Wall clock time and date at job start Tue Mar 31 2020 21:16:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 N 1.28609 * 124.61785 * 2 1 4 4 C 1.31377 * 108.71787 * 179.97438 * 3 2 1 5 5 C 1.39677 * 105.90073 * 0.02562 * 4 3 2 6 6 C 1.50701 * 127.04930 * 179.97438 * 5 4 3 7 7 C 1.52998 * 109.47345 * 124.99777 * 6 5 4 8 8 C 1.50706 * 109.47038 * 180.02562 * 7 6 5 9 9 O 1.21280 * 119.99991 * 359.97438 * 8 7 6 10 10 N 1.34775 * 119.99528 * 179.97438 * 8 7 6 11 11 C 1.46922 * 120.63610 * 359.97438 * 10 8 7 12 12 C 1.53187 * 108.77857 * 126.41416 * 11 10 8 13 13 C 1.53036 * 109.31230 * 54.63534 * 12 11 10 14 14 C 1.53043 * 109.54027 * 298.63421 * 13 12 11 15 15 C 1.52999 * 109.52611 * 181.33411 * 14 13 12 16 16 O 1.42900 * 109.46718 * 180.02562 * 15 14 13 17 17 N 1.46506 * 109.49580 * 301.41786 * 14 13 12 18 18 C 1.36938 * 119.99589 * 179.83731 * 17 14 13 19 19 H 1.07999 * 120.00325 * 359.97438 * 18 17 14 20 20 C 1.38815 * 119.99817 * 180.02562 * 18 17 14 21 21 N 1.31621 * 119.99673 * 359.71804 * 20 18 17 22 22 Si 1.86795 * 120.00115 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47274 * 89.99913 * 22 20 18 24 24 H 1.48505 * 109.47015 * 209.99478 * 22 20 18 25 25 H 1.48498 * 109.47362 * 329.99904 * 22 20 18 26 26 C 1.46931 * 120.62556 * 179.97438 * 10 8 7 27 27 N 1.28606 * 124.62254 * 180.24846 * 2 1 3 28 28 H 1.09000 * 109.47146 * 90.02728 * 1 2 3 29 29 H 1.09004 * 109.47259 * 210.02166 * 1 2 3 30 30 H 1.09004 * 109.47374 * 330.02496 * 1 2 3 31 31 H 1.07991 * 127.05099 * 179.97438 * 4 3 2 32 32 H 1.09000 * 109.47425 * 4.98836 * 6 5 4 33 33 H 1.09002 * 109.47129 * 244.99506 * 6 5 4 34 34 H 1.08993 * 109.47444 * 59.99483 * 7 6 5 35 35 H 1.08998 * 109.46525 * 299.99496 * 7 6 5 36 36 H 1.09002 * 109.58260 * 246.20396 * 11 10 8 37 37 H 1.09002 * 109.58609 * 6.62139 * 11 10 8 38 38 H 1.09002 * 109.50104 * 174.58834 * 12 11 10 39 39 H 1.09003 * 109.49287 * 294.65113 * 12 11 10 40 40 H 1.09005 * 109.46108 * 178.62064 * 13 12 11 41 41 H 1.08998 * 109.46508 * 58.65844 * 13 12 11 42 42 H 1.09001 * 109.46778 * 300.08176 * 15 14 13 43 43 H 1.09001 * 109.46916 * 60.08512 * 15 14 13 44 44 H 0.96704 * 113.99357 * 180.02562 * 16 15 14 45 45 H 0.96999 * 120.00080 * 359.83221 * 17 14 13 46 46 H 0.97000 * 120.00043 * 180.02562 * 21 20 18 47 47 H 1.08998 * 109.58577 * 113.80215 * 26 10 8 48 48 H 1.09002 * 109.58928 * 353.37351 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.1955 1.0584 0.0000 4 6 3.4590 0.6985 0.0006 5 6 3.4591 -0.6983 0.0003 6 6 4.6619 -1.6062 0.0002 7 6 4.5704 -2.5741 1.1817 8 6 5.7736 -3.4816 1.1818 9 8 6.6205 -3.3660 0.3214 10 7 5.9083 -4.4216 2.1382 11 6 4.8911 -4.5735 3.1874 12 6 4.4266 -6.0329 3.2164 13 6 5.6421 -6.9477 3.3824 14 6 6.5866 -6.7651 2.1921 15 6 7.7854 -7.7039 2.3418 16 8 8.6667 -7.5319 1.2302 17 7 5.8741 -7.0758 0.9503 18 6 6.5208 -6.9786 -0.2528 19 1 7.5560 -6.6724 -0.2863 20 6 5.8456 -7.2725 -1.4295 21 7 4.5854 -7.6500 -1.3883 22 14 6.7275 -7.1392 -3.0707 23 1 7.3598 -8.4418 -3.4002 24 1 5.7503 -6.7814 -4.1301 25 1 7.7735 -6.0885 -2.9867 26 6 7.0754 -5.3142 2.1513 27 7 2.1956 -1.0583 -0.0046 28 1 -0.3633 -0.0005 -1.0277 29 1 -0.3634 -0.8898 0.5142 30 1 -0.3634 0.8902 0.5135 31 1 4.3210 1.3491 0.0003 32 1 5.5687 -1.0081 0.0897 33 1 4.6902 -2.1717 -0.9313 34 1 3.6637 -3.1722 1.0921 35 1 4.5422 -2.0086 2.1131 36 1 5.3201 -4.3072 4.1534 37 1 4.0429 -3.9241 2.9706 38 1 3.7431 -6.1807 4.0525 39 1 3.9163 -6.2708 2.2830 40 1 5.3120 -7.9856 3.4279 41 1 6.1655 -6.6926 4.3038 42 1 8.3151 -7.4723 3.2658 43 1 7.4368 -8.7363 2.3717 44 1 9.4506 -8.0975 1.2586 45 1 4.9443 -7.3505 0.9804 46 1 4.1136 -7.8557 -2.2105 47 1 7.6828 -5.1085 3.0327 48 1 7.6684 -5.1537 1.2509 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273911296.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:42 Heat of formation + Delta-G solvation = 46.710247 kcal Electronic energy + Delta-G solvation = -30768.932977 eV Core-core repulsion = 26669.486024 eV Total energy + Delta-G solvation = -4099.446953 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.54657 -39.78382 -37.78604 -35.69909 -34.77480 -33.74748 -32.91989 -32.17917 -31.55136 -30.92265 -28.61285 -27.83507 -25.79648 -25.20288 -23.73819 -23.42094 -22.33658 -21.62285 -20.63183 -19.03407 -18.12449 -17.42971 -17.18984 -16.86725 -16.50062 -16.16072 -15.53558 -15.21867 -14.85354 -14.68380 -14.12174 -14.03027 -13.72196 -13.61808 -13.40722 -13.19863 -13.14541 -13.00235 -12.75800 -12.53873 -12.13409 -12.04259 -11.78462 -11.63189 -11.41428 -11.11531 -10.84591 -10.76044 -10.68448 -10.65040 -10.55973 -10.37631 -10.21497 -10.09250 -9.66384 -9.49559 -9.21579 -9.00913 -8.93290 -8.72069 -7.93811 -6.74511 -5.50935 -2.76330 1.78687 2.28528 2.42267 3.30770 3.62165 3.64452 3.67715 3.74406 4.05068 4.68627 4.80509 4.80849 4.85531 4.90811 5.00838 5.06012 5.16167 5.25516 5.32111 5.37310 5.43811 5.49657 5.54980 5.67953 5.70808 5.83723 5.86590 5.91287 5.93111 5.95379 6.07830 6.12414 6.15015 6.24068 6.30152 6.32926 6.39357 6.44200 6.65990 6.69069 6.84479 6.98274 7.21764 8.07728 8.22201 8.31822 8.41288 8.67045 8.89665 9.80782 10.28546 10.64200 11.72795 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011442 B = 0.003685 C = 0.003221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2446.488348 B = 7596.879328 C = 8691.525431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.165 5.165 3 N -0.296 5.296 4 C -0.024 4.024 5 C 0.012 3.988 6 C -0.015 4.015 7 C -0.129 4.129 8 C 0.521 3.479 9 O -0.532 6.532 10 N -0.596 5.596 11 C 0.111 3.889 12 C -0.132 4.132 13 C -0.115 4.115 14 C 0.188 3.812 15 C 0.076 3.924 16 O -0.540 6.540 17 N -0.703 5.703 18 C -0.196 4.196 19 H 0.091 0.909 20 C -0.023 4.023 21 N -0.947 5.947 22 Si 0.901 3.099 23 H -0.296 1.296 24 H -0.298 1.298 25 H -0.281 1.281 26 C 0.112 3.888 27 N -0.282 5.282 28 H 0.087 0.913 29 H 0.102 0.898 30 H 0.100 0.900 31 H 0.197 0.803 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.097 0.903 35 H 0.083 0.917 36 H 0.059 0.941 37 H 0.078 0.922 38 H 0.065 0.935 39 H 0.081 0.919 40 H 0.065 0.935 41 H 0.060 0.940 42 H 0.023 0.977 43 H 0.039 0.961 44 H 0.353 0.647 45 H 0.381 0.619 46 H 0.248 0.752 47 H 0.042 0.958 48 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.471 11.704 12.629 17.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.030 4.030 2 N -0.065 5.065 3 N -0.137 5.137 4 C -0.207 4.207 5 C -0.151 4.151 6 C -0.055 4.055 7 C -0.170 4.170 8 C 0.308 3.692 9 O -0.408 6.408 10 N -0.328 5.328 11 C -0.012 4.012 12 C -0.171 4.171 13 C -0.153 4.153 14 C 0.095 3.905 15 C -0.006 4.006 16 O -0.342 6.342 17 N -0.343 5.343 18 C -0.327 4.327 19 H 0.109 0.891 20 C -0.216 4.216 21 N -0.598 5.598 22 Si 0.734 3.266 23 H -0.225 1.225 24 H -0.225 1.225 25 H -0.207 1.207 26 C -0.013 4.013 27 N -0.125 5.125 28 H 0.105 0.895 29 H 0.121 0.879 30 H 0.118 0.882 31 H 0.214 0.786 32 H 0.110 0.890 33 H 0.112 0.888 34 H 0.115 0.885 35 H 0.102 0.898 36 H 0.077 0.923 37 H 0.096 0.904 38 H 0.084 0.916 39 H 0.100 0.900 40 H 0.084 0.916 41 H 0.079 0.921 42 H 0.041 0.959 43 H 0.057 0.943 44 H 0.198 0.802 45 H 0.216 0.784 46 H 0.058 0.942 47 H 0.060 0.940 48 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -5.807 12.268 11.823 18.000 hybrid contribution 1.216 -0.625 -0.724 1.547 sum -4.592 11.643 11.099 16.728 Atomic orbital electron populations 1.22071 0.70517 1.05619 1.04820 1.47910 1.08783 0.99461 1.50352 1.73992 1.04022 1.16270 1.19434 1.24662 0.94360 0.94803 1.06845 1.23321 0.92690 0.94125 1.04914 1.19668 0.91189 0.94786 0.99871 1.21569 0.98465 0.97515 0.99437 1.20287 0.87306 0.80860 0.80723 1.90692 1.43639 1.70548 1.35924 1.47748 1.23309 1.34104 1.27661 1.21625 0.91485 0.97389 0.90733 1.21862 0.97768 0.94451 1.02986 1.21612 0.96381 0.99959 0.97342 1.19947 0.90405 0.91983 0.88213 1.22762 0.91612 0.99058 0.87122 1.86887 1.35897 1.65687 1.45750 1.42419 1.11823 1.80033 1.00040 1.19522 0.95467 1.34610 0.83117 0.89107 1.24636 0.96036 1.03558 0.97405 1.69657 1.09354 1.54722 1.26086 0.86229 0.78480 0.77306 0.84610 1.22466 1.22485 1.20683 1.22062 0.86904 0.90172 1.02135 1.74093 1.03735 1.15211 1.19428 0.89457 0.87930 0.88191 0.78641 0.88976 0.88832 0.88513 0.89817 0.92257 0.90411 0.91604 0.90023 0.91617 0.92089 0.95898 0.94300 0.80218 0.78408 0.94231 0.93988 0.87819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.80 11.57 59.84 0.69 1.49 16 2 N -0.16 -2.07 4.35 -16.64 -0.07 -2.14 16 3 N -0.30 -3.85 12.05 30.67 0.37 -3.48 16 4 C -0.02 -0.30 12.15 -17.21 -0.21 -0.51 16 5 C 0.01 0.17 6.61 -82.25 -0.54 -0.37 16 6 C -0.02 -0.23 5.10 -27.88 -0.14 -0.37 16 7 C -0.13 -1.93 4.03 -27.88 -0.11 -2.04 16 8 C 0.52 9.94 7.70 -10.98 -0.08 9.85 16 9 O -0.53 -12.37 15.40 5.56 0.09 -12.28 16 10 N -0.60 -10.48 2.89 -172.79 -0.50 -10.98 16 11 C 0.11 1.50 6.34 -3.72 -0.02 1.48 16 12 C -0.13 -1.88 5.91 -26.62 -0.16 -2.03 16 13 C -0.11 -1.71 4.76 -26.69 -0.13 -1.84 16 14 C 0.19 3.56 0.68 -131.71 -0.09 3.47 16 15 C 0.08 1.32 6.08 37.16 0.23 1.55 16 16 O -0.54 -10.42 10.10 -35.23 -0.36 -10.77 16 17 N -0.70 -17.09 4.75 -47.13 -0.22 -17.31 16 18 C -0.20 -5.53 8.21 -15.06 -0.12 -5.65 16 19 H 0.09 2.65 5.27 -52.49 -0.28 2.37 16 20 C -0.02 -0.69 5.50 -17.43 -0.10 -0.79 16 21 N -0.95 -29.46 13.06 55.49 0.72 -28.74 16 22 Si 0.90 24.49 29.55 -169.99 -5.02 19.47 16 23 H -0.30 -7.96 7.11 56.52 0.40 -7.55 16 24 H -0.30 -8.20 7.11 56.52 0.40 -7.80 16 25 H -0.28 -7.68 7.11 56.52 0.40 -7.28 16 26 C 0.11 2.13 4.85 -3.73 -0.02 2.11 16 27 N -0.28 -4.17 12.05 33.71 0.41 -3.76 16 28 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.20 1.73 8.06 -52.49 -0.42 1.31 16 32 H 0.09 1.22 8.09 -51.93 -0.42 0.80 16 33 H 0.09 1.62 8.10 -51.93 -0.42 1.20 16 34 H 0.10 1.52 7.69 -51.93 -0.40 1.12 16 35 H 0.08 1.02 7.94 -51.93 -0.41 0.61 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.08 0.94 5.93 -51.93 -0.31 0.63 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.08 1.44 6.75 -51.93 -0.35 1.09 16 40 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.35 5.02 9.12 45.56 0.42 5.43 16 45 H 0.38 9.94 6.43 -40.82 -0.26 9.68 16 46 H 0.25 7.62 8.31 -40.82 -0.34 7.28 16 47 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 48 H 0.10 2.45 5.69 -51.93 -0.30 2.15 16 LS Contribution 383.82 15.07 5.78 5.78 Total: -1.00 -38.41 383.82 -6.13 -44.54 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: -6.52 Total: 13.32 kcal Atomic # 6 Polarization: 7.16 SS G_CDS: -0.81 Total: 6.35 kcal Atomic # 7 Polarization: -67.11 SS G_CDS: 0.70 Total: -66.41 kcal Atomic # 8 Polarization: -22.79 SS G_CDS: -0.27 Total: -23.06 kcal Atomic # 14 Polarization: 24.49 SS G_CDS: -5.02 Total: 19.47 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -38.41 -6.13 -44.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273911296.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.251 kcal (2) G-P(sol) polarization free energy of solvation -38.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds