Wall clock time and date at job start Tue Mar 31 2020 21:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46507 * 119.99856 * 2 1 4 4 C 1.38398 * 120.00453 * 179.97438 * 2 1 3 5 5 C 1.39894 * 119.99576 * 5.00312 * 4 2 1 6 6 N 1.31453 * 120.01877 * 179.97438 * 5 4 2 7 7 C 1.33287 * 120.00406 * 0.02584 * 6 5 4 8 8 C 1.47819 * 120.00157 * 179.97438 * 7 6 5 9 9 O 1.21556 * 119.99968 * 179.97438 * 8 7 6 10 10 N 1.34782 * 119.99640 * 359.72768 * 8 7 6 11 11 C 1.46498 * 119.99350 * 180.27723 * 10 8 7 12 12 C 1.53005 * 109.46647 * 179.97438 * 11 10 8 13 13 O 1.42901 * 109.47265 * 65.00025 * 12 11 10 14 14 C 1.42900 * 114.00410 * 180.02562 * 13 12 11 15 15 C 1.52992 * 109.47334 * 179.97438 * 14 13 12 16 16 N 1.46505 * 109.47369 * 64.99827 * 15 14 13 17 17 C 1.46497 * 119.99906 * 269.99943 * 16 15 14 18 18 C 1.36939 * 120.00010 * 89.99808 * 16 15 14 19 19 H 1.07997 * 119.99776 * 22.70640 * 18 16 15 20 20 C 1.38809 * 119.99644 * 202.70995 * 18 16 15 21 21 N 1.31615 * 120.00496 * 11.51247 * 20 18 16 22 22 Si 1.86807 * 119.99763 * 191.51393 * 20 18 16 23 23 H 1.48501 * 109.46901 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.46865 * 119.99536 * 22 20 18 25 25 H 1.48493 * 109.47430 * 240.00071 * 22 20 18 26 26 C 1.39407 * 119.99571 * 0.27129 * 7 6 5 27 27 N 1.32052 * 119.98469 * 359.43560 * 26 7 6 28 28 H 1.08994 * 109.47412 * 269.99826 * 1 2 3 29 29 H 1.09008 * 109.47286 * 30.00645 * 1 2 3 30 30 H 1.09009 * 109.46875 * 150.00155 * 1 2 3 31 31 H 1.08998 * 109.46541 * 269.99775 * 3 2 1 32 32 H 1.08994 * 109.47057 * 29.99528 * 3 2 1 33 33 H 1.08998 * 109.47286 * 149.99987 * 3 2 1 34 34 H 1.08000 * 119.99227 * 359.97438 * 5 4 2 35 35 H 0.96993 * 119.99849 * 0.26796 * 10 8 7 36 36 H 1.08999 * 109.47045 * 299.98853 * 11 10 8 37 37 H 1.08993 * 109.47711 * 59.99592 * 11 10 8 38 38 H 1.09001 * 109.47132 * 184.99497 * 12 11 10 39 39 H 1.08996 * 109.47104 * 304.99872 * 12 11 10 40 40 H 1.09000 * 109.46785 * 299.99713 * 14 13 12 41 41 H 1.09001 * 109.47488 * 59.99228 * 14 13 12 42 42 H 1.09004 * 109.47298 * 184.99536 * 15 14 13 43 43 H 1.08998 * 109.47188 * 304.99663 * 15 14 13 44 44 H 1.09006 * 109.46716 * 93.91315 * 17 16 15 45 45 H 1.08993 * 109.47351 * 213.90942 * 17 16 15 46 46 H 1.09004 * 109.47107 * 333.91765 * 17 16 15 47 47 H 0.96994 * 120.00172 * 179.97438 * 21 20 18 48 48 H 1.07999 * 120.00450 * 179.72404 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1570 -1.1985 0.0005 5 6 1.4616 -2.4078 -0.1046 6 7 2.1185 -3.5464 -0.1046 7 6 3.4476 -3.5491 -0.0040 8 6 4.1862 -4.8295 -0.0035 9 8 5.3983 -4.8319 0.0879 10 7 3.5152 -5.9945 -0.0992 11 6 4.2469 -7.2637 -0.0926 12 6 3.2564 -8.4238 -0.2118 13 8 2.6081 -8.3678 -1.4840 14 6 1.6570 -9.4126 -1.6982 15 6 1.0282 -9.2537 -3.0839 16 7 2.0546 -9.4473 -4.1112 17 6 2.8268 -8.3023 -4.5999 18 6 2.2922 -10.6984 -4.6145 19 1 1.5274 -11.4586 -4.5548 20 6 3.5160 -10.9895 -5.2014 21 7 4.5221 -10.1503 -5.0762 22 14 3.7348 -12.5724 -6.1690 23 1 2.4624 -13.3380 -6.1599 24 1 4.1085 -12.2489 -7.5693 25 1 4.8075 -13.3889 -5.5463 26 6 4.1405 -2.3445 0.1070 27 7 3.4808 -1.2006 0.1012 28 1 -0.3634 0.0000 1.0276 29 1 -0.3634 0.8900 -0.5140 30 1 -0.3633 -0.8901 -0.5139 31 1 2.3791 1.5833 -1.0277 32 1 1.6083 2.0284 0.5137 33 1 3.1499 1.1385 0.5138 34 1 0.3846 -2.4059 -0.1857 35 1 2.5481 -5.9925 -0.1724 36 1 4.9389 -7.2885 -0.9344 37 1 4.8046 -7.3568 0.8392 38 1 3.7911 -9.3690 -0.1178 39 1 2.5109 -8.3478 0.5796 40 1 2.1581 -10.3786 -1.6349 41 1 0.8783 -9.3568 -0.9376 42 1 0.2406 -9.9962 -3.2128 43 1 0.6040 -8.2540 -3.1779 44 1 3.7548 -8.2216 -4.0336 45 1 3.0568 -8.4433 -5.6559 46 1 2.2436 -7.3901 -4.4736 47 1 5.3773 -10.3540 -5.4860 48 1 5.2171 -2.3467 0.1931 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277494037.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:39 Heat of formation + Delta-G solvation = 13.334702 kcal Electronic energy + Delta-G solvation = -28820.416350 eV Core-core repulsion = 24719.522125 eV Total energy + Delta-G solvation = -4100.894225 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.43488 -39.33645 -37.60671 -37.24601 -35.38357 -34.62884 -34.06778 -31.50586 -31.20653 -29.41473 -28.94053 -27.80088 -26.46372 -25.64588 -24.44556 -23.32532 -22.92619 -22.06477 -20.70342 -20.27081 -18.36142 -18.01673 -17.51326 -16.79443 -16.13996 -16.04105 -15.96566 -15.45681 -15.08553 -15.05115 -14.85050 -14.69157 -14.24790 -14.08277 -13.72717 -13.42266 -13.28443 -13.11592 -13.02201 -12.85655 -12.52348 -12.49034 -12.07998 -11.73108 -11.58295 -11.47084 -11.33055 -10.86553 -10.78701 -10.71789 -10.46047 -10.42090 -10.23960 -9.99464 -9.84348 -9.75342 -9.31267 -8.94003 -8.91595 -8.44097 -8.12732 -6.61365 -5.60306 -3.06659 0.43926 0.90779 2.27999 2.76969 3.21824 3.42623 3.49334 3.51428 3.72509 3.92371 3.98107 4.10176 4.24630 4.57071 4.58307 4.70327 4.76563 4.83798 4.97731 5.09925 5.13196 5.24145 5.30313 5.38419 5.40043 5.50698 5.63135 5.74316 5.79407 5.86200 6.07514 6.17264 6.20613 6.26955 6.30243 6.54966 6.60394 6.62685 6.83395 7.02636 7.08716 7.47009 7.57588 7.72211 7.86220 7.88915 8.04710 8.29399 8.51395 9.35824 9.99808 10.50556 11.43724 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.016496 B = 0.002179 C = 0.002109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.968828 B =12847.702000 C =13275.026619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.600 5.600 3 C 0.092 3.908 4 C 0.370 3.630 5 C -0.006 4.006 6 N -0.372 5.372 7 C -0.044 4.044 8 C 0.581 3.419 9 O -0.543 6.543 10 N -0.700 5.700 11 C 0.123 3.877 12 C 0.051 3.949 13 O -0.366 6.366 14 C 0.043 3.957 15 C 0.152 3.848 16 N -0.596 5.596 17 C 0.175 3.825 18 C -0.255 4.255 19 H 0.067 0.933 20 C 0.001 3.999 21 N -0.902 5.902 22 Si 0.901 3.099 23 H -0.279 1.279 24 H -0.290 1.290 25 H -0.292 1.292 26 C 0.171 3.829 27 N -0.509 5.509 28 H 0.060 0.940 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.054 0.946 32 H 0.068 0.932 33 H 0.083 0.917 34 H 0.171 0.829 35 H 0.412 0.588 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.062 0.938 39 H 0.044 0.956 40 H 0.048 0.952 41 H 0.025 0.975 42 H 0.058 0.942 43 H 0.043 0.957 44 H 0.032 0.968 45 H 0.037 0.963 46 H -0.007 1.007 47 H 0.250 0.750 48 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.946 21.095 14.896 27.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.312 5.312 3 C -0.051 4.051 4 C 0.130 3.870 5 C -0.178 4.178 6 N -0.087 5.087 7 C -0.185 4.185 8 C 0.365 3.635 9 O -0.420 6.420 10 N -0.350 5.350 11 C 0.000 4.000 12 C -0.027 4.027 13 O -0.284 6.284 14 C -0.036 4.036 15 C 0.024 3.976 16 N -0.319 5.319 17 C 0.030 3.970 18 C -0.385 4.385 19 H 0.084 0.916 20 C -0.197 4.197 21 N -0.547 5.547 22 Si 0.732 3.268 23 H -0.204 1.204 24 H -0.217 1.217 25 H -0.219 1.219 26 C 0.009 3.991 27 N -0.231 5.231 28 H 0.079 0.921 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.072 0.928 32 H 0.087 0.913 33 H 0.101 0.899 34 H 0.188 0.812 35 H 0.248 0.752 36 H 0.101 0.899 37 H 0.097 0.903 38 H 0.080 0.920 39 H 0.062 0.938 40 H 0.066 0.934 41 H 0.043 0.957 42 H 0.076 0.924 43 H 0.062 0.938 44 H 0.051 0.949 45 H 0.055 0.945 46 H 0.011 0.989 47 H 0.061 0.939 48 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -7.932 21.342 14.716 27.110 hybrid contribution -0.281 -1.070 -0.331 1.155 sum -8.213 20.271 14.384 26.178 Atomic orbital electron populations 1.21886 0.77552 1.03850 1.02281 1.46208 1.05713 1.03062 1.76221 1.21715 0.97887 0.83541 1.01951 1.19625 0.89889 0.87581 0.89902 1.23199 1.01394 0.86570 1.06659 1.68138 1.07811 1.28849 1.03928 1.21701 0.90621 0.95682 1.10497 1.17458 0.86403 0.82742 0.76858 1.90791 1.12952 1.87121 1.51164 1.45722 1.11694 1.05095 1.72531 1.21462 0.94581 0.81163 1.02808 1.22601 0.95060 0.97578 0.87463 1.88025 1.56892 1.50613 1.32907 1.23497 0.90250 0.90507 0.99389 1.20891 0.91718 0.98749 0.86204 1.43892 1.41422 1.05201 1.41374 1.20687 0.93416 0.84810 0.98083 1.19236 0.96789 0.89479 1.33004 0.91559 1.25042 0.95283 0.97788 1.01630 1.70106 1.01459 1.36361 1.46757 0.86237 0.77512 0.83305 0.79792 1.20439 1.21717 1.21865 1.23506 1.01637 0.85887 0.88054 1.68113 1.06238 1.29530 1.19247 0.92131 0.90281 0.90438 0.92760 0.91291 0.89871 0.81164 0.75171 0.89860 0.90339 0.92011 0.93784 0.93357 0.95735 0.92432 0.93818 0.94940 0.94473 0.98864 0.93949 0.80070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.31 10.28 59.84 0.62 0.92 16 2 N -0.60 -4.19 3.37 -189.51 -0.64 -4.83 16 3 C 0.09 0.51 10.50 59.85 0.63 1.14 16 4 C 0.37 3.68 7.37 -155.01 -1.14 2.54 16 5 C -0.01 -0.06 10.42 -17.09 -0.18 -0.23 16 6 N -0.37 -4.65 9.69 -9.44 -0.09 -4.74 16 7 C -0.04 -0.60 6.74 -82.88 -0.56 -1.16 16 8 C 0.58 9.05 7.80 -12.34 -0.10 8.96 16 9 O -0.54 -9.72 16.33 5.32 0.09 -9.64 16 10 N -0.70 -10.40 5.49 -61.26 -0.34 -10.73 16 11 C 0.12 1.86 6.06 -4.04 -0.02 1.84 16 12 C 0.05 0.77 6.07 37.16 0.23 1.00 16 13 O -0.37 -7.12 9.84 -35.23 -0.35 -7.46 16 14 C 0.04 0.82 6.28 37.15 0.23 1.05 16 15 C 0.15 3.20 6.11 -4.04 -0.02 3.18 16 16 N -0.60 -15.57 2.89 -181.12 -0.52 -16.10 16 17 C 0.17 4.64 8.61 59.85 0.52 5.15 16 18 C -0.26 -7.17 9.67 -15.06 -0.15 -7.31 16 19 H 0.07 1.80 7.85 -52.49 -0.41 1.39 16 20 C 0.00 0.03 5.12 -17.43 -0.09 -0.06 16 21 N -0.90 -27.22 10.62 55.49 0.59 -26.63 16 22 Si 0.90 22.31 29.57 -169.99 -5.03 17.29 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 25 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 26 C 0.17 2.09 10.76 -17.02 -0.18 1.91 16 27 N -0.51 -5.84 9.22 -11.96 -0.11 -5.95 16 28 H 0.06 0.16 8.14 -51.93 -0.42 -0.26 16 29 H 0.08 0.16 8.07 -51.92 -0.42 -0.26 16 30 H 0.08 0.23 5.98 -51.92 -0.31 -0.08 16 31 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.07 0.23 8.07 -51.93 -0.42 -0.19 16 33 H 0.08 0.57 7.30 -51.93 -0.38 0.19 16 34 H 0.17 1.13 6.02 -52.49 -0.32 0.81 16 35 H 0.41 5.82 7.81 -40.82 -0.32 5.50 16 36 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 37 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 38 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 42 H 0.06 1.13 8.03 -51.93 -0.42 0.71 16 43 H 0.04 0.86 7.87 -51.93 -0.41 0.45 16 44 H 0.03 0.94 7.43 -51.93 -0.39 0.55 16 45 H 0.04 1.05 7.20 -51.93 -0.37 0.67 16 46 H -0.01 -0.17 7.85 -51.93 -0.41 -0.58 16 47 H 0.25 7.32 8.31 -40.82 -0.34 6.99 16 48 H 0.18 2.02 7.63 -52.49 -0.40 1.62 16 LS Contribution 400.70 15.07 6.04 6.04 Total: -1.00 -35.47 400.70 -8.07 -43.54 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -7.48 Total: 0.30 kcal Atomic # 6 Polarization: 19.15 SS G_CDS: -0.22 Total: 18.93 kcal Atomic # 7 Polarization: -67.87 SS G_CDS: -1.11 Total: -68.99 kcal Atomic # 8 Polarization: -16.84 SS G_CDS: -0.26 Total: -17.10 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.03 Total: 17.29 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -35.47 -8.07 -43.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277494037.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.871 kcal (2) G-P(sol) polarization free energy of solvation -35.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds