Wall clock time and date at job start Tue Mar 31 2020 21:02:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34583 * 125.75187 * 2 1 4 4 N 1.30866 * 107.62907 * 179.74058 * 3 2 1 5 5 C 1.34552 * 107.26930 * 359.97438 * 4 3 2 6 6 C 1.47868 * 126.04621 * 180.02562 * 5 4 3 7 7 O 1.21558 * 119.99438 * 187.79998 * 6 5 4 8 8 N 1.34770 * 120.00288 * 7.80186 * 6 5 4 9 9 C 1.46929 * 120.63095 * 186.96071 * 8 6 5 10 10 C 1.52760 * 109.00754 * 233.58435 * 9 8 6 11 11 C 1.53036 * 109.38609 * 305.59096 * 10 9 8 12 12 O 1.42899 * 109.44908 * 181.25425 * 11 10 9 13 13 C 1.42908 * 113.99985 * 89.93917 * 12 11 10 14 14 C 1.52997 * 109.46881 * 180.02562 * 13 12 11 15 15 C 1.53001 * 109.46936 * 179.97438 * 14 13 12 16 16 N 1.46499 * 109.47166 * 179.97438 * 15 14 13 17 17 C 1.36939 * 120.00039 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99876 * 359.97438 * 17 16 15 19 19 C 1.38813 * 119.99999 * 180.02562 * 17 16 15 20 20 N 1.31615 * 120.00127 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99856 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47129 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47055 * 119.99720 * 21 19 17 24 24 H 1.48501 * 109.47112 * 239.99982 * 21 19 17 25 25 C 1.53033 * 109.54014 * 61.23958 * 11 10 9 26 26 C 1.46927 * 120.63177 * 7.24517 * 8 6 5 27 27 N 1.28846 * 125.74712 * 179.69572 * 2 1 3 28 28 H 1.08998 * 109.46900 * 89.99680 * 1 2 3 29 29 H 1.09006 * 109.46928 * 210.00002 * 1 2 3 30 30 H 1.09000 * 109.46630 * 329.99777 * 1 2 3 31 31 H 1.08006 * 126.18472 * 359.70513 * 3 2 1 32 32 H 1.09001 * 109.58523 * 353.42312 * 9 8 6 33 33 H 1.09002 * 109.58163 * 113.84299 * 9 8 6 34 34 H 1.09004 * 109.56367 * 185.55507 * 10 9 8 35 35 H 1.08999 * 109.35733 * 65.50297 * 10 9 8 36 36 H 1.09005 * 109.45912 * 301.22057 * 11 10 9 37 37 H 1.09003 * 109.46514 * 299.99655 * 13 12 11 38 38 H 1.09002 * 109.47126 * 59.99724 * 13 12 11 39 39 H 1.09003 * 109.47166 * 299.99135 * 14 13 12 40 40 H 1.08994 * 109.47300 * 60.00064 * 14 13 12 41 41 H 1.09000 * 109.47410 * 300.00058 * 15 14 13 42 42 H 1.09002 * 109.46973 * 59.99664 * 15 14 13 43 43 H 0.96998 * 120.00091 * 0.02562 * 16 15 14 44 44 H 0.96995 * 119.99876 * 180.02562 * 20 19 17 45 45 H 1.08997 * 109.50088 * 178.68601 * 25 11 10 46 46 H 1.09004 * 109.52510 * 58.60275 * 25 11 10 47 47 H 1.08994 * 109.58603 * 246.15779 * 26 8 6 48 48 H 1.08999 * 109.58437 * 6.43427 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2513 1.0922 0.0000 4 7 3.4951 0.6852 0.0056 5 6 3.4750 -0.6602 0.0097 6 6 4.6575 -1.5480 0.0171 7 8 4.5177 -2.7474 -0.1226 8 7 5.8900 -1.0275 0.1789 9 6 7.0839 -1.8721 0.0373 10 6 7.9440 -1.7322 1.2919 11 6 8.2462 -0.2523 1.5382 12 8 9.0751 -0.1220 2.6949 13 6 10.4757 -0.1625 2.4140 14 6 11.2618 -0.0155 3.7183 15 6 12.7614 -0.0594 3.4176 16 7 13.5142 0.0820 4.6664 17 6 14.8834 0.0720 4.6453 18 1 15.4082 -0.0406 3.7081 19 6 15.5967 0.2055 5.8286 20 7 14.9571 0.3411 6.9709 21 14 17.4645 0.1911 5.8000 22 1 17.9368 0.0250 4.4019 23 1 17.9778 1.4725 6.3474 24 1 17.9636 -0.9362 6.6278 25 6 6.9366 0.5073 1.7612 26 6 6.0652 0.3941 0.5063 27 7 2.2177 -1.0457 0.0056 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3632 0.8900 0.5139 31 1 1.9165 2.1190 -0.0045 32 1 6.7830 -2.9128 -0.0837 33 1 7.6569 -1.5518 -0.8329 34 1 8.8786 -2.2767 1.1564 35 1 7.4051 -2.1406 2.1468 36 1 8.7633 0.1617 0.6725 37 1 10.7248 -1.1146 1.9454 38 1 10.7346 0.6534 1.7392 39 1 11.0128 0.9365 4.1873 40 1 11.0028 -0.8316 4.3926 41 1 13.0102 -1.0115 2.9487 42 1 13.0207 0.7565 2.7429 43 1 13.0428 0.1827 5.5081 44 1 15.4556 0.4348 7.7977 45 1 7.1540 1.5568 1.9596 46 1 6.4069 0.0783 2.6118 47 1 6.5535 0.9030 -0.3247 48 1 5.0922 0.8488 0.6923 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001276159419.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:50 Heat of formation + Delta-G solvation = 35.652289 kcal Electronic energy + Delta-G solvation = -28243.873099 eV Core-core repulsion = 24143.946636 eV Total energy + Delta-G solvation = -4099.926462 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.99785 -40.36478 -38.58744 -36.71206 -35.27935 -35.02153 -32.71375 -32.29125 -31.76055 -31.41377 -29.51486 -28.45265 -25.84784 -24.97772 -23.82325 -23.56791 -22.59565 -22.40368 -21.24634 -20.76184 -19.76295 -18.07506 -17.38646 -17.17255 -16.97678 -16.58966 -16.46152 -15.73219 -15.45993 -15.37407 -14.76721 -14.49902 -14.42008 -14.03472 -14.01849 -13.94549 -13.58682 -13.27227 -13.24468 -13.00299 -12.71179 -12.64531 -12.25423 -12.09015 -11.50505 -11.39357 -11.21439 -11.00921 -10.98907 -10.83654 -10.70306 -10.64285 -10.57765 -10.46979 -10.18489 -10.07558 -9.98167 -9.67860 -9.36435 -8.99535 -8.84433 -6.88737 -5.72868 -3.01834 0.92134 1.54536 1.63169 2.50995 2.94429 3.46121 3.48202 3.51407 3.53903 3.69730 3.77816 4.10028 4.33245 4.43133 4.56750 4.63679 4.64769 4.67273 4.82879 4.93563 5.05814 5.19332 5.26154 5.32006 5.33931 5.43354 5.49792 5.59291 5.60501 5.65804 5.68075 5.73367 5.80348 5.93858 6.01907 6.04269 6.10656 6.16300 6.32684 6.35312 6.41991 6.88183 6.91989 6.95007 7.35863 7.42624 7.73558 7.79735 8.45976 9.56957 10.15362 10.50209 11.50221 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.035510 B = 0.001517 C = 0.001486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.313197 B =18451.756329 C =18836.067790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.304 5.304 3 C 0.193 3.807 4 N -0.483 5.483 5 C 0.148 3.852 6 C 0.616 3.384 7 O -0.520 6.520 8 N -0.592 5.592 9 C 0.116 3.884 10 C -0.157 4.157 11 C 0.089 3.911 12 O -0.380 6.380 13 C 0.068 3.932 14 C -0.124 4.124 15 C 0.156 3.844 16 N -0.733 5.733 17 C -0.240 4.240 18 H 0.071 0.929 19 C -0.015 4.015 20 N -0.933 5.933 21 Si 0.908 3.092 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.291 1.291 25 C -0.131 4.131 26 C 0.084 3.916 27 N -0.251 5.251 28 H 0.092 0.908 29 H 0.101 0.899 30 H 0.104 0.896 31 H 0.229 0.771 32 H 0.097 0.903 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.062 0.938 37 H 0.047 0.953 38 H 0.048 0.952 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.019 0.981 42 H 0.019 0.981 43 H 0.385 0.615 44 H 0.255 0.745 45 H 0.084 0.916 46 H 0.072 0.928 47 H 0.070 0.930 48 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.932 3.279 -18.563 38.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.099 5.099 3 C -0.102 4.102 4 N -0.209 5.209 5 C -0.132 4.132 6 C 0.400 3.600 7 O -0.393 6.393 8 N -0.326 5.326 9 C -0.006 4.006 10 C -0.196 4.196 11 C 0.031 3.969 12 O -0.300 6.300 13 C -0.009 4.009 14 C -0.162 4.162 15 C 0.029 3.971 16 N -0.378 5.378 17 C -0.371 4.371 18 H 0.089 0.911 19 C -0.211 4.211 20 N -0.582 5.582 21 Si 0.739 3.261 22 H -0.205 1.205 23 H -0.219 1.219 24 H -0.219 1.219 25 C -0.169 4.169 26 C -0.039 4.039 27 N -0.090 5.090 28 H 0.110 0.890 29 H 0.120 0.880 30 H 0.122 0.878 31 H 0.245 0.755 32 H 0.116 0.884 33 H 0.092 0.908 34 H 0.100 0.900 35 H 0.095 0.905 36 H 0.080 0.920 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.037 0.963 42 H 0.037 0.963 43 H 0.218 0.782 44 H 0.064 0.936 45 H 0.103 0.897 46 H 0.091 0.909 47 H 0.088 0.912 48 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -33.820 2.148 -18.532 38.625 hybrid contribution 0.787 0.391 0.118 0.886 sum -33.034 2.539 -18.414 37.905 Atomic orbital electron populations 1.22306 0.71957 1.06219 1.05181 1.47397 1.09476 1.03799 1.49208 1.26679 0.86011 0.96121 1.01384 1.71075 1.19539 1.09322 1.20923 1.23697 0.92108 0.89376 1.07979 1.16315 0.80856 0.85531 0.77312 1.90830 1.84974 1.13870 1.49632 1.47824 1.04628 1.11427 1.68678 1.21590 0.84629 0.96671 0.97704 1.22374 1.00647 0.98029 0.98520 1.22033 0.91577 0.94265 0.89006 1.87947 1.16656 1.94040 1.31308 1.22526 0.80224 0.99815 0.98344 1.21665 0.95247 1.03183 0.96136 1.20518 0.88356 0.97714 0.90545 1.42351 1.03412 1.88325 1.03665 1.19294 0.82613 1.41892 0.93295 0.91082 1.24758 0.97999 1.02960 0.95373 1.69677 1.34125 1.57029 0.97346 0.86099 0.85595 0.77177 0.77223 1.20541 1.21855 1.21857 1.22005 0.94757 1.01571 0.98554 1.22662 1.04559 0.80161 0.96475 1.74368 1.02732 1.13319 1.18567 0.88957 0.88019 0.87758 0.75520 0.88427 0.90846 0.89988 0.90479 0.92043 0.93455 0.93388 0.91212 0.91224 0.96334 0.96336 0.78188 0.93559 0.89725 0.90877 0.91209 0.84276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.03 11.38 59.85 0.68 0.71 16 2 N -0.30 -1.69 3.72 -69.39 -0.26 -1.94 16 3 C 0.19 0.89 12.62 -90.49 -1.14 -0.26 16 4 N -0.48 -4.01 7.88 -12.36 -0.10 -4.11 16 5 C 0.15 1.64 7.64 -156.35 -1.19 0.45 16 6 C 0.62 7.84 7.69 -12.32 -0.09 7.75 16 7 O -0.52 -8.17 16.51 5.32 0.09 -8.08 16 8 N -0.59 -6.28 2.98 -174.13 -0.52 -6.80 16 9 C 0.12 1.13 6.42 -3.93 -0.03 1.10 16 10 C -0.16 -1.63 5.68 -26.84 -0.15 -1.79 16 11 C 0.09 0.98 2.57 -26.70 -0.07 0.91 16 12 O -0.38 -5.39 9.99 -35.23 -0.35 -5.74 16 13 C 0.07 0.96 5.75 37.16 0.21 1.18 16 14 C -0.12 -2.18 5.70 -26.73 -0.15 -2.33 16 15 C 0.16 3.27 6.26 -4.04 -0.03 3.25 16 16 N -0.73 -19.46 5.60 -59.91 -0.34 -19.80 16 17 C -0.24 -6.94 9.99 -15.06 -0.15 -7.09 16 18 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 19 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 20 N -0.93 -28.96 13.06 55.49 0.72 -28.23 16 21 Si 0.91 22.82 29.55 -169.99 -5.02 17.79 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 24 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 25 C -0.13 -1.27 5.73 -26.61 -0.15 -1.43 16 26 C 0.08 0.74 6.09 -3.71 -0.02 0.72 16 27 N -0.25 -2.60 12.09 32.07 0.39 -2.22 16 28 H 0.09 -0.09 8.14 -51.93 -0.42 -0.51 16 29 H 0.10 0.06 8.14 -51.93 -0.42 -0.36 16 30 H 0.10 -0.30 8.14 -51.93 -0.42 -0.72 16 31 H 0.23 -0.16 8.06 -52.48 -0.42 -0.58 16 32 H 0.10 1.03 7.00 -51.93 -0.36 0.67 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.08 0.81 7.84 -51.93 -0.41 0.40 16 35 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.06 0.61 7.79 -51.93 -0.40 0.20 16 37 H 0.05 0.63 7.84 -51.93 -0.41 0.22 16 38 H 0.05 0.63 8.08 -51.93 -0.42 0.21 16 39 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 41 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 43 H 0.38 10.71 7.67 -40.82 -0.31 10.40 16 44 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 45 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 46 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 47 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 48 H 0.14 1.23 4.15 -59.54 -0.25 0.98 16 LS Contribution 393.97 15.07 5.94 5.94 Total: -1.00 -38.55 393.97 -9.43 -47.98 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -7.60 Total: 2.59 kcal Atomic # 6 Polarization: 5.00 SS G_CDS: -2.38 Total: 2.62 kcal Atomic # 7 Polarization: -63.00 SS G_CDS: -0.10 Total: -63.10 kcal Atomic # 8 Polarization: -13.56 SS G_CDS: -0.26 Total: -13.83 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -5.02 Total: 17.79 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -38.55 -9.43 -47.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276159419.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.633 kcal (2) G-P(sol) polarization free energy of solvation -38.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds