Wall clock time and date at job start Tue Mar 31 2020 21:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46507 * 119.99856 * 2 1 4 4 C 1.38398 * 120.00453 * 179.97438 * 2 1 3 5 5 C 1.39894 * 119.99576 * 5.00312 * 4 2 1 6 6 N 1.31453 * 120.01877 * 179.97438 * 5 4 2 7 7 C 1.33287 * 120.00406 * 0.02584 * 6 5 4 8 8 C 1.47819 * 120.00157 * 179.97438 * 7 6 5 9 9 O 1.21556 * 119.99968 * 179.97438 * 8 7 6 10 10 N 1.34782 * 119.99640 * 359.72768 * 8 7 6 11 11 C 1.46498 * 119.99350 * 180.27723 * 10 8 7 12 12 C 1.53005 * 109.46647 * 179.97438 * 11 10 8 13 13 O 1.42901 * 109.47265 * 65.00025 * 12 11 10 14 14 C 1.42900 * 114.00410 * 180.02562 * 13 12 11 15 15 C 1.52992 * 109.47334 * 179.97438 * 14 13 12 16 16 N 1.46505 * 109.47369 * 64.99827 * 15 14 13 17 17 C 1.46497 * 119.99906 * 269.99943 * 16 15 14 18 18 C 1.36939 * 120.00010 * 89.99808 * 16 15 14 19 19 H 1.07997 * 119.99776 * 22.70640 * 18 16 15 20 20 C 1.38809 * 119.99644 * 202.70995 * 18 16 15 21 21 N 1.31615 * 120.00496 * 11.51247 * 20 18 16 22 22 Si 1.86807 * 119.99763 * 191.51393 * 20 18 16 23 23 H 1.48501 * 109.46901 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.46865 * 119.99536 * 22 20 18 25 25 H 1.48493 * 109.47430 * 240.00071 * 22 20 18 26 26 C 1.39407 * 119.99571 * 0.27129 * 7 6 5 27 27 N 1.32052 * 119.98469 * 359.43560 * 26 7 6 28 28 H 1.08994 * 109.47412 * 269.99826 * 1 2 3 29 29 H 1.09008 * 109.47286 * 30.00645 * 1 2 3 30 30 H 1.09009 * 109.46875 * 150.00155 * 1 2 3 31 31 H 1.08998 * 109.46541 * 269.99775 * 3 2 1 32 32 H 1.08994 * 109.47057 * 29.99528 * 3 2 1 33 33 H 1.08998 * 109.47286 * 149.99987 * 3 2 1 34 34 H 1.08000 * 119.99227 * 359.97438 * 5 4 2 35 35 H 0.96993 * 119.99849 * 0.26796 * 10 8 7 36 36 H 1.08999 * 109.47045 * 299.98853 * 11 10 8 37 37 H 1.08993 * 109.47711 * 59.99592 * 11 10 8 38 38 H 1.09001 * 109.47132 * 184.99497 * 12 11 10 39 39 H 1.08996 * 109.47104 * 304.99872 * 12 11 10 40 40 H 1.09000 * 109.46785 * 299.99713 * 14 13 12 41 41 H 1.09001 * 109.47488 * 59.99228 * 14 13 12 42 42 H 1.09004 * 109.47298 * 184.99536 * 15 14 13 43 43 H 1.08998 * 109.47188 * 304.99663 * 15 14 13 44 44 H 1.09006 * 109.46716 * 93.91315 * 17 16 15 45 45 H 1.08993 * 109.47351 * 213.90942 * 17 16 15 46 46 H 1.09004 * 109.47107 * 333.91765 * 17 16 15 47 47 H 0.96994 * 120.00172 * 179.97438 * 21 20 18 48 48 H 1.07999 * 120.00450 * 179.72404 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1570 -1.1985 0.0005 5 6 1.4616 -2.4078 -0.1046 6 7 2.1185 -3.5464 -0.1046 7 6 3.4476 -3.5491 -0.0040 8 6 4.1862 -4.8295 -0.0035 9 8 5.3983 -4.8319 0.0879 10 7 3.5152 -5.9945 -0.0992 11 6 4.2469 -7.2637 -0.0926 12 6 3.2564 -8.4238 -0.2118 13 8 2.6081 -8.3678 -1.4840 14 6 1.6570 -9.4126 -1.6982 15 6 1.0282 -9.2537 -3.0839 16 7 2.0546 -9.4473 -4.1112 17 6 2.8268 -8.3023 -4.5999 18 6 2.2922 -10.6984 -4.6145 19 1 1.5274 -11.4586 -4.5548 20 6 3.5160 -10.9895 -5.2014 21 7 4.5221 -10.1503 -5.0762 22 14 3.7348 -12.5724 -6.1690 23 1 2.4624 -13.3380 -6.1599 24 1 4.1085 -12.2489 -7.5693 25 1 4.8075 -13.3889 -5.5463 26 6 4.1405 -2.3445 0.1070 27 7 3.4808 -1.2006 0.1012 28 1 -0.3634 0.0000 1.0276 29 1 -0.3634 0.8900 -0.5140 30 1 -0.3633 -0.8901 -0.5139 31 1 2.3791 1.5833 -1.0277 32 1 1.6083 2.0284 0.5137 33 1 3.1499 1.1385 0.5138 34 1 0.3846 -2.4059 -0.1857 35 1 2.5481 -5.9925 -0.1724 36 1 4.9389 -7.2885 -0.9344 37 1 4.8046 -7.3568 0.8392 38 1 3.7911 -9.3690 -0.1178 39 1 2.5109 -8.3478 0.5796 40 1 2.1581 -10.3786 -1.6349 41 1 0.8783 -9.3568 -0.9376 42 1 0.2406 -9.9962 -3.2128 43 1 0.6040 -8.2540 -3.1779 44 1 3.7548 -8.2216 -4.0336 45 1 3.0568 -8.4433 -5.6559 46 1 2.2436 -7.3901 -4.4736 47 1 5.3773 -10.3540 -5.4860 48 1 5.2171 -2.3467 0.1931 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277494037.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:37 Heat of formation + Delta-G solvation = -12.630204 kcal Electronic energy + Delta-G solvation = -28821.542273 eV Core-core repulsion = 24719.522125 eV Total energy + Delta-G solvation = -4102.020148 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.28061 -40.47786 -39.01783 -37.95773 -37.20383 -35.83497 -35.08318 -33.39662 -32.18395 -30.81141 -29.38269 -29.35940 -27.81822 -27.22196 -25.24764 -24.82708 -24.17090 -23.10022 -22.12564 -21.79273 -19.34689 -18.81740 -18.74867 -18.28260 -17.57674 -17.28893 -16.82858 -16.77284 -16.39945 -16.14132 -16.00226 -15.57293 -15.43874 -15.27065 -15.17361 -14.91039 -14.76087 -14.31936 -14.02303 -13.76468 -13.42791 -13.30400 -13.14411 -13.01404 -12.92304 -12.74345 -12.52833 -12.49819 -12.46054 -12.42738 -12.31977 -11.98500 -11.77284 -11.65959 -11.41434 -11.14746 -10.61846 -10.36866 -10.19160 -10.14350 -8.79500 -8.72189 -7.76676 -5.25121 -0.45341 0.07712 1.46732 1.47657 1.58270 1.69285 1.70793 2.12372 2.53499 2.78791 2.88947 3.07402 3.22509 3.36310 3.36407 3.78055 3.86465 3.98682 4.04340 4.20303 4.23906 4.37646 4.46898 4.49727 4.55185 4.56887 4.61079 4.64398 4.70838 4.76684 4.88164 4.92197 4.93974 4.95139 5.01928 5.09385 5.22428 5.37442 5.37739 5.65030 5.67626 5.83221 5.94371 6.26276 6.36860 6.48538 6.50111 6.76974 7.13327 7.19792 7.93258 8.39621 9.26795 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.016496 B = 0.002179 C = 0.002109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.968828 B =12847.702000 C =13275.026619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.591 5.591 3 C 0.087 3.913 4 C 0.369 3.631 5 C 0.002 3.998 6 N -0.385 5.385 7 C -0.075 4.075 8 C 0.578 3.422 9 O -0.577 6.577 10 N -0.695 5.695 11 C 0.128 3.872 12 C 0.054 3.946 13 O -0.394 6.394 14 C 0.052 3.948 15 C 0.145 3.855 16 N -0.613 5.613 17 C 0.196 3.804 18 C -0.258 4.258 19 H 0.076 0.924 20 C -0.060 4.060 21 N -0.938 5.938 22 Si 0.968 3.032 23 H -0.262 1.262 24 H -0.295 1.295 25 H -0.295 1.295 26 C 0.171 3.829 27 N -0.525 5.525 28 H 0.075 0.925 29 H 0.100 0.900 30 H 0.086 0.914 31 H 0.057 0.943 32 H 0.098 0.902 33 H 0.067 0.933 34 H 0.206 0.794 35 H 0.417 0.583 36 H 0.047 0.953 37 H 0.097 0.903 38 H 0.059 0.941 39 H 0.079 0.921 40 H 0.023 0.977 41 H 0.070 0.930 42 H 0.074 0.926 43 H 0.059 0.941 44 H -0.001 1.001 45 H 0.009 0.991 46 H 0.016 0.984 47 H 0.244 0.756 48 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.231 22.047 15.879 29.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.301 5.301 3 C -0.056 4.056 4 C 0.126 3.874 5 C -0.173 4.173 6 N -0.101 5.101 7 C -0.213 4.213 8 C 0.364 3.636 9 O -0.458 6.458 10 N -0.346 5.346 11 C 0.005 3.995 12 C -0.023 4.023 13 O -0.314 6.314 14 C -0.027 4.027 15 C 0.019 3.981 16 N -0.336 5.336 17 C 0.051 3.949 18 C -0.388 4.388 19 H 0.094 0.906 20 C -0.254 4.254 21 N -0.586 5.586 22 Si 0.797 3.203 23 H -0.186 1.186 24 H -0.222 1.222 25 H -0.222 1.222 26 C 0.010 3.990 27 N -0.249 5.249 28 H 0.094 0.906 29 H 0.119 0.881 30 H 0.104 0.896 31 H 0.075 0.925 32 H 0.117 0.883 33 H 0.086 0.914 34 H 0.223 0.777 35 H 0.254 0.746 36 H 0.065 0.935 37 H 0.115 0.885 38 H 0.077 0.923 39 H 0.097 0.903 40 H 0.041 0.959 41 H 0.088 0.912 42 H 0.093 0.907 43 H 0.077 0.923 44 H 0.017 0.983 45 H 0.028 0.972 46 H 0.035 0.965 47 H 0.053 0.947 48 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -11.284 22.302 15.728 29.530 hybrid contribution 0.535 -1.123 -0.582 1.373 sum -10.749 21.179 15.146 28.169 Atomic orbital electron populations 1.22225 0.75143 1.05405 1.03717 1.46642 1.07241 1.02448 1.73722 1.21856 0.97816 0.83543 1.02361 1.19960 0.89611 0.88955 0.88888 1.23776 1.02768 0.85761 1.05007 1.68079 1.07274 1.30177 1.04524 1.21330 0.91289 0.94750 1.13945 1.17813 0.86176 0.83591 0.75982 1.90754 1.14410 1.87716 1.52895 1.45676 1.11823 1.04821 1.72293 1.21372 0.94285 0.81684 1.02194 1.22708 0.95603 0.97235 0.86763 1.87981 1.57502 1.50636 1.35283 1.23254 0.90957 0.89199 0.99315 1.21146 0.90787 1.00199 0.85993 1.44112 1.42038 1.04353 1.43116 1.20305 0.92677 0.86210 0.95746 1.19625 0.96777 0.90255 1.32165 0.90609 1.25851 0.95232 1.01095 1.03233 1.70301 1.01706 1.38381 1.48166 0.85183 0.77773 0.79635 0.77742 1.18594 1.22179 1.22235 1.23482 1.01779 0.85954 0.87820 1.68155 1.07255 1.28911 1.20550 0.90646 0.88132 0.89577 0.92456 0.88328 0.91445 0.77733 0.74612 0.93480 0.88485 0.92270 0.90296 0.95868 0.91239 0.90745 0.92300 0.98296 0.97246 0.96533 0.94697 0.80155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.24 10.28 127.77 1.31 1.55 16 2 N -0.59 -6.61 3.37 -753.48 -2.54 -9.15 16 3 C 0.09 0.77 10.50 127.77 1.34 2.11 16 4 C 0.37 6.72 7.37 133.35 0.98 7.71 16 5 C 0.00 0.03 10.42 85.15 0.89 0.92 16 6 N -0.39 -9.33 9.69 -183.79 -1.78 -11.11 16 7 C -0.07 -2.07 6.74 41.74 0.28 -1.79 16 8 C 0.58 18.79 7.80 86.78 0.68 19.47 16 9 O -0.58 -21.92 16.33 -3.89 -0.06 -21.99 16 10 N -0.70 -20.99 5.49 -466.00 -2.56 -23.55 16 11 C 0.13 3.97 6.06 86.38 0.52 4.50 16 12 C 0.05 1.60 6.07 71.98 0.44 2.04 16 13 O -0.39 -15.10 9.84 -148.98 -1.47 -16.57 16 14 C 0.05 1.87 6.28 71.98 0.45 2.32 16 15 C 0.14 5.81 6.11 86.38 0.53 6.34 16 16 N -0.61 -31.88 2.89 -726.94 -2.10 -33.98 16 17 C 0.20 10.61 8.61 127.77 1.10 11.71 16 18 C -0.26 -14.41 9.67 84.03 0.81 -13.60 16 19 H 0.08 4.02 7.85 -2.91 -0.02 3.99 16 20 C -0.06 -3.45 5.12 84.86 0.43 -3.01 16 21 N -0.94 -58.43 10.62 21.65 0.23 -58.20 16 22 Si 0.97 46.35 29.57 68.60 2.03 48.38 16 23 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 24 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 25 H -0.30 -14.18 7.11 99.48 0.71 -13.48 16 26 C 0.17 4.34 10.76 84.94 0.91 5.26 16 27 N -0.53 -11.94 9.22 -191.74 -1.77 -13.71 16 28 H 0.08 0.09 8.14 -2.39 -0.02 0.07 16 29 H 0.10 -0.05 8.07 -2.38 -0.02 -0.07 16 30 H 0.09 0.16 5.98 -2.38 -0.01 0.14 16 31 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.10 0.31 8.07 -2.39 -0.02 0.29 16 33 H 0.07 0.85 7.30 -2.39 -0.02 0.83 16 34 H 0.21 1.98 6.02 -2.91 -0.02 1.96 16 35 H 0.42 11.59 7.81 -92.71 -0.72 10.87 16 36 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.10 2.62 8.14 -2.39 -0.02 2.60 16 38 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 42 H 0.07 2.71 8.03 -2.38 -0.02 2.70 16 43 H 0.06 2.18 7.87 -2.39 -0.02 2.16 16 44 H 0.00 -0.08 7.43 -2.38 -0.02 -0.10 16 45 H 0.01 0.52 7.20 -2.39 -0.02 0.50 16 46 H 0.02 0.79 7.85 -2.39 -0.02 0.77 16 47 H 0.24 14.81 8.31 -92.71 -0.77 14.04 16 48 H 0.18 4.37 7.63 -2.91 -0.02 4.34 16 Total: -1.00 -79.42 400.70 0.91 -78.51 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: 0.25 Total: 15.86 kcal Atomic # 6 Polarization: 34.83 SS G_CDS: 10.69 Total: 45.52 kcal Atomic # 7 Polarization: -139.19 SS G_CDS: -10.52 Total: -149.70 kcal Atomic # 8 Polarization: -37.02 SS G_CDS: -1.53 Total: -38.56 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.38 kcal Total: -79.42 0.91 -78.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277494037.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.879 kcal (2) G-P(sol) polarization free energy of solvation -79.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds