Wall clock time and date at job start Tue Mar 31 2020 21:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 N 1.28609 * 124.61785 * 2 1 4 4 C 1.31377 * 108.71787 * 179.97438 * 3 2 1 5 5 C 1.39677 * 105.90073 * 0.02562 * 4 3 2 6 6 C 1.50701 * 127.04930 * 179.97438 * 5 4 3 7 7 C 1.52998 * 109.47345 * 124.99777 * 6 5 4 8 8 C 1.50706 * 109.47038 * 180.02562 * 7 6 5 9 9 O 1.21280 * 119.99991 * 359.97438 * 8 7 6 10 10 N 1.34775 * 119.99528 * 179.97438 * 8 7 6 11 11 C 1.46922 * 120.63610 * 359.97438 * 10 8 7 12 12 C 1.53187 * 108.77857 * 126.41416 * 11 10 8 13 13 C 1.53036 * 109.31230 * 54.63534 * 12 11 10 14 14 C 1.53043 * 109.54027 * 298.63421 * 13 12 11 15 15 C 1.52999 * 109.52611 * 181.33411 * 14 13 12 16 16 O 1.42900 * 109.46718 * 180.02562 * 15 14 13 17 17 N 1.46506 * 109.49580 * 301.41786 * 14 13 12 18 18 C 1.36938 * 119.99589 * 179.83731 * 17 14 13 19 19 H 1.07999 * 120.00325 * 359.97438 * 18 17 14 20 20 C 1.38815 * 119.99817 * 180.02562 * 18 17 14 21 21 N 1.31621 * 119.99673 * 359.71804 * 20 18 17 22 22 Si 1.86795 * 120.00115 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47274 * 89.99913 * 22 20 18 24 24 H 1.48505 * 109.47015 * 209.99478 * 22 20 18 25 25 H 1.48498 * 109.47362 * 329.99904 * 22 20 18 26 26 C 1.46931 * 120.62556 * 179.97438 * 10 8 7 27 27 N 1.28606 * 124.62254 * 180.24846 * 2 1 3 28 28 H 1.09000 * 109.47146 * 90.02728 * 1 2 3 29 29 H 1.09004 * 109.47259 * 210.02166 * 1 2 3 30 30 H 1.09004 * 109.47374 * 330.02496 * 1 2 3 31 31 H 1.07991 * 127.05099 * 179.97438 * 4 3 2 32 32 H 1.09000 * 109.47425 * 4.98836 * 6 5 4 33 33 H 1.09002 * 109.47129 * 244.99506 * 6 5 4 34 34 H 1.08993 * 109.47444 * 59.99483 * 7 6 5 35 35 H 1.08998 * 109.46525 * 299.99496 * 7 6 5 36 36 H 1.09002 * 109.58260 * 246.20396 * 11 10 8 37 37 H 1.09002 * 109.58609 * 6.62139 * 11 10 8 38 38 H 1.09002 * 109.50104 * 174.58834 * 12 11 10 39 39 H 1.09003 * 109.49287 * 294.65113 * 12 11 10 40 40 H 1.09005 * 109.46108 * 178.62064 * 13 12 11 41 41 H 1.08998 * 109.46508 * 58.65844 * 13 12 11 42 42 H 1.09001 * 109.46778 * 300.08176 * 15 14 13 43 43 H 1.09001 * 109.46916 * 60.08512 * 15 14 13 44 44 H 0.96704 * 113.99357 * 180.02562 * 16 15 14 45 45 H 0.96999 * 120.00080 * 359.83221 * 17 14 13 46 46 H 0.97000 * 120.00043 * 180.02562 * 21 20 18 47 47 H 1.08998 * 109.58577 * 113.80215 * 26 10 8 48 48 H 1.09002 * 109.58928 * 353.37351 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.1955 1.0584 0.0000 4 6 3.4590 0.6985 0.0006 5 6 3.4591 -0.6983 0.0003 6 6 4.6619 -1.6062 0.0002 7 6 4.5704 -2.5741 1.1817 8 6 5.7736 -3.4816 1.1818 9 8 6.6205 -3.3660 0.3214 10 7 5.9083 -4.4216 2.1382 11 6 4.8911 -4.5735 3.1874 12 6 4.4266 -6.0329 3.2164 13 6 5.6421 -6.9477 3.3824 14 6 6.5866 -6.7651 2.1921 15 6 7.7854 -7.7039 2.3418 16 8 8.6667 -7.5319 1.2302 17 7 5.8741 -7.0758 0.9503 18 6 6.5208 -6.9786 -0.2528 19 1 7.5560 -6.6724 -0.2863 20 6 5.8456 -7.2725 -1.4295 21 7 4.5854 -7.6500 -1.3883 22 14 6.7275 -7.1392 -3.0707 23 1 7.3598 -8.4418 -3.4002 24 1 5.7503 -6.7814 -4.1301 25 1 7.7735 -6.0885 -2.9867 26 6 7.0754 -5.3142 2.1513 27 7 2.1956 -1.0583 -0.0046 28 1 -0.3633 -0.0005 -1.0277 29 1 -0.3634 -0.8898 0.5142 30 1 -0.3634 0.8902 0.5135 31 1 4.3210 1.3491 0.0003 32 1 5.5687 -1.0081 0.0897 33 1 4.6902 -2.1717 -0.9313 34 1 3.6637 -3.1722 1.0921 35 1 4.5422 -2.0086 2.1131 36 1 5.3201 -4.3072 4.1534 37 1 4.0429 -3.9241 2.9706 38 1 3.7431 -6.1807 4.0525 39 1 3.9163 -6.2708 2.2830 40 1 5.3120 -7.9856 3.4279 41 1 6.1655 -6.6926 4.3038 42 1 8.3151 -7.4723 3.2658 43 1 7.4368 -8.7363 2.3717 44 1 9.4506 -8.0975 1.2586 45 1 4.9443 -7.3505 0.9804 46 1 4.1136 -7.8557 -2.2105 47 1 7.6828 -5.1085 3.0327 48 1 7.6684 -5.1537 1.2509 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273911296.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:41 Heat of formation + Delta-G solvation = 15.439600 kcal Electronic energy + Delta-G solvation = -30770.288974 eV Core-core repulsion = 26669.486024 eV Total energy + Delta-G solvation = -4100.802950 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -44.51529 -41.20722 -39.28578 -37.11345 -35.84544 -35.51432 -33.99376 -33.77687 -32.66055 -32.40008 -30.42892 -28.83060 -27.03993 -26.45746 -25.54047 -24.93293 -23.27297 -22.89589 -21.71098 -20.48295 -19.59949 -19.11039 -18.35310 -17.86400 -17.77887 -17.71430 -17.04512 -16.56895 -16.31668 -15.83932 -15.66806 -15.57294 -15.25568 -14.85973 -14.66307 -14.56951 -14.26727 -14.15572 -13.79260 -13.60201 -13.49897 -13.46162 -13.18077 -12.99736 -12.88918 -12.68834 -12.60610 -12.50002 -12.06840 -11.99609 -11.84284 -11.77757 -11.71037 -11.37103 -11.26078 -11.24361 -10.87619 -10.56151 -10.53812 -10.05902 -9.42116 -8.76395 -7.79216 -4.99582 0.80581 1.40538 1.41335 1.43549 1.52739 1.52819 1.85159 2.32009 2.65742 3.14532 3.42346 3.62187 3.70973 3.83796 3.91573 4.03143 4.12207 4.14283 4.21218 4.27096 4.30843 4.34362 4.40607 4.46688 4.55383 4.57092 4.61659 4.65218 4.74098 4.80652 4.84875 4.87655 4.97613 5.05366 5.07758 5.08798 5.19761 5.25343 5.29396 5.50250 5.55836 5.78435 5.82668 5.94325 6.46477 6.68845 7.18161 7.33982 7.45545 7.54859 8.24904 8.47158 9.45307 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011442 B = 0.003685 C = 0.003221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2446.488348 B = 7596.879328 C = 8691.525431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.162 5.162 3 N -0.305 5.305 4 C -0.022 4.022 5 C -0.003 4.003 6 C -0.008 4.008 7 C -0.113 4.113 8 C 0.506 3.494 9 O -0.587 6.587 10 N -0.598 5.598 11 C 0.106 3.894 12 C -0.129 4.129 13 C -0.109 4.109 14 C 0.174 3.826 15 C 0.075 3.925 16 O -0.574 6.574 17 N -0.710 5.710 18 C -0.163 4.163 19 H 0.080 0.920 20 C -0.089 4.089 21 N -0.978 5.978 22 Si 0.945 3.055 23 H -0.290 1.290 24 H -0.306 1.306 25 H -0.288 1.288 26 C 0.117 3.883 27 N -0.308 5.308 28 H 0.099 0.901 29 H 0.113 0.887 30 H 0.124 0.876 31 H 0.226 0.774 32 H 0.104 0.896 33 H 0.055 0.945 34 H 0.088 0.912 35 H 0.120 0.880 36 H 0.100 0.900 37 H 0.092 0.908 38 H 0.105 0.895 39 H 0.037 0.963 40 H 0.064 0.936 41 H 0.102 0.898 42 H 0.067 0.933 43 H 0.034 0.966 44 H 0.375 0.625 45 H 0.370 0.630 46 H 0.239 0.761 47 H 0.076 0.924 48 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.728 12.861 16.090 21.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.064 5.064 3 N -0.147 5.147 4 C -0.203 4.203 5 C -0.165 4.165 6 C -0.048 4.048 7 C -0.154 4.154 8 C 0.296 3.704 9 O -0.468 6.468 10 N -0.329 5.329 11 C -0.016 4.016 12 C -0.168 4.168 13 C -0.147 4.147 14 C 0.083 3.917 15 C -0.005 4.005 16 O -0.379 6.379 17 N -0.349 5.349 18 C -0.296 4.296 19 H 0.098 0.902 20 C -0.279 4.279 21 N -0.633 5.633 22 Si 0.778 3.222 23 H -0.218 1.218 24 H -0.233 1.233 25 H -0.215 1.215 26 C -0.008 4.008 27 N -0.152 5.152 28 H 0.117 0.883 29 H 0.132 0.868 30 H 0.142 0.858 31 H 0.243 0.757 32 H 0.123 0.877 33 H 0.074 0.926 34 H 0.106 0.894 35 H 0.138 0.862 36 H 0.118 0.882 37 H 0.110 0.890 38 H 0.124 0.876 39 H 0.056 0.944 40 H 0.083 0.917 41 H 0.120 0.880 42 H 0.085 0.915 43 H 0.052 0.948 44 H 0.223 0.777 45 H 0.203 0.797 46 H 0.048 0.952 47 H 0.094 0.906 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.038 13.413 15.361 21.268 hybrid contribution 1.335 -0.959 -1.664 2.339 sum -4.703 12.454 13.696 19.100 Atomic orbital electron populations 1.22528 0.68063 1.07428 1.06212 1.48422 1.10143 0.98758 1.49108 1.73994 1.04350 1.16508 1.19823 1.25130 0.95124 0.94325 1.05726 1.23181 0.92214 0.94815 1.06246 1.19497 0.92466 0.94742 0.98058 1.21483 0.95788 0.96898 1.01206 1.21059 0.87737 0.81475 0.80162 1.90662 1.45765 1.72271 1.38070 1.47947 1.23728 1.33024 1.28176 1.21984 0.91202 0.97359 0.91019 1.21843 0.97903 0.94650 1.02361 1.21628 0.95977 1.00318 0.96753 1.20439 0.91683 0.92062 0.87546 1.22734 0.91257 0.98209 0.88315 1.86799 1.37299 1.66695 1.47150 1.42548 1.11506 1.79879 1.00996 1.19617 0.94791 1.30594 0.84614 0.90194 1.25154 0.96876 1.06083 0.99766 1.69767 1.10293 1.57601 1.25659 0.85500 0.77228 0.77110 0.82330 1.21783 1.23307 1.21457 1.21861 0.87450 0.90375 1.01106 1.74039 1.04412 1.16564 1.20163 0.88264 0.86801 0.85794 0.75729 0.87744 0.92627 0.89365 0.86179 0.88222 0.88959 0.87631 0.94388 0.91686 0.87990 0.91481 0.94791 0.77747 0.79675 0.95238 0.90565 0.93005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.22 11.57 127.77 1.48 2.70 16 2 N -0.16 -3.87 4.35 -206.56 -0.90 -4.76 16 3 N -0.30 -7.44 12.05 -56.87 -0.69 -8.12 16 4 C -0.02 -0.50 12.15 85.11 1.03 0.53 16 5 C 0.00 -0.07 6.61 42.98 0.28 0.21 16 6 C -0.01 -0.23 5.10 29.85 0.15 -0.08 16 7 C -0.11 -3.33 4.03 29.85 0.12 -3.21 16 8 C 0.51 19.48 7.70 87.66 0.67 20.15 16 9 O -0.59 -28.54 15.40 -3.03 -0.05 -28.58 16 10 N -0.60 -20.20 2.89 -818.97 -2.37 -22.57 16 11 C 0.11 2.48 6.34 86.36 0.55 3.03 16 12 C -0.13 -3.27 5.91 30.67 0.18 -3.09 16 13 C -0.11 -2.86 4.76 30.62 0.15 -2.72 16 14 C 0.17 6.30 0.68 3.67 0.00 6.30 16 15 C 0.07 2.46 6.08 71.98 0.44 2.89 16 16 O -0.57 -21.77 10.10 -148.98 -1.51 -23.27 16 17 N -0.71 -34.99 4.75 -303.03 -1.44 -36.43 16 18 C -0.16 -9.47 8.21 84.03 0.69 -8.78 16 19 H 0.08 4.82 5.27 -2.91 -0.02 4.80 16 20 C -0.09 -5.53 5.50 84.86 0.47 -5.07 16 21 N -0.98 -63.20 13.06 21.65 0.28 -62.92 16 22 Si 0.94 52.39 29.55 68.60 2.03 54.42 16 23 H -0.29 -15.53 7.11 99.48 0.71 -14.82 16 24 H -0.31 -17.15 7.11 99.48 0.71 -16.44 16 25 H -0.29 -16.08 7.11 99.48 0.71 -15.37 16 26 C 0.12 4.31 4.85 86.35 0.42 4.73 16 27 N -0.31 -8.94 12.05 -47.25 -0.57 -9.51 16 28 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.12 0.96 8.14 -2.38 -0.02 0.94 16 31 H 0.23 3.48 8.06 -2.91 -0.02 3.45 16 32 H 0.10 2.80 8.09 -2.39 -0.02 2.78 16 33 H 0.06 2.07 8.10 -2.39 -0.02 2.05 16 34 H 0.09 2.77 7.69 -2.39 -0.02 2.75 16 35 H 0.12 2.62 7.94 -2.39 -0.02 2.60 16 36 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.09 1.91 5.93 -2.39 -0.01 1.90 16 38 H 0.11 1.87 8.14 -2.39 -0.02 1.86 16 39 H 0.04 1.31 6.75 -2.39 -0.02 1.29 16 40 H 0.06 1.74 8.14 -2.38 -0.02 1.73 16 41 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 42 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 43 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.38 10.27 9.12 -74.05 -0.68 9.59 16 45 H 0.37 19.78 6.43 -92.71 -0.60 19.18 16 46 H 0.24 15.31 8.31 -92.71 -0.77 14.54 16 47 H 0.08 2.27 8.14 -2.39 -0.02 2.26 16 48 H 0.05 2.48 5.69 -2.39 -0.01 2.47 16 Total: -1.00 -89.34 383.82 1.16 -88.18 By element: Atomic # 1 Polarization: 36.25 SS G_CDS: -0.27 Total: 35.97 kcal Atomic # 6 Polarization: 10.96 SS G_CDS: 6.63 Total: 17.59 kcal Atomic # 7 Polarization: -138.64 SS G_CDS: -5.68 Total: -144.32 kcal Atomic # 8 Polarization: -50.30 SS G_CDS: -1.55 Total: -51.85 kcal Atomic # 14 Polarization: 52.39 SS G_CDS: 2.03 Total: 54.42 kcal Total: -89.34 1.16 -88.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273911296.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.621 kcal (2) G-P(sol) polarization free energy of solvation -89.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds