107.74788 * 179.97438 * 25 24 21 27 27 C 1.39870 * 107.91971 * 0.02562 * 26 25 24 28 28 N 1.30843 * 108.19922 * 359.73665 * 27 26 25 29 29 H 1.08995 * 109.47256 * 50.84239 * 1 2 3 30 30 H 1.09000 * 109.46670 * 170.84216 * 1 2 3 31 31 H 1.09000 * 109.46689 * 290.83924 * 1 2 3 32 32 H 1.09001 * 109.47303 * 239.99749 * 2 1 3 33 33 H 1.09002 * 109.47360 * 119.99964 * 2 1 3 34 34 H 1.09004 * 109.46911 * 210.00088 * 4 3 2 35 35 H 1.08997 * 109.47221 * 329.99321 * 4 3 2 36 36 H 1.09001 * 109.46833 * 299.99098 * 5 4 3 37 37 H 1.08997 * 109.47636 * 59.99371 * 5 4 3 38 38 H 1.00896 * 110.99860 * 56.04232 * 6 5 4 39 39 H 1.09001 * 109.47411 * 300.00184 * 7 6 5 40 40 H 1.09003 * 109.47190 * 60.00364 * 7 6 5 41 41 H 0.97004 * 120.00044 * 359.97438 * 10 8 7 42 42 H 0.96995 * 120.00106 * 180.02562 * 14 13 11 43 43 H 1.09004 * 109.46915 * 43.91811 * 23 21 19 44 44 H 1.09001 * 109.47485 * 163.91637 * 23 21 19 45 45 H 1.08998 * 109.46956 * 283.91997 * 23 21 19 46 46 H 1.07999 * 126.12349 * 359.96255 * 25 24 21 47 47 H 1.07994 * 126.03793 * 180.02562 * 26 25 24 48 48 H 1.07995 * 125.90152 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.0942 2.1313 1.2561 5 6 3.4671 1.9165 1.8963 6 7 3.5434 2.6691 3.1555 7 6 4.8506 2.4857 3.8001 8 6 4.8915 3.2713 5.0855 9 8 3.9265 3.9198 5.4309 10 7 6.0004 3.2533 5.8513 11 6 6.0374 3.9676 7.0209 12 1 5.1782 4.5450 7.3284 13 6 7.1806 3.9486 7.8106 14 7 8.2259 3.2456 7.4367 15 14 7.2312 4.9224 9.4039 16 1 5.9369 5.6244 9.5964 17 1 7.4674 3.9979 10.5418 18 1 8.3299 5.9195 9.3399 19 6 2.3979 1.9618 -1.1556 20 8 2.8141 3.1009 -1.1538 21 6 2.3048 1.1955 -2.4499 22 1 2.7376 0.2039 -2.3171 23 6 0.8365 1.0605 -2.8583 24 7 3.0386 1.9124 -3.4957 25 6 2.5562 2.9156 -4.2587 26 6 3.5424 3.3056 -5.0991 27 6 4.6659 2.5132 -4.8413 28 7 4.3667 1.6814 -3.8767 29 1 -0.3633 0.6489 -0.7968 30 1 -0.3633 -1.0146 -0.1636 31 1 -0.3633 0.3656 0.9605 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.9493 3.1927 1.0547 35 1 1.3175 1.7812 1.9358 36 1 3.6119 0.8551 2.0977 37 1 4.2439 2.2666 1.2165 38 1 2.7936 2.4086 3.7784 39 1 5.0045 1.4282 4.0151 40 1 5.6372 2.8392 3.1335 41 1 6.7721 2.7344 5.5752 42 1 9.0237 3.2320 7.9882 43 1 0.3305 2.0154 -2.7156 44 1 0.7763 0.7706 -3.9074 45 1 0.3567 0.2996 -2.2429 46 1 1.5612 3.3323 -4.2077 47 1 3.4741 4.0900 -5.8383 48 1 5.6173 2.5795 -5.3480 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273275332.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:55 Heat of formation + Delta-G solvation = -4.175941 kcal Electronic energy + Delta-G solvation = -28761.175016 eV Core-core repulsion = 24659.521472 eV Total energy + Delta-G solvation = -4101.653544 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.35707 -41.05504 -40.20147 -37.77191 -36.74773 -35.95206 -35.43032 -33.32327 -32.22884 -31.08532 -30.56252 -30.11196 -27.86957 -26.18948 -25.23160 -24.41066 -23.52876 -22.05906 -21.81450 -21.15595 -20.05167 -19.85604 -18.60378 -18.38794 -17.95322 -17.18432 -17.16772 -16.54637 -16.42555 -15.99714 -15.75198 -15.53064 -15.37735 -15.13383 -15.00254 -14.79115 -14.47291 -14.35089 -13.91927 -13.85552 -13.65536 -13.62011 -13.51602 -13.34685 -13.26710 -12.96029 -12.83288 -12.71189 -12.47452 -12.43579 -12.13648 -12.11716 -11.90506 -11.66568 -11.54815 -11.18408 -10.44712 -10.37112 -10.05792 -9.88984 -9.52570 -9.44087 -8.49817 -5.99145 0.83436 1.31501 1.34806 1.40214 1.43963 1.54955 1.90092 1.96620 1.99402 2.27412 2.90194 3.16815 3.20077 3.47465 3.50283 3.68610 3.90898 3.94170 3.98915 4.07012 4.13677 4.23932 4.31166 4.36313 4.40561 4.47765 4.51024 4.52767 4.60618 4.70510 4.73205 4.84575 4.86232 4.92058 4.95651 5.04683 5.14537 5.37905 5.39791 5.44696 5.72185 5.78100 6.01046 6.02856 6.22753 6.35066 6.55418 6.73776 6.94713 7.08453 7.50875 8.05612 8.67911 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.016872 B = 0.001950 C = 0.001815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.172868 B =14352.950642 C =15420.171060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.087 3.913 3 N -0.597 5.597 4 C 0.125 3.875 5 C 0.057 3.943 6 N -0.682 5.682 7 C 0.067 3.933 8 C 0.438 3.562 9 O -0.621 6.621 10 N -0.572 5.572 11 C -0.334 4.334 12 H 0.080 0.920 13 C -0.015 4.015 14 N -0.921 5.921 15 Si 0.996 3.004 16 H -0.273 1.273 17 H -0.268 1.268 18 H -0.272 1.272 19 C 0.496 3.504 20 O -0.572 6.572 21 C 0.144 3.856 22 H 0.139 0.861 23 C -0.161 4.161 24 N -0.367 5.367 25 C 0.064 3.936 26 C -0.286 4.286 27 C 0.039 3.961 28 N -0.339 5.339 29 H 0.068 0.932 30 H 0.095 0.905 31 H 0.056 0.944 32 H 0.102 0.898 33 H 0.093 0.907 34 H 0.064 0.936 35 H 0.106 0.894 36 H 0.052 0.948 37 H 0.048 0.952 38 H 0.351 0.649 39 H 0.072 0.928 40 H 0.092 0.908 41 H 0.396 0.604 42 H 0.278 0.722 43 H 0.070 0.930 44 H 0.093 0.907 45 H 0.123 0.877 46 H 0.192 0.808 47 H 0.168 0.832 48 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.189 -12.935 -25.237 32.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.034 4.034 3 N -0.329 5.329 4 C 0.002 3.998 5 C -0.073 4.073 6 N -0.315 5.315 7 C -0.065 4.065 8 C 0.225 3.775 9 O -0.508 6.508 10 N -0.209 5.209 11 C -0.464 4.464 12 H 0.098 0.902 13 C -0.214 4.214 14 N -0.561 5.561 15 Si 0.819 3.181 16 H -0.197 1.197 17 H -0.193 1.193 18 H -0.197 1.197 19 C 0.283 3.717 20 O -0.450 6.450 21 C 0.038 3.962 22 H 0.156 0.844 23 C -0.219 4.219 24 N -0.150 5.150 25 C -0.081 4.081 26 C -0.315 4.315 27 C -0.147 4.147 28 N -0.160 5.160 29 H 0.087 0.913 30 H 0.113 0.887 31 H 0.075 0.925 32 H 0.120 0.880 33 H 0.111 0.889 34 H 0.082 0.918 35 H 0.124 0.876 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.170 0.830 39 H 0.090 0.910 40 H 0.110 0.890 41 H 0.230 0.770 42 H 0.088 0.912 43 H 0.089 0.911 44 H 0.112 0.888 45 H 0.141 0.859 46 H 0.209 0.791 47 H 0.186 0.814 48 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -15.907 -12.387 -24.368 31.627 hybrid contribution 0.673 0.372 0.701 1.041 sum -15.233 -12.015 -23.667 30.603 Atomic orbital electron populations 1.22413 0.93847 1.04260 1.03062 1.22115 0.96123 0.79823 1.05348 1.47991 1.63688 1.15632 1.05636 1.21231 0.96476 0.97300 0.84810 1.22188 0.98499 0.96011 0.90617 1.59868 1.03688 1.61144 1.06830 1.21489 0.93553 0.98558 0.92904 1.20759 0.83555 0.85959 0.87184 1.90484 1.37312 1.48015 1.74971 1.41941 1.14499 1.44158 1.20342 1.19724 1.01166 1.26677 0.98805 0.90204 1.26101 0.94213 0.98326 1.02788 1.69680 1.04718 1.41291 1.40458 0.84831 0.78294 0.77932 0.77028 1.19713 1.19318 1.19680 1.21347 0.76925 0.86958 0.86475 1.90781 1.46647 1.20484 1.87061 1.21363 0.96150 0.95894 0.82762 0.84352 1.22478 0.88861 1.05331 1.05245 1.48488 1.09209 1.28892 1.28378 1.22920 1.01583 0.90875 0.92758 1.21852 0.93603 1.07874 1.08172 1.24395 1.01051 0.94053 0.95159 1.77272 0.94099 1.26673 1.17974 0.91295 0.88655 0.92519 0.87985 0.88864 0.91765 0.87612 0.93029 0.93371 0.82964 0.90976 0.88975 0.76994 0.91224 0.91129 0.88826 0.85858 0.79072 0.81422 0.77842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.75 9.27 71.98 0.67 -0.08 16 2 C 0.09 0.64 5.61 86.38 0.48 1.13 16 3 N -0.60 -10.09 2.48 -821.82 -2.04 -12.12 16 4 C 0.13 2.74 5.67 86.38 0.49 3.23 16 5 C 0.06 1.49 6.01 86.30 0.52 2.01 16 6 N -0.68 -22.94 6.13 -517.92 -3.17 -26.12 16 7 C 0.07 2.49 6.17 85.56 0.53 3.01 16 8 C 0.44 21.73 7.82 87.66 0.69 22.41 16 9 O -0.62 -35.48 15.78 -3.05 -0.05 -35.53 16 10 N -0.57 -30.40 5.29 -306.99 -1.62 -32.02 16 11 C -0.33 -19.45 9.68 84.04 0.81 -18.64 16 12 H 0.08 4.94 7.16 -2.91 -0.02 4.92 16 13 C -0.01 -0.80 5.50 84.93 0.47 -0.33 16 14 N -0.92 -50.67 13.05 21.66 0.28 -50.39 16 15 Si 1.00 43.67 29.55 68.60 2.03 45.69 16 16 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 17 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 18 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 19 C 0.50 11.04 6.93 87.66 0.61 11.65 16 20 O -0.57 -19.33 15.91 -3.03 -0.05 -19.38 16 21 C 0.14 2.20 2.89 44.25 0.13 2.33 16 22 H 0.14 1.63 6.71 -2.39 -0.02 1.62 16 23 C -0.16 -1.06 7.61 71.98 0.55 -0.51 16 24 N -0.37 -7.89 3.11 -331.06 -1.03 -8.91 16 25 C 0.06 1.21 10.42 83.54 0.87 2.08 16 26 C -0.29 -5.32 10.80 21.99 0.24 -5.08 16 27 C 0.04 0.82 12.03 85.24 1.03 1.85 16 28 N -0.34 -8.73 12.58 -57.02 -0.72 -9.44 16 29 H 0.07 0.29 5.72 -2.39 -0.01 0.27 16 30 H 0.09 0.01 8.14 -2.39 -0.02 -0.01 16 31 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 32 H 0.10 0.35 5.54 -2.39 -0.01 0.34 16 33 H 0.09 0.60 8.13 -2.39 -0.02 0.58 16 34 H 0.06 1.85 7.43 -2.38 -0.02 1.83 16 35 H 0.11 1.76 8.07 -2.39 -0.02 1.74 16 36 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.35 11.44 8.43 -89.70 -0.76 10.68 16 39 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 40 H 0.09 3.31 8.14 -2.39 -0.02 3.29 16 41 H 0.40 20.03 7.90 -92.71 -0.73 19.29 16 42 H 0.28 14.25 8.31 -92.71 -0.77 13.48 16 43 H 0.07 0.55 7.88 -2.38 -0.02 0.53 16 44 H 0.09 0.46 8.11 -2.39 -0.02 0.44 16 45 H 0.12 0.17 4.43 -2.39 -0.01 0.16 16 46 H 0.19 2.41 7.75 -2.91 -0.02 2.39 16 47 H 0.17 2.20 8.06 -2.91 -0.02 2.18 16 48 H 0.20 2.94 8.06 -2.91 -0.02 2.91 16 Total: -1.00 -85.07 398.14 1.21 -83.85 By element: Atomic # 1 Polarization: 39.80 SS G_CDS: -0.49 Total: 39.31 kcal Atomic # 6 Polarization: 16.99 SS G_CDS: 8.07 Total: 25.06 kcal Atomic # 7 Polarization: -130.71 SS G_CDS: -8.30 Total: -139.01 kcal Atomic # 8 Polarization: -54.82 SS G_CDS: -0.10 Total: -54.91 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.69 kcal Total: -85.07 1.21 -83.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273275332.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.678 kcal (2) G-P(sol) polarization free energy of solvation -85.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds