Wall clock time and date at job start Tue Mar 31 2020 20:21:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46501 * 109.46785 * 2 1 4 4 C 1.46498 * 120.00169 * 85.02467 * 3 2 1 5 5 C 1.53003 * 109.46965 * 95.25482 * 4 3 2 6 6 N 1.46898 * 109.47039 * 179.97438 * 5 4 3 7 7 C 1.46901 * 111.00008 * 179.97438 * 6 5 4 8 8 C 1.50702 * 109.47355 * 180.02562 * 7 6 5 9 9 O 1.21290 * 119.99730 * 359.97438 * 8 7 6 10 10 N 1.34772 * 119.99943 * 180.02562 * 8 7 6 11 11 C 1.37102 * 119.99825 * 179.97438 * 10 8 7 12 12 H 1.08003 * 119.99919 * 359.97438 * 11 10 8 13 13 C 1.38950 * 120.00049 * 179.97438 * 11 10 8 14 14 N 1.31412 * 119.99849 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 119.99995 * 179.97438 * 13 11 10 16 16 H 1.48509 * 109.47124 * 90.00272 * 15 13 11 17 17 H 1.48501 * 109.47177 * 209.99687 * 15 13 11 18 18 H 1.48498 * 109.47559 * 329.99966 * 15 13 11 19 19 C 1.34777 * 119.99976 * 264.75055 * 3 2 1 20 20 O 1.21572 * 119.99947 * 5.39726 * 19 3 2 21 21 C 1.47708 * 120.00304 * 185.39565 * 19 3 2 22 22 N 1.31808 * 126.51583 * 354.71261 * 21 19 3 23 23 N 1.28476 * 110.07271 * 179.81903 * 22 21 19 24 24 H 0.96995 * 124.88244 * 180.15642 * 23 22 21 25 25 C 1.35034 * 110.22887 * 0.45962 * 23 22 21 26 26 C 1.50692 * 126.38386 * 179.74440 * 25 23 22 27 27 C 1.35365 * 107.22861 * 359.72670 * 25 23 22 28 28 C 1.50697 * 127.24615 * 180.02562 * 27 25 23 29 29 H 1.08995 * 109.47542 * 59.99975 * 1 2 3 30 30 H 1.09006 * 109.47091 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47543 * 299.99877 * 1 2 3 32 32 H 1.08999 * 109.47096 * 240.00313 * 2 1 3 33 33 H 1.09003 * 109.47323 * 119.99789 * 2 1 3 34 34 H 1.09000 * 109.47171 * 215.25352 * 4 3 2 35 35 H 1.08997 * 109.47407 * 335.25464 * 4 3 2 36 36 H 1.09000 * 109.47069 * 299.99932 * 5 4 3 37 37 H 1.08997 * 109.47072 * 59.99777 * 5 4 3 38 38 H 1.00905 * 110.99989 * 56.05015 * 6 5 4 39 39 H 1.08999 * 109.47198 * 300.00257 * 7 6 5 40 40 H 1.08996 * 109.47500 * 59.99830 * 7 6 5 41 41 H 0.97002 * 120.00756 * 359.97438 * 10 8 7 42 42 H 0.97008 * 120.00072 * 179.97438 * 14 13 11 43 43 H 1.09005 * 109.47445 * 269.97488 * 26 25 23 44 44 H 1.09004 * 109.47554 * 29.97523 * 26 25 23 45 45 H 1.08999 * 109.46979 * 149.97395 * 26 25 23 46 46 H 1.08997 * 109.46630 * 269.99195 * 28 27 25 47 47 H 1.08997 * 109.47572 * 29.99003 * 28 27 25 48 48 H 1.09001 * 109.47224 * 149.99566 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1586 2.1086 1.2639 5 6 3.6003 1.9908 1.7627 6 7 3.7412 2.7206 3.0297 7 6 5.1157 2.6288 3.5400 8 6 5.2213 3.3870 4.8381 9 8 4.2475 3.9491 5.2931 10 7 6.3980 3.4415 5.4929 11 6 6.4943 4.1317 6.6735 12 1 5.6272 4.6322 7.0786 13 6 7.7073 4.1874 7.3489 14 7 8.7622 3.5781 6.8562 15 14 7.8385 5.1285 8.9571 16 1 7.5333 4.2179 10.0899 17 1 9.2165 5.6613 9.1079 18 1 6.8703 6.2544 8.9523 19 6 2.3435 1.9810 -1.1623 20 8 2.1399 1.4125 -2.2175 21 6 2.9473 3.3290 -1.1542 22 7 3.1340 4.0985 -0.1005 23 7 3.6872 5.2030 -0.4535 24 1 3.9227 5.9236 0.1516 25 6 3.8873 5.2191 -1.7888 26 6 4.5053 6.3382 -2.5866 27 6 3.4297 4.0424 -2.2770 28 6 3.4338 3.5877 -3.7137 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.9128 3.1590 1.1079 35 1 1.4819 1.6833 2.0050 36 1 3.8461 0.9404 1.9187 37 1 4.2770 2.4161 1.0216 38 1 3.0787 2.3879 3.7142 39 1 5.3715 1.5827 3.7089 40 1 5.8033 3.0578 2.8113 41 1 7.1770 2.9923 5.1289 42 1 9.6092 3.6172 7.3275 43 1 3.7249 7.0254 -2.9137 44 1 5.2238 6.8734 -1.9657 45 1 5.0143 5.9254 -3.4576 46 1 2.5053 3.8953 -4.1947 47 1 4.2791 4.0372 -4.2348 48 1 3.5197 2.5017 -3.7509 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273305429.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:42 Heat of formation + Delta-G solvation = 7.451598 kcal Electronic energy + Delta-G solvation = -29405.718497 eV Core-core repulsion = 25304.569162 eV Total energy + Delta-G solvation = -4101.149336 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.84737 -39.75974 -38.28769 -36.63178 -34.95809 -33.83015 -33.62843 -32.83079 -31.33294 -31.13370 -28.98942 -28.42480 -26.28313 -25.93688 -24.82294 -23.98612 -22.53256 -21.90805 -20.12144 -19.37709 -18.83058 -17.90789 -17.78982 -16.75013 -16.46425 -16.18411 -15.96895 -15.51087 -14.83550 -14.57354 -14.43892 -14.20695 -14.01381 -13.82356 -13.72619 -13.36191 -13.29060 -13.16264 -13.01876 -12.97971 -12.71279 -12.45022 -12.33721 -12.17120 -11.96582 -11.92828 -11.51720 -11.48935 -11.17886 -11.14471 -11.01223 -10.54607 -10.41240 -10.23524 -10.01447 -9.52317 -9.39268 -8.86578 -8.73994 -8.42310 -8.02515 -7.96113 -6.43196 -3.84118 1.51774 1.93155 2.65634 2.95578 3.16117 3.24810 3.30625 3.32717 3.90232 4.07247 4.19809 4.47840 4.53628 4.72969 4.84664 4.96035 5.05668 5.07954 5.13639 5.18449 5.19456 5.24679 5.26615 5.31774 5.50734 5.51734 5.57468 5.60692 5.68808 5.72958 5.79364 5.83309 5.93491 5.97498 6.01132 6.04437 6.12256 6.26172 6.40266 6.51118 6.92272 7.19527 7.28385 7.53511 7.70949 7.78279 8.05054 8.11331 8.60010 9.16443 9.53223 10.04704 10.74594 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.012840 B = 0.002556 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2180.167482 B =10952.641124 C =12530.051993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.111 3.889 3 N -0.601 5.601 4 C 0.108 3.892 5 C 0.054 3.946 6 N -0.658 5.658 7 C 0.054 3.946 8 C 0.442 3.558 9 O -0.582 6.582 10 N -0.565 5.565 11 C -0.299 4.299 12 H 0.103 0.897 13 C 0.022 3.978 14 N -0.902 5.902 15 Si 0.930 3.070 16 H -0.278 1.278 17 H -0.284 1.284 18 H -0.269 1.269 19 C 0.607 3.393 20 O -0.535 6.535 21 C -0.025 4.025 22 N -0.226 5.226 23 N -0.375 5.375 24 H 0.448 0.552 25 C 0.005 3.995 26 C -0.084 4.084 27 C -0.148 4.148 28 C -0.075 4.075 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.112 0.888 35 H 0.075 0.925 36 H 0.020 0.980 37 H 0.073 0.927 38 H 0.347 0.653 39 H 0.041 0.959 40 H 0.082 0.918 41 H 0.392 0.608 42 H 0.271 0.729 43 H 0.077 0.923 44 H 0.071 0.929 45 H 0.084 0.916 46 H 0.065 0.935 47 H 0.059 0.941 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.701 -1.561 -19.850 22.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.012 4.012 3 N -0.334 5.334 4 C -0.015 4.015 5 C -0.077 4.077 6 N -0.291 5.291 7 C -0.079 4.079 8 C 0.228 3.772 9 O -0.467 6.467 10 N -0.202 5.202 11 C -0.429 4.429 12 H 0.121 0.879 13 C -0.180 4.180 14 N -0.544 5.544 15 Si 0.757 3.243 16 H -0.204 1.204 17 H -0.209 1.209 18 H -0.194 1.194 19 C 0.394 3.606 20 O -0.410 6.410 21 C -0.185 4.185 22 N -0.062 5.062 23 N -0.089 5.089 24 H 0.293 0.707 25 C -0.120 4.120 26 C -0.142 4.142 27 C -0.158 4.158 28 C -0.132 4.132 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.104 0.896 33 H 0.094 0.906 34 H 0.130 0.870 35 H 0.093 0.907 36 H 0.038 0.962 37 H 0.091 0.909 38 H 0.166 0.834 39 H 0.059 0.941 40 H 0.100 0.900 41 H 0.225 0.775 42 H 0.081 0.919 43 H 0.096 0.904 44 H 0.090 0.910 45 H 0.103 0.897 46 H 0.084 0.916 47 H 0.078 0.922 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -10.345 -0.906 -19.204 21.832 hybrid contribution 1.073 -0.373 0.689 1.329 sum -9.272 -1.279 -18.514 20.746 Atomic orbital electron populations 1.22123 0.95737 1.02150 1.02474 1.21471 0.94554 0.81864 1.03275 1.47812 1.64563 1.14325 1.06683 1.21812 0.96454 0.99258 0.84016 1.22230 0.97347 0.95105 0.92987 1.59935 1.04783 1.59236 1.05152 1.21631 0.91179 0.98449 0.96637 1.19812 0.84481 0.86253 0.86702 1.90519 1.37206 1.49747 1.69183 1.41873 1.09679 1.47187 1.21412 1.19700 0.97099 1.28227 0.97830 0.87934 1.25262 0.94949 0.97898 0.99866 1.69616 1.01089 1.43558 1.40106 0.85863 0.77472 0.79648 0.81335 1.20412 1.20932 1.19408 1.16975 0.76988 0.83201 0.83469 1.90742 1.54644 1.65081 1.30541 1.21733 1.09000 0.97019 0.90723 1.73973 1.13037 0.94388 1.24850 1.43455 1.43761 1.14897 1.06809 0.70737 1.21208 1.06582 0.99079 0.85139 1.20337 1.00298 0.94467 0.99123 1.20024 1.05405 0.93471 0.96874 1.20135 1.01277 1.02586 0.89236 0.92202 0.91609 0.92423 0.89619 0.90556 0.86993 0.90674 0.96172 0.90881 0.83442 0.94090 0.89969 0.77500 0.91879 0.90422 0.90990 0.89711 0.91642 0.92163 0.90293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.46 10.24 37.16 0.38 -1.08 16 2 C 0.11 1.10 6.13 -4.04 -0.02 1.07 16 3 N -0.60 -7.20 2.48 -174.85 -0.43 -7.63 16 4 C 0.11 1.29 5.26 -4.04 -0.02 1.27 16 5 C 0.05 0.72 5.44 -3.82 -0.02 0.70 16 6 N -0.66 -10.57 6.13 -115.06 -0.70 -11.28 16 7 C 0.05 0.96 6.17 -4.97 -0.03 0.93 16 8 C 0.44 10.37 7.82 -10.99 -0.09 10.28 16 9 O -0.58 -15.61 15.78 5.55 0.09 -15.52 16 10 N -0.56 -14.28 5.29 -10.96 -0.06 -14.34 16 11 C -0.30 -8.31 9.68 -14.93 -0.14 -8.45 16 12 H 0.10 2.98 7.16 -52.48 -0.38 2.61 16 13 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 14 N -0.90 -24.52 13.05 55.50 0.72 -23.80 16 15 Si 0.93 20.94 29.55 -169.99 -5.02 15.92 16 16 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 17 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 18 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 19 C 0.61 8.43 7.63 -12.39 -0.09 8.33 16 20 O -0.53 -8.29 14.73 5.30 0.08 -8.21 16 21 C -0.02 -0.33 6.47 -82.77 -0.54 -0.87 16 22 N -0.23 -2.90 7.33 33.42 0.25 -2.65 16 23 N -0.37 -3.91 6.83 33.50 0.23 -3.68 16 24 H 0.45 3.67 8.96 -190.44 -1.71 1.96 16 25 C 0.01 0.05 7.23 -82.21 -0.59 -0.54 16 26 C -0.08 -0.50 10.26 36.00 0.37 -0.13 16 27 C -0.15 -1.72 6.25 -104.41 -0.65 -2.37 16 28 C -0.07 -0.74 9.69 36.00 0.35 -0.39 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.09 0.90 7.35 -51.93 -0.38 0.52 16 33 H 0.08 0.65 8.11 -51.93 -0.42 0.23 16 34 H 0.11 1.49 5.62 -51.93 -0.29 1.19 16 35 H 0.07 0.80 8.03 -51.93 -0.42 0.38 16 36 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 37 H 0.07 1.07 6.60 -51.93 -0.34 0.73 16 38 H 0.35 5.64 8.43 -39.29 -0.33 5.31 16 39 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 41 H 0.39 9.53 7.90 -40.82 -0.32 9.21 16 42 H 0.27 6.97 8.31 -40.82 -0.34 6.64 16 43 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.08 0.44 7.31 -51.93 -0.38 0.06 16 46 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.06 0.46 7.31 -51.93 -0.38 0.08 16 48 H 0.08 0.91 6.83 -51.93 -0.35 0.55 16 LS Contribution 397.43 15.07 5.99 5.99 Total: -1.00 -33.64 397.43 -8.71 -42.35 By element: Atomic # 1 Polarization: 22.26 SS G_CDS: -8.64 Total: 13.61 kcal Atomic # 6 Polarization: 10.44 SS G_CDS: -1.20 Total: 9.24 kcal Atomic # 7 Polarization: -63.38 SS G_CDS: 0.00 Total: -63.38 kcal Atomic # 8 Polarization: -23.90 SS G_CDS: 0.17 Total: -23.74 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -33.64 -8.71 -42.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273305429.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.806 kcal (2) G-P(sol) polarization free energy of solvation -33.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.354 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds