Wall clock time and date at job start Tue Mar 31 2020 21:02:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34583 * 125.75187 * 2 1 4 4 N 1.30866 * 107.62907 * 179.74058 * 3 2 1 5 5 C 1.34552 * 107.26930 * 359.97438 * 4 3 2 6 6 C 1.47868 * 126.04621 * 180.02562 * 5 4 3 7 7 O 1.21558 * 119.99438 * 187.79998 * 6 5 4 8 8 N 1.34770 * 120.00288 * 7.80186 * 6 5 4 9 9 C 1.46929 * 120.63095 * 186.96071 * 8 6 5 10 10 C 1.52760 * 109.00754 * 233.58435 * 9 8 6 11 11 C 1.53036 * 109.38609 * 305.59096 * 10 9 8 12 12 O 1.42899 * 109.44908 * 181.25425 * 11 10 9 13 13 C 1.42908 * 113.99985 * 89.93917 * 12 11 10 14 14 C 1.52997 * 109.46881 * 180.02562 * 13 12 11 15 15 C 1.53001 * 109.46936 * 179.97438 * 14 13 12 16 16 N 1.46499 * 109.47166 * 179.97438 * 15 14 13 17 17 C 1.36939 * 120.00039 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99876 * 359.97438 * 17 16 15 19 19 C 1.38813 * 119.99999 * 180.02562 * 17 16 15 20 20 N 1.31615 * 120.00127 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99856 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47129 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47055 * 119.99720 * 21 19 17 24 24 H 1.48501 * 109.47112 * 239.99982 * 21 19 17 25 25 C 1.53033 * 109.54014 * 61.23958 * 11 10 9 26 26 C 1.46927 * 120.63177 * 7.24517 * 8 6 5 27 27 N 1.28846 * 125.74712 * 179.69572 * 2 1 3 28 28 H 1.08998 * 109.46900 * 89.99680 * 1 2 3 29 29 H 1.09006 * 109.46928 * 210.00002 * 1 2 3 30 30 H 1.09000 * 109.46630 * 329.99777 * 1 2 3 31 31 H 1.08006 * 126.18472 * 359.70513 * 3 2 1 32 32 H 1.09001 * 109.58523 * 353.42312 * 9 8 6 33 33 H 1.09002 * 109.58163 * 113.84299 * 9 8 6 34 34 H 1.09004 * 109.56367 * 185.55507 * 10 9 8 35 35 H 1.08999 * 109.35733 * 65.50297 * 10 9 8 36 36 H 1.09005 * 109.45912 * 301.22057 * 11 10 9 37 37 H 1.09003 * 109.46514 * 299.99655 * 13 12 11 38 38 H 1.09002 * 109.47126 * 59.99724 * 13 12 11 39 39 H 1.09003 * 109.47166 * 299.99135 * 14 13 12 40 40 H 1.08994 * 109.47300 * 60.00064 * 14 13 12 41 41 H 1.09000 * 109.47410 * 300.00058 * 15 14 13 42 42 H 1.09002 * 109.46973 * 59.99664 * 15 14 13 43 43 H 0.96998 * 120.00091 * 0.02562 * 16 15 14 44 44 H 0.96995 * 119.99876 * 180.02562 * 20 19 17 45 45 H 1.08997 * 109.50088 * 178.68601 * 25 11 10 46 46 H 1.09004 * 109.52510 * 58.60275 * 25 11 10 47 47 H 1.08994 * 109.58603 * 246.15779 * 26 8 6 48 48 H 1.08999 * 109.58437 * 6.43427 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2513 1.0922 0.0000 4 7 3.4951 0.6852 0.0056 5 6 3.4750 -0.6602 0.0097 6 6 4.6575 -1.5480 0.0171 7 8 4.5177 -2.7474 -0.1226 8 7 5.8900 -1.0275 0.1789 9 6 7.0839 -1.8721 0.0373 10 6 7.9440 -1.7322 1.2919 11 6 8.2462 -0.2523 1.5382 12 8 9.0751 -0.1220 2.6949 13 6 10.4757 -0.1625 2.4140 14 6 11.2618 -0.0155 3.7183 15 6 12.7614 -0.0594 3.4176 16 7 13.5142 0.0820 4.6664 17 6 14.8834 0.0720 4.6453 18 1 15.4082 -0.0406 3.7081 19 6 15.5967 0.2055 5.8286 20 7 14.9571 0.3411 6.9709 21 14 17.4645 0.1911 5.8000 22 1 17.9368 0.0250 4.4019 23 1 17.9778 1.4725 6.3474 24 1 17.9636 -0.9362 6.6278 25 6 6.9366 0.5073 1.7612 26 6 6.0652 0.3941 0.5063 27 7 2.2177 -1.0457 0.0056 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3632 0.8900 0.5139 31 1 1.9165 2.1190 -0.0045 32 1 6.7830 -2.9128 -0.0837 33 1 7.6569 -1.5518 -0.8329 34 1 8.8786 -2.2767 1.1564 35 1 7.4051 -2.1406 2.1468 36 1 8.7633 0.1617 0.6725 37 1 10.7248 -1.1146 1.9454 38 1 10.7346 0.6534 1.7392 39 1 11.0128 0.9365 4.1873 40 1 11.0028 -0.8316 4.3926 41 1 13.0102 -1.0115 2.9487 42 1 13.0207 0.7565 2.7429 43 1 13.0428 0.1827 5.5081 44 1 15.4556 0.4348 7.7977 45 1 7.1540 1.5568 1.9596 46 1 6.4069 0.0783 2.6118 47 1 6.5535 0.9030 -0.3247 48 1 5.0922 0.8488 0.6923 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276159419.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:49 Heat of formation + Delta-G solvation = 9.406314 kcal Electronic energy + Delta-G solvation = -28245.011210 eV Core-core repulsion = 24143.946636 eV Total energy + Delta-G solvation = -4101.064573 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -44.50785 -41.22599 -39.59051 -37.78108 -36.82704 -35.65471 -34.28685 -32.99415 -32.82202 -32.26082 -31.24523 -28.82873 -27.09461 -26.19262 -24.79387 -24.23211 -24.02056 -23.12531 -22.42840 -21.86814 -20.51489 -19.15048 -18.70432 -18.00732 -17.80310 -17.45616 -17.22842 -16.84161 -16.58654 -16.25168 -15.94112 -15.68061 -15.44734 -15.26090 -14.98425 -14.95141 -14.62882 -14.31823 -13.99804 -13.93435 -13.72643 -13.44594 -13.28183 -12.98340 -12.87684 -12.71153 -12.44928 -12.39396 -12.26341 -12.16665 -12.01997 -11.78878 -11.69381 -11.61698 -11.55578 -11.48843 -10.95542 -10.88655 -10.61497 -10.34617 -9.82549 -9.02502 -7.95924 -5.26141 0.25441 1.06778 1.25564 1.48012 1.49590 1.59867 1.87134 2.14111 2.51134 2.66254 2.96481 3.37973 3.39091 3.70716 3.81628 3.86579 3.95050 4.02368 4.10120 4.16230 4.29202 4.32190 4.33319 4.39092 4.40430 4.47157 4.60764 4.65564 4.70636 4.71813 4.74100 4.78198 4.81350 4.85845 4.91783 5.01791 5.12306 5.24035 5.33467 5.33665 5.35331 5.45747 5.49212 5.78847 6.13062 6.25716 6.35171 6.76218 7.05368 7.31895 8.07106 8.30353 9.28218 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.035510 B = 0.001517 C = 0.001486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.313197 B =18451.756329 C =18836.067790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.299 5.299 3 C 0.209 3.791 4 N -0.500 5.500 5 C 0.120 3.880 6 C 0.608 3.392 7 O -0.566 6.566 8 N -0.589 5.589 9 C 0.116 3.884 10 C -0.151 4.151 11 C 0.086 3.914 12 O -0.400 6.400 13 C 0.076 3.924 14 C -0.113 4.113 15 C 0.155 3.845 16 N -0.750 5.750 17 C -0.249 4.249 18 H 0.079 0.921 19 C -0.078 4.078 20 N -0.971 5.971 21 Si 0.978 3.022 22 H -0.263 1.263 23 H -0.291 1.291 24 H -0.293 1.293 25 C -0.125 4.125 26 C 0.088 3.912 27 N -0.287 5.287 28 H 0.107 0.893 29 H 0.094 0.906 30 H 0.145 0.855 31 H 0.283 0.717 32 H 0.084 0.916 33 H 0.098 0.902 34 H 0.089 0.911 35 H 0.054 0.946 36 H 0.082 0.918 37 H 0.060 0.940 38 H 0.066 0.934 39 H 0.060 0.940 40 H 0.055 0.945 41 H 0.026 0.974 42 H 0.028 0.972 43 H 0.373 0.627 44 H 0.252 0.748 45 H 0.096 0.904 46 H 0.054 0.946 47 H 0.088 0.912 48 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.649 5.239 -20.410 40.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.094 5.094 3 C -0.084 4.084 4 N -0.227 5.227 5 C -0.158 4.158 6 C 0.393 3.607 7 O -0.443 6.443 8 N -0.321 5.321 9 C -0.005 4.005 10 C -0.189 4.189 11 C 0.028 3.972 12 O -0.320 6.320 13 C -0.001 4.001 14 C -0.151 4.151 15 C 0.029 3.971 16 N -0.393 5.393 17 C -0.381 4.381 18 H 0.097 0.903 19 C -0.270 4.270 20 N -0.622 5.622 21 Si 0.807 3.193 22 H -0.188 1.188 23 H -0.219 1.219 24 H -0.220 1.220 25 C -0.163 4.163 26 C -0.033 4.033 27 N -0.128 5.128 28 H 0.126 0.874 29 H 0.113 0.887 30 H 0.163 0.837 31 H 0.298 0.702 32 H 0.102 0.898 33 H 0.116 0.884 34 H 0.107 0.893 35 H 0.073 0.927 36 H 0.100 0.900 37 H 0.078 0.922 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.074 0.926 41 H 0.044 0.956 42 H 0.046 0.954 43 H 0.204 0.796 44 H 0.061 0.939 45 H 0.114 0.886 46 H 0.073 0.927 47 H 0.106 0.894 48 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -34.561 4.133 -20.425 40.357 hybrid contribution 0.832 -0.162 0.654 1.071 sum -33.729 3.971 -19.771 39.298 Atomic orbital electron populations 1.22782 0.69094 1.07912 1.06741 1.47786 1.10925 1.02999 1.47694 1.27674 0.84731 0.97660 0.98359 1.70956 1.21844 1.07843 1.22064 1.23398 0.91775 0.90372 1.10287 1.16697 0.81933 0.85359 0.76703 1.90782 1.85784 1.15744 1.51990 1.47954 1.04293 1.12208 1.67686 1.21629 0.84487 0.96188 0.98225 1.22303 1.00729 0.97969 0.97943 1.22237 0.91685 0.94572 0.88697 1.87917 1.16675 1.94225 1.33181 1.22369 0.80164 1.01208 0.96330 1.21478 0.93658 1.02149 0.97852 1.20672 0.89860 0.98078 0.88509 1.42615 1.03218 1.88403 1.05059 1.19735 0.83964 1.40734 0.93637 0.90261 1.25654 1.02880 1.03388 0.95070 1.69841 1.35871 1.58622 0.97880 0.85002 0.79741 0.76724 0.77846 1.18767 1.21852 1.22003 1.21973 0.94106 1.01878 0.98362 1.22758 1.04833 0.79182 0.96530 1.74274 1.03137 1.15880 1.19534 0.87417 0.88717 0.83732 0.70215 0.89785 0.88430 0.89284 0.92673 0.89959 0.92212 0.91606 0.92119 0.92571 0.95649 0.95357 0.79555 0.93943 0.88588 0.92723 0.89354 0.83880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 -0.13 11.38 127.77 1.45 1.32 16 2 N -0.30 -2.80 3.72 -373.45 -1.39 -4.19 16 3 C 0.21 1.33 12.62 180.30 2.27 3.60 16 4 N -0.50 -7.62 7.88 -193.03 -1.52 -9.14 16 5 C 0.12 2.70 7.64 137.12 1.05 3.75 16 6 C 0.61 16.20 7.69 86.79 0.67 16.87 16 7 O -0.57 -19.09 16.51 -3.90 -0.06 -19.15 16 8 N -0.59 -12.51 2.98 -823.12 -2.45 -14.96 16 9 C 0.12 2.24 6.42 86.22 0.55 2.80 16 10 C -0.15 -3.08 5.68 30.53 0.17 -2.91 16 11 C 0.09 1.74 2.57 30.62 0.08 1.82 16 12 O -0.40 -10.85 9.99 -148.98 -1.49 -12.34 16 13 C 0.08 2.01 5.75 71.98 0.41 2.43 16 14 C -0.11 -3.91 5.70 30.59 0.17 -3.73 16 15 C 0.16 6.35 6.26 86.38 0.54 6.89 16 16 N -0.75 -39.93 5.60 -343.44 -1.92 -41.86 16 17 C -0.25 -14.33 9.99 84.03 0.84 -13.49 16 18 H 0.08 4.33 7.83 -2.91 -0.02 4.31 16 19 C -0.08 -4.58 5.50 84.86 0.47 -4.12 16 20 N -0.97 -61.08 13.06 21.65 0.28 -60.80 16 21 Si 0.98 46.80 29.55 68.60 2.03 48.83 16 22 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 23 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 24 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 25 C -0.12 -2.30 5.73 30.67 0.18 -2.12 16 26 C 0.09 1.45 6.09 86.36 0.53 1.98 16 27 N -0.29 -6.01 12.09 -52.44 -0.63 -6.64 16 28 H 0.11 -0.49 8.14 -2.39 -0.02 -0.51 16 29 H 0.09 0.00 8.14 -2.38 -0.02 -0.02 16 30 H 0.14 -1.43 8.14 -2.39 -0.02 -1.45 16 31 H 0.28 -1.82 8.06 -2.91 -0.02 -1.84 16 32 H 0.08 1.87 7.00 -2.39 -0.02 1.85 16 33 H 0.10 1.41 8.14 -2.39 -0.02 1.40 16 34 H 0.09 1.67 7.84 -2.38 -0.02 1.66 16 35 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.08 1.37 7.79 -2.38 -0.02 1.35 16 37 H 0.06 1.44 7.84 -2.39 -0.02 1.42 16 38 H 0.07 1.53 8.08 -2.39 -0.02 1.51 16 39 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 40 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 41 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.37 21.20 7.67 -92.71 -0.71 20.49 16 44 H 0.25 15.23 8.31 -92.71 -0.77 14.46 16 45 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 46 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 47 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 48 H 0.14 2.36 4.15 -17.41 -0.07 2.28 16 Total: -1.00 -86.62 393.97 2.42 -84.20 By element: Atomic # 1 Polarization: 20.76 SS G_CDS: 0.20 Total: 20.96 kcal Atomic # 6 Polarization: 5.70 SS G_CDS: 9.39 Total: 15.08 kcal Atomic # 7 Polarization: -129.95 SS G_CDS: -7.64 Total: -137.59 kcal Atomic # 8 Polarization: -29.94 SS G_CDS: -1.55 Total: -31.49 kcal Atomic # 14 Polarization: 46.80 SS G_CDS: 2.03 Total: 48.83 kcal Total: -86.62 2.42 -84.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276159419.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.608 kcal (2) G-P(sol) polarization free energy of solvation -86.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds