Wall clock time and date at job start Tue Mar 31 2020 20:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46493 * 109.47637 * 2 1 4 4 C 1.46494 * 120.00444 * 269.72749 * 3 2 1 5 5 C 1.53002 * 109.47325 * 270.27624 * 4 3 2 6 6 N 1.46902 * 109.47239 * 179.97438 * 5 4 3 7 7 C 1.46896 * 110.99767 * 180.02562 * 6 5 4 8 8 C 1.50707 * 109.46892 * 179.97438 * 7 6 5 9 9 O 1.21288 * 119.99764 * 359.97438 * 8 7 6 10 10 N 1.34776 * 119.99758 * 179.97438 * 8 7 6 11 11 C 1.37098 * 119.99802 * 180.02562 * 10 8 7 12 12 H 1.07996 * 119.99762 * 359.97438 * 11 10 8 13 13 C 1.38951 * 119.99830 * 180.02562 * 11 10 8 14 14 N 1.31412 * 119.99803 * 179.97438 * 13 11 10 15 15 Si 1.86797 * 120.00194 * 359.97438 * 13 11 10 16 16 H 1.48507 * 109.46831 * 90.00190 * 15 13 11 17 17 H 1.48496 * 109.46986 * 210.00229 * 15 13 11 18 18 H 1.48495 * 109.46909 * 330.00526 * 15 13 11 19 19 C 1.34784 * 119.99864 * 90.00039 * 3 2 1 20 20 O 1.21279 * 119.99925 * 179.72608 * 19 3 2 21 21 C 1.50700 * 119.99961 * 359.72839 * 19 3 2 22 22 C 1.50697 * 109.47266 * 180.02562 * 21 19 3 23 23 C 1.39864 * 126.04316 * 90.02457 * 22 21 19 24 24 N 1.30838 * 108.20565 * 179.97438 * 23 22 21 25 25 N 1.40085 * 108.20105 * 359.97438 * 24 23 22 26 26 C 1.46502 * 126.03476 * 180.02562 * 25 24 23 27 27 C 1.34949 * 107.92893 * 359.76529 * 25 24 23 28 28 H 1.09002 * 109.46747 * 300.00171 * 1 2 3 29 29 H 1.08996 * 109.47074 * 59.99445 * 1 2 3 30 30 H 1.08994 * 109.47425 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46747 * 239.99829 * 2 1 3 32 32 H 1.08996 * 109.47074 * 120.00555 * 2 1 3 33 33 H 1.09003 * 109.47006 * 30.27410 * 4 3 2 34 34 H 1.09004 * 109.47665 * 150.27102 * 4 3 2 35 35 H 1.08998 * 109.46465 * 299.99693 * 5 4 3 36 36 H 1.08993 * 109.47021 * 59.99589 * 5 4 3 37 37 H 1.00896 * 110.99800 * 56.04217 * 6 5 4 38 38 H 1.09003 * 109.46668 * 299.99040 * 7 6 5 39 39 H 1.08991 * 109.47364 * 59.99519 * 7 6 5 40 40 H 0.97000 * 120.00103 * 359.97438 * 10 8 7 41 41 H 0.96998 * 120.00059 * 179.97438 * 14 13 11 42 42 H 1.09004 * 109.46932 * 300.00223 * 21 19 3 43 43 H 1.08997 * 109.47392 * 59.99562 * 21 19 3 44 44 H 1.08010 * 125.89632 * 359.97438 * 23 22 21 45 45 H 1.09001 * 109.46913 * 89.97509 * 26 25 24 46 46 H 1.09003 * 109.47012 * 209.97639 * 26 25 24 47 47 H 1.09004 * 109.46999 * 329.97728 * 26 25 24 48 48 H 1.07997 * 126.12955 * 180.24345 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2684 2.0697 -1.2686 5 6 3.7133 1.8229 -1.7069 6 7 3.9638 2.5129 -2.9794 7 6 5.3444 2.2972 -3.4323 8 6 5.5632 3.0180 -4.7377 9 8 4.6579 3.6488 -5.2412 10 7 6.7649 2.9615 -5.3454 11 6 6.9641 3.6176 -6.5326 12 1 6.1580 4.1793 -6.9810 13 6 8.2028 3.5590 -7.1594 14 7 8.3936 4.1874 -8.2976 15 14 9.5968 2.5868 -6.3842 16 1 9.5583 1.1868 -6.8779 17 1 10.8958 3.2057 -6.7513 18 1 9.4443 2.5951 -4.9071 19 6 2.2431 2.0164 1.1673 20 8 2.6522 3.1581 1.1673 21 6 1.9861 1.3081 2.4724 22 6 2.3132 2.2310 3.6178 23 6 1.4269 3.1157 4.2408 24 7 2.0745 3.7432 5.1888 25 7 3.3953 3.2765 5.1994 26 6 4.4577 3.7168 6.1069 27 6 3.5146 2.3454 4.2299 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.5876 1.6880 -2.0295 34 1 2.1056 3.1398 -1.1395 35 1 4.3940 2.2047 -0.9460 36 1 3.8760 0.7529 -1.8361 37 1 3.7574 3.4976 -2.9034 38 1 6.0367 2.6825 -2.6837 39 1 5.5182 1.2305 -3.5731 40 1 7.4889 2.4573 -4.9424 41 1 9.2584 4.1468 -8.7350 42 1 0.9367 1.0183 2.5279 43 1 2.6123 0.4180 2.5322 44 1 0.3874 3.2566 3.9836 45 1 4.4557 3.0911 6.9994 46 1 5.4220 3.6319 5.6058 47 1 4.2859 4.7551 6.3908 48 1 4.4094 1.7926 3.9845 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273294145.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:49 Heat of formation + Delta-G solvation = -11.620045 kcal Electronic energy + Delta-G solvation = -28236.596260 eV Core-core repulsion = 24134.619915 eV Total energy + Delta-G solvation = -4101.976344 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.17574 -40.80196 -40.29356 -37.55444 -36.47073 -35.85172 -34.55024 -33.76862 -32.89540 -31.92204 -30.28282 -29.19098 -27.76640 -26.58587 -25.29865 -24.19287 -23.24828 -22.03741 -21.45945 -21.27201 -20.34457 -19.71250 -18.14731 -17.89943 -17.77594 -17.10647 -17.03390 -16.67069 -16.30752 -16.19155 -15.64757 -15.38862 -15.33159 -14.97261 -14.83468 -14.68544 -14.40904 -14.36476 -14.14782 -13.97280 -13.76744 -13.52701 -13.43669 -13.36062 -13.19072 -12.97821 -12.79411 -12.66609 -12.51764 -12.42299 -11.99975 -11.98322 -11.87789 -11.52490 -11.49380 -10.80628 -10.49224 -10.35238 -10.26301 -9.65785 -9.42262 -9.29924 -8.42137 -6.03434 0.97532 1.29744 1.35330 1.44353 1.66462 1.74951 1.75771 1.93087 2.17585 2.22667 2.78717 3.13571 3.45037 3.65374 3.79667 3.99012 4.04886 4.12971 4.15308 4.20816 4.28478 4.31512 4.40608 4.42625 4.45376 4.49819 4.54278 4.58197 4.66874 4.71602 4.78463 4.87391 4.90461 4.96006 5.04731 5.09086 5.19970 5.48693 5.50575 5.62112 5.70791 5.87383 5.99814 6.15973 6.25827 6.53287 6.58140 6.74653 6.86360 7.32186 7.37686 7.94122 8.75507 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013282 B = 0.001990 C = 0.001816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2107.546557 B =14069.634767 C =15418.477427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.097 3.903 3 N -0.608 5.608 4 C 0.122 3.878 5 C 0.058 3.942 6 N -0.682 5.682 7 C 0.064 3.936 8 C 0.447 3.553 9 O -0.614 6.614 10 N -0.590 5.590 11 C -0.330 4.330 12 H 0.055 0.945 13 C -0.017 4.017 14 N -0.934 5.934 15 Si 0.967 3.033 16 H -0.254 1.254 17 H -0.275 1.275 18 H -0.233 1.233 19 C 0.507 3.493 20 O -0.585 6.585 21 C -0.047 4.047 22 C -0.238 4.238 23 C 0.047 3.953 24 N -0.342 5.342 25 N -0.384 5.384 26 C 0.093 3.907 27 C 0.065 3.935 28 H 0.059 0.941 29 H 0.043 0.957 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.109 0.891 33 H 0.094 0.906 34 H 0.054 0.946 35 H 0.022 0.978 36 H 0.093 0.907 37 H 0.341 0.659 38 H 0.070 0.930 39 H 0.121 0.879 40 H 0.390 0.610 41 H 0.280 0.720 42 H 0.123 0.877 43 H 0.130 0.870 44 H 0.192 0.808 45 H 0.091 0.909 46 H 0.108 0.892 47 H 0.084 0.916 48 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.341 -16.713 31.976 37.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.024 4.024 3 N -0.341 5.341 4 C -0.002 4.002 5 C -0.072 4.072 6 N -0.314 5.314 7 C -0.068 4.068 8 C 0.235 3.765 9 O -0.499 6.499 10 N -0.231 5.231 11 C -0.459 4.459 12 H 0.073 0.927 13 C -0.215 4.215 14 N -0.574 5.574 15 Si 0.787 3.213 16 H -0.178 1.178 17 H -0.200 1.200 18 H -0.156 1.156 19 C 0.297 3.703 20 O -0.464 6.464 21 C -0.087 4.087 22 C -0.250 4.250 23 C -0.138 4.138 24 N -0.164 5.164 25 N -0.166 5.166 26 C -0.047 4.047 27 C -0.082 4.082 28 H 0.078 0.922 29 H 0.063 0.937 30 H 0.105 0.895 31 H 0.108 0.892 32 H 0.127 0.873 33 H 0.112 0.888 34 H 0.073 0.927 35 H 0.040 0.960 36 H 0.111 0.889 37 H 0.159 0.841 38 H 0.088 0.912 39 H 0.139 0.861 40 H 0.226 0.774 41 H 0.089 0.911 42 H 0.141 0.859 43 H 0.148 0.852 44 H 0.208 0.792 45 H 0.110 0.890 46 H 0.127 0.873 47 H 0.102 0.898 48 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -9.816 -15.222 32.143 36.895 hybrid contribution 1.317 0.418 -0.564 1.493 sum -8.499 -14.804 31.579 35.898 Atomic orbital electron populations 1.22208 0.95329 1.03396 1.02002 1.21922 0.94910 0.80210 1.05363 1.48102 1.65497 1.15768 1.04722 1.21159 0.95820 0.97618 0.85569 1.22253 0.96598 1.00096 0.88231 1.60041 1.22787 1.18083 1.30478 1.21618 0.90766 1.02028 0.92396 1.20957 0.82304 0.84666 0.88537 1.90545 1.43729 1.47176 1.68413 1.42016 1.12145 1.47742 1.21232 1.19012 0.99010 1.29358 0.98552 0.92733 1.26158 1.00687 0.98465 0.96218 1.69808 1.25891 1.43710 1.18016 0.85336 0.76961 0.78863 0.80168 1.17838 1.20003 1.15596 1.21484 0.76087 0.86235 0.86496 1.90713 1.47209 1.20530 1.87990 1.20010 1.05854 0.97097 0.85780 1.19754 0.94071 1.07099 1.04047 1.24076 1.01121 0.94840 0.93808 1.77260 0.90467 1.24151 1.24557 1.48750 1.08847 1.30868 1.28147 1.22149 0.87213 1.02223 0.93100 1.22816 1.00461 0.93957 0.90964 0.92241 0.93749 0.89464 0.89199 0.87264 0.88800 0.92731 0.95979 0.88889 0.84082 0.91225 0.86146 0.77414 0.91099 0.85878 0.85224 0.79152 0.89012 0.87339 0.89763 0.78302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.15 10.24 71.98 0.74 -0.41 16 2 C 0.10 0.69 5.93 86.38 0.51 1.20 16 3 N -0.61 -9.47 2.47 -821.82 -2.03 -11.50 16 4 C 0.12 2.59 5.66 86.38 0.49 3.08 16 5 C 0.06 1.32 6.01 86.30 0.52 1.83 16 6 N -0.68 -21.07 6.12 -517.94 -3.17 -24.24 16 7 C 0.06 2.04 6.17 85.56 0.53 2.56 16 8 C 0.45 20.75 7.82 87.66 0.69 21.44 16 9 O -0.61 -35.01 15.78 -3.05 -0.05 -35.06 16 10 N -0.59 -28.30 5.09 -306.98 -1.56 -29.87 16 11 C -0.33 -19.65 10.16 84.04 0.85 -18.80 16 12 H 0.05 3.87 7.39 -2.91 -0.02 3.85 16 13 C -0.02 -0.94 5.50 84.93 0.47 -0.47 16 14 N -0.93 -56.81 13.96 21.66 0.30 -56.50 16 15 Si 0.97 38.94 27.74 68.60 1.90 40.84 16 16 H -0.25 -9.60 7.11 99.48 0.71 -8.89 16 17 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 18 H -0.23 -7.90 6.52 99.48 0.65 -7.25 16 19 C 0.51 9.73 7.67 87.66 0.67 10.41 16 20 O -0.58 -17.87 15.61 -3.03 -0.05 -17.91 16 21 C -0.05 -0.50 4.74 29.10 0.14 -0.37 16 22 C -0.24 -4.02 4.59 -20.15 -0.09 -4.12 16 23 C 0.05 0.95 11.96 85.23 1.02 1.97 16 24 N -0.34 -8.08 12.58 -57.02 -0.72 -8.80 16 25 N -0.38 -6.97 4.01 -369.55 -1.48 -8.45 16 26 C 0.09 0.88 11.47 127.77 1.47 2.34 16 27 C 0.07 1.01 11.40 83.54 0.95 1.97 16 28 H 0.06 0.39 7.20 -2.39 -0.02 0.37 16 29 H 0.04 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.09 0.28 8.14 -2.39 -0.02 0.26 16 31 H 0.09 0.57 8.07 -2.39 -0.02 0.55 16 32 H 0.11 0.16 6.44 -2.39 -0.02 0.15 16 33 H 0.09 1.85 8.07 -2.39 -0.02 1.83 16 34 H 0.05 1.48 7.42 -2.38 -0.02 1.47 16 35 H 0.02 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.34 11.86 8.43 -89.70 -0.76 11.10 16 38 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.12 3.07 8.14 -2.39 -0.02 3.05 16 40 H 0.39 15.40 5.76 -92.71 -0.53 14.87 16 41 H 0.28 15.49 8.31 -92.71 -0.77 14.72 16 42 H 0.12 0.76 7.17 -2.38 -0.02 0.74 16 43 H 0.13 0.54 7.39 -2.39 -0.02 0.52 16 44 H 0.19 2.98 8.06 -2.91 -0.02 2.96 16 45 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 46 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 47 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 48 H 0.20 1.66 8.06 -2.91 -0.02 1.64 16 Total: -1.00 -92.53 404.48 1.72 -90.81 By element: Atomic # 1 Polarization: 38.40 SS G_CDS: -0.37 Total: 38.03 kcal Atomic # 6 Polarization: 13.70 SS G_CDS: 8.95 Total: 22.65 kcal Atomic # 7 Polarization: -130.69 SS G_CDS: -8.66 Total: -139.36 kcal Atomic # 8 Polarization: -52.88 SS G_CDS: -0.10 Total: -52.97 kcal Atomic # 14 Polarization: 38.94 SS G_CDS: 1.90 Total: 40.84 kcal Total: -92.53 1.72 -90.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273294145.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.190 kcal (2) G-P(sol) polarization free energy of solvation -92.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds