Wall clock time and date at job start Tue Mar 31 2020 20:22:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46493 * 109.47637 * 2 1 4 4 C 1.46494 * 120.00444 * 269.72749 * 3 2 1 5 5 C 1.53002 * 109.47325 * 270.27624 * 4 3 2 6 6 N 1.46902 * 109.47239 * 179.97438 * 5 4 3 7 7 C 1.46896 * 110.99767 * 180.02562 * 6 5 4 8 8 C 1.50707 * 109.46892 * 179.97438 * 7 6 5 9 9 O 1.21288 * 119.99764 * 359.97438 * 8 7 6 10 10 N 1.34776 * 119.99758 * 179.97438 * 8 7 6 11 11 C 1.37098 * 119.99802 * 180.02562 * 10 8 7 12 12 H 1.07996 * 119.99762 * 359.97438 * 11 10 8 13 13 C 1.38951 * 119.99830 * 180.02562 * 11 10 8 14 14 N 1.31412 * 119.99803 * 179.97438 * 13 11 10 15 15 Si 1.86797 * 120.00194 * 359.97438 * 13 11 10 16 16 H 1.48507 * 109.46831 * 90.00190 * 15 13 11 17 17 H 1.48496 * 109.46986 * 210.00229 * 15 13 11 18 18 H 1.48495 * 109.46909 * 330.00526 * 15 13 11 19 19 C 1.34784 * 119.99864 * 90.00039 * 3 2 1 20 20 O 1.21279 * 119.99925 * 179.72608 * 19 3 2 21 21 C 1.50700 * 119.99961 * 359.72839 * 19 3 2 22 22 C 1.50697 * 109.47266 * 180.02562 * 21 19 3 23 23 C 1.39864 * 126.04316 * 90.02457 * 22 21 19 24 24 N 1.30838 * 108.20565 * 179.97438 * 23 22 21 25 25 N 1.40085 * 108.20105 * 359.97438 * 24 23 22 26 26 C 1.46502 * 126.03476 * 180.02562 * 25 24 23 27 27 C 1.34949 * 107.92893 * 359.76529 * 25 24 23 28 28 H 1.09002 * 109.46747 * 300.00171 * 1 2 3 29 29 H 1.08996 * 109.47074 * 59.99445 * 1 2 3 30 30 H 1.08994 * 109.47425 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46747 * 239.99829 * 2 1 3 32 32 H 1.08996 * 109.47074 * 120.00555 * 2 1 3 33 33 H 1.09003 * 109.47006 * 30.27410 * 4 3 2 34 34 H 1.09004 * 109.47665 * 150.27102 * 4 3 2 35 35 H 1.08998 * 109.46465 * 299.99693 * 5 4 3 36 36 H 1.08993 * 109.47021 * 59.99589 * 5 4 3 37 37 H 1.00896 * 110.99800 * 56.04217 * 6 5 4 38 38 H 1.09003 * 109.46668 * 299.99040 * 7 6 5 39 39 H 1.08991 * 109.47364 * 59.99519 * 7 6 5 40 40 H 0.97000 * 120.00103 * 359.97438 * 10 8 7 41 41 H 0.96998 * 120.00059 * 179.97438 * 14 13 11 42 42 H 1.09004 * 109.46932 * 300.00223 * 21 19 3 43 43 H 1.08997 * 109.47392 * 59.99562 * 21 19 3 44 44 H 1.08010 * 125.89632 * 359.97438 * 23 22 21 45 45 H 1.09001 * 109.46913 * 89.97509 * 26 25 24 46 46 H 1.09003 * 109.47012 * 209.97639 * 26 25 24 47 47 H 1.09004 * 109.46999 * 329.97728 * 26 25 24 48 48 H 1.07997 * 126.12955 * 180.24345 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2684 2.0697 -1.2686 5 6 3.7133 1.8229 -1.7069 6 7 3.9638 2.5129 -2.9794 7 6 5.3444 2.2972 -3.4323 8 6 5.5632 3.0180 -4.7377 9 8 4.6579 3.6488 -5.2412 10 7 6.7649 2.9615 -5.3454 11 6 6.9641 3.6176 -6.5326 12 1 6.1580 4.1793 -6.9810 13 6 8.2028 3.5590 -7.1594 14 7 8.3936 4.1874 -8.2976 15 14 9.5968 2.5868 -6.3842 16 1 9.5583 1.1868 -6.8779 17 1 10.8958 3.2057 -6.7513 18 1 9.4443 2.5951 -4.9071 19 6 2.2431 2.0164 1.1673 20 8 2.6522 3.1581 1.1673 21 6 1.9861 1.3081 2.4724 22 6 2.3132 2.2310 3.6178 23 6 1.4269 3.1157 4.2408 24 7 2.0745 3.7432 5.1888 25 7 3.3953 3.2765 5.1994 26 6 4.4577 3.7168 6.1069 27 6 3.5146 2.3454 4.2299 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.5876 1.6880 -2.0295 34 1 2.1056 3.1398 -1.1395 35 1 4.3940 2.2047 -0.9460 36 1 3.8760 0.7529 -1.8361 37 1 3.7574 3.4976 -2.9034 38 1 6.0367 2.6825 -2.6837 39 1 5.5182 1.2305 -3.5731 40 1 7.4889 2.4573 -4.9424 41 1 9.2584 4.1468 -8.7350 42 1 0.9367 1.0183 2.5279 43 1 2.6123 0.4180 2.5322 44 1 0.3874 3.2566 3.9836 45 1 4.4557 3.0911 6.9994 46 1 5.4220 3.6319 5.6058 47 1 4.2859 4.7551 6.3908 48 1 4.4094 1.7926 3.9845 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273294145.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:51 Heat of formation + Delta-G solvation = 19.247933 kcal Electronic energy + Delta-G solvation = -28235.257724 eV Core-core repulsion = 24134.619915 eV Total energy + Delta-G solvation = -4100.637808 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.53742 -40.02613 -38.45124 -36.58180 -35.35051 -34.00143 -33.84475 -32.21130 -31.65726 -31.21605 -29.44758 -28.41006 -26.56511 -25.59377 -23.85605 -23.58093 -22.23877 -21.40313 -20.73193 -19.43389 -19.07028 -18.29669 -17.40334 -17.23830 -16.40712 -16.11973 -15.68443 -15.56977 -15.48120 -14.87927 -14.74446 -14.25824 -14.15404 -14.03171 -13.90842 -13.66593 -13.44433 -13.28913 -13.08891 -12.95319 -12.86655 -12.71391 -12.42292 -12.39220 -12.19455 -12.02052 -11.86542 -11.62040 -11.45733 -11.19060 -11.01892 -10.85657 -10.58638 -9.98354 -9.95910 -9.68433 -9.55769 -8.94214 -8.66896 -8.55410 -8.18207 -8.13120 -6.29503 -3.80789 1.60737 2.22693 2.40832 2.49474 2.88001 3.03499 3.07584 3.15601 3.76188 4.11128 4.17281 4.23024 4.40107 4.49134 4.57457 4.73611 4.75874 4.77144 4.83706 4.89102 4.95131 5.02018 5.05231 5.08177 5.17701 5.25220 5.25821 5.42193 5.42998 5.48727 5.50176 5.63765 5.76538 5.78846 5.82789 5.84927 5.91499 5.97509 6.31734 6.35370 6.69390 7.09027 7.20009 7.41363 7.57591 7.60272 8.05807 8.16332 8.61604 8.96680 9.44144 9.84638 10.83679 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013282 B = 0.001990 C = 0.001816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2107.546557 B =14069.634767 C =15418.477427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.103 3.897 3 N -0.614 5.614 4 C 0.117 3.883 5 C 0.047 3.953 6 N -0.667 5.667 7 C 0.050 3.950 8 C 0.451 3.549 9 O -0.564 6.564 10 N -0.591 5.591 11 C -0.304 4.304 12 H 0.120 0.880 13 C 0.040 3.960 14 N -0.882 5.882 15 Si 0.880 3.120 16 H -0.271 1.271 17 H -0.277 1.277 18 H -0.270 1.270 19 C 0.511 3.489 20 O -0.527 6.527 21 C -0.058 4.058 22 C -0.223 4.223 23 C 0.063 3.937 24 N -0.299 5.299 25 N -0.376 5.376 26 C 0.102 3.898 27 C 0.070 3.930 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.030 0.970 36 H 0.070 0.930 37 H 0.352 0.648 38 H 0.044 0.956 39 H 0.087 0.913 40 H 0.370 0.630 41 H 0.273 0.727 42 H 0.100 0.900 43 H 0.097 0.903 44 H 0.180 0.820 45 H 0.074 0.926 46 H 0.087 0.913 47 H 0.089 0.911 48 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.963 -12.709 29.295 33.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.020 4.020 3 N -0.348 5.348 4 C -0.006 4.006 5 C -0.084 4.084 6 N -0.300 5.300 7 C -0.083 4.083 8 C 0.236 3.764 9 O -0.445 6.445 10 N -0.231 5.231 11 C -0.433 4.433 12 H 0.137 0.863 13 C -0.162 4.162 14 N -0.522 5.522 15 Si 0.707 3.293 16 H -0.196 1.196 17 H -0.202 1.202 18 H -0.196 1.196 19 C 0.298 3.702 20 O -0.402 6.402 21 C -0.099 4.099 22 C -0.234 4.234 23 C -0.123 4.123 24 N -0.120 5.120 25 N -0.158 5.158 26 C -0.039 4.039 27 C -0.077 4.077 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.101 0.899 32 H 0.097 0.903 33 H 0.105 0.895 34 H 0.102 0.898 35 H 0.048 0.952 36 H 0.088 0.912 37 H 0.172 0.828 38 H 0.062 0.938 39 H 0.105 0.895 40 H 0.203 0.797 41 H 0.084 0.916 42 H 0.118 0.882 43 H 0.115 0.885 44 H 0.197 0.803 45 H 0.092 0.908 46 H 0.106 0.894 47 H 0.108 0.892 48 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -11.409 -11.162 29.430 33.479 hybrid contribution 1.941 -0.891 0.318 2.159 sum -9.468 -12.053 29.748 33.464 Atomic orbital electron populations 1.22225 0.95707 1.02410 1.02792 1.21611 0.94621 0.82303 1.03505 1.48019 1.66266 1.14555 1.06009 1.21367 0.96224 0.98809 0.84154 1.22258 0.96267 0.99516 0.90318 1.60006 1.23305 1.18485 1.28200 1.21683 0.89526 1.01156 0.95908 1.19706 0.83569 0.85962 0.87143 1.90565 1.42131 1.45227 1.66599 1.42204 1.10923 1.47588 1.22369 1.19439 0.99768 1.27915 0.96169 0.86261 1.25044 0.97549 0.97640 0.96015 1.69623 1.24525 1.42026 1.16003 0.86661 0.82657 0.80756 0.79249 1.19601 1.20204 1.19556 1.20804 0.77319 0.86837 0.85209 1.90732 1.44396 1.17927 1.87182 1.19947 1.03763 0.97152 0.88996 1.19413 0.94042 1.06666 1.03327 1.23699 1.00186 0.94639 0.93784 1.77348 0.88899 1.22593 1.23143 1.48395 1.09002 1.30863 1.27539 1.21858 0.87338 1.02147 0.92599 1.22240 0.99550 0.94311 0.91602 0.92382 0.91949 0.91376 0.89895 0.90283 0.89454 0.89837 0.95221 0.91202 0.82804 0.93791 0.89516 0.79707 0.91637 0.88175 0.88526 0.80274 0.90784 0.89447 0.89245 0.81190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.83 10.24 37.16 0.38 -0.45 16 2 C 0.10 0.55 5.93 -4.05 -0.02 0.53 16 3 N -0.61 -5.45 2.47 -173.69 -0.43 -5.88 16 4 C 0.12 1.30 5.66 -4.04 -0.02 1.28 16 5 C 0.05 0.59 6.01 -3.82 -0.02 0.56 16 6 N -0.67 -10.72 6.12 -115.06 -0.70 -11.42 16 7 C 0.05 0.86 6.17 -4.97 -0.03 0.83 16 8 C 0.45 10.48 7.82 -10.98 -0.09 10.39 16 9 O -0.56 -15.45 15.78 5.55 0.09 -15.36 16 10 N -0.59 -14.35 5.09 -10.96 -0.06 -14.41 16 11 C -0.30 -8.73 10.16 -14.93 -0.15 -8.89 16 12 H 0.12 3.91 7.39 -52.49 -0.39 3.52 16 13 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 14 N -0.88 -26.01 13.96 55.50 0.77 -25.24 16 15 Si 0.88 19.55 27.74 -169.99 -4.71 14.84 16 16 H -0.27 -5.87 7.11 56.52 0.40 -5.46 16 17 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 18 H -0.27 -5.48 6.52 56.52 0.37 -5.11 16 19 C 0.51 5.34 7.67 -10.98 -0.08 5.25 16 20 O -0.53 -8.04 15.61 5.56 0.09 -7.96 16 21 C -0.06 -0.40 4.74 -29.04 -0.14 -0.53 16 22 C -0.22 -2.06 4.59 -105.06 -0.48 -2.54 16 23 C 0.06 0.65 11.96 -17.37 -0.21 0.44 16 24 N -0.30 -3.49 12.58 30.63 0.39 -3.11 16 25 N -0.38 -3.57 4.01 -68.16 -0.27 -3.85 16 26 C 0.10 0.54 11.47 59.85 0.69 1.23 16 27 C 0.07 0.61 11.40 -17.22 -0.20 0.41 16 28 H 0.06 0.27 7.20 -51.93 -0.37 -0.10 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.08 0.43 8.07 -51.93 -0.42 0.01 16 32 H 0.08 0.27 6.44 -51.93 -0.33 -0.07 16 33 H 0.09 0.90 8.07 -51.93 -0.42 0.48 16 34 H 0.08 1.09 7.42 -51.93 -0.39 0.71 16 35 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.35 6.05 8.43 -39.29 -0.33 5.71 16 38 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 40 H 0.37 7.88 5.76 -40.82 -0.24 7.64 16 41 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 42 H 0.10 0.49 7.17 -51.93 -0.37 0.11 16 43 H 0.10 0.44 7.39 -51.93 -0.38 0.06 16 44 H 0.18 1.38 8.06 -52.48 -0.42 0.96 16 45 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 46 H 0.09 0.30 8.14 -51.93 -0.42 -0.13 16 47 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 48 H 0.17 0.98 8.06 -52.49 -0.42 0.56 16 LS Contribution 404.48 15.07 6.10 6.10 Total: -1.00 -38.71 404.48 -6.69 -45.40 By element: Atomic # 1 Polarization: 18.82 SS G_CDS: -7.46 Total: 11.36 kcal Atomic # 6 Polarization: 10.01 SS G_CDS: -0.48 Total: 9.53 kcal Atomic # 7 Polarization: -63.60 SS G_CDS: -0.30 Total: -63.91 kcal Atomic # 8 Polarization: -23.50 SS G_CDS: 0.17 Total: -23.32 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -4.71 Total: 14.84 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -38.71 -6.69 -45.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273294145.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.648 kcal (2) G-P(sol) polarization free energy of solvation -38.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds