Wall clock time and date at job start Tue Mar 31 2020 21:12:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.34780 * 120.00111 * 2 1 4 4 O 1.21280 * 120.00423 * 179.97438 * 3 2 1 5 5 C 1.50701 * 119.99795 * 0.02562 * 3 2 1 6 6 C 1.52997 * 109.47212 * 179.97438 * 5 3 2 7 7 N 1.46500 * 109.47473 * 179.97438 * 6 5 3 8 8 N 1.40168 * 126.35097 * 269.68829 * 7 6 5 9 9 C 1.29402 * 108.13900 * 179.87482 * 8 7 6 10 10 N 1.37360 * 108.82958 * 0.38770 * 9 8 7 11 11 C 1.46502 * 125.83129 * 179.77286 * 10 9 8 12 12 C 1.34813 * 108.33314 * 359.74931 * 10 9 8 13 13 O 1.21821 * 126.30167 * 180.02562 * 12 10 9 14 14 C 1.46497 * 120.00322 * 180.02562 * 2 1 3 15 15 H 1.09008 * 109.47432 * 179.97438 * 14 2 1 16 16 C 1.52999 * 109.47308 * 59.99673 * 14 2 1 17 17 N 1.46501 * 109.46913 * 55.00005 * 16 14 2 18 18 C 1.36942 * 119.99739 * 180.02562 * 17 16 14 19 19 H 1.08000 * 120.00357 * 359.97438 * 18 17 16 20 20 C 1.38814 * 119.99736 * 180.02562 * 18 17 16 21 21 N 1.31620 * 119.99894 * 179.97438 * 20 18 17 22 22 Si 1.86798 * 120.00102 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.47455 * 89.99878 * 22 20 18 24 24 H 1.48500 * 109.47265 * 210.00254 * 22 20 18 25 25 H 1.48501 * 109.47046 * 329.99735 * 22 20 18 26 26 C 1.53004 * 109.46754 * 299.99778 * 14 2 1 27 27 C 1.52998 * 117.49656 * 248.74247 * 26 14 2 28 28 C 1.53005 * 117.49686 * 180.08402 * 26 14 2 29 29 H 1.08995 * 109.47620 * 89.99771 * 1 2 3 30 30 H 1.09006 * 109.47028 * 209.99878 * 1 2 3 31 31 H 1.09002 * 109.47109 * 329.99455 * 1 2 3 32 32 H 1.09002 * 109.47060 * 299.99722 * 5 3 2 33 33 H 1.09001 * 109.47380 * 59.99809 * 5 3 2 34 34 H 1.09002 * 109.47153 * 299.99998 * 6 5 3 35 35 H 1.08998 * 109.47533 * 59.99628 * 6 5 3 36 36 H 1.07997 * 125.58211 * 180.13839 * 9 8 7 37 37 H 1.09000 * 109.47004 * 269.97773 * 11 10 9 38 38 H 1.09002 * 109.47297 * 29.97515 * 11 10 9 39 39 H 1.08996 * 109.46806 * 149.97403 * 11 10 9 40 40 H 1.08994 * 109.47411 * 175.00313 * 16 14 2 41 41 H 1.09001 * 109.46956 * 295.00459 * 16 14 2 42 42 H 0.97000 * 120.00106 * 0.02562 * 17 16 14 43 43 H 0.96999 * 119.99561 * 179.97438 * 21 20 18 44 44 H 1.08994 * 115.54948 * 34.41686 * 26 14 2 45 45 H 1.08998 * 117.50238 * 359.97438 * 27 26 14 46 46 H 1.08999 * 117.49714 * 145.02573 * 27 26 14 47 47 H 1.08997 * 117.50074 * 214.98144 * 28 26 14 48 48 H 1.09006 * 117.49987 * 359.97438 * 28 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3516 1.1673 0.0005 5 6 1.3853 2.4723 0.0006 6 6 2.3795 3.6352 0.0011 7 7 1.6470 4.9040 0.0011 8 7 1.2373 5.6268 -1.1279 9 6 0.6184 6.6888 -0.7235 10 7 0.6101 6.7012 0.6500 11 6 0.0112 7.7376 1.4947 12 6 1.2468 5.5965 1.0879 13 8 1.4271 5.2812 2.2507 14 6 2.1975 -1.2687 -0.0006 15 1 3.2692 -1.0695 -0.0009 16 6 1.8279 -2.0705 -1.2501 17 7 2.0706 -1.2553 -2.4429 18 6 1.8102 -1.7666 -3.6863 19 1 1.4263 -2.7710 -3.7876 20 6 2.0406 -0.9944 -4.8165 21 7 1.7908 -1.4860 -6.0116 22 14 2.7066 0.7420 -4.6414 23 1 4.1910 0.7078 -4.6661 24 1 2.2120 1.5776 -5.7650 25 1 2.2462 1.3213 -3.3539 26 6 1.8279 -2.0715 1.2484 27 6 2.9088 -2.2553 2.3154 28 6 2.4944 -3.4361 1.4339 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8899 0.5139 32 1 0.7583 2.5303 -0.8892 33 1 0.7589 2.5299 0.8908 34 1 3.0062 3.5771 0.8911 35 1 3.0062 3.5780 -0.8888 36 1 0.1835 7.4439 -1.3615 37 1 0.7529 8.5081 1.7053 38 1 -0.8381 8.1827 0.9765 39 1 -0.3267 7.2929 2.4307 40 1 2.4376 -2.9727 -1.2964 41 1 0.7741 -2.3459 -1.2065 42 1 2.4157 -0.3533 -2.3519 43 1 1.9515 -0.9462 -6.8013 44 1 0.7979 -1.9640 1.5885 45 1 3.8834 -1.8048 2.1275 46 1 2.5899 -2.2693 3.3577 47 1 1.9031 -4.2264 1.8964 48 1 3.1959 -3.7622 0.6659 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277677513.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:12:03 Heat of formation + Delta-G solvation = 64.279189 kcal Electronic energy + Delta-G solvation = -30121.850588 eV Core-core repulsion = 26023.165481 eV Total energy + Delta-G solvation = -4098.685107 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.62324 -40.07697 -37.78000 -37.43196 -35.86284 -35.27794 -34.17068 -32.95599 -31.42287 -30.16363 -28.62176 -27.68033 -26.66141 -25.06680 -23.91719 -22.58881 -22.35858 -21.38653 -21.29362 -20.17256 -18.97613 -18.01583 -17.57667 -17.03506 -16.95232 -16.37867 -16.23365 -15.79506 -15.51500 -14.88845 -14.70246 -14.54245 -14.11081 -14.06911 -13.83970 -13.46354 -13.19478 -13.13508 -12.86943 -12.68940 -12.67255 -12.57740 -12.27703 -12.10881 -11.95408 -11.81132 -11.53165 -11.34357 -11.24989 -10.88835 -10.73837 -10.43936 -10.37910 -10.34904 -10.13350 -9.84026 -9.62782 -9.55668 -8.87240 -8.77842 -8.39969 -7.19637 -5.74331 -3.09111 1.52312 1.72899 2.44888 2.77811 2.83227 3.16550 3.42746 3.48536 3.51851 3.89179 4.16540 4.43883 4.61410 4.63640 4.68586 4.71629 4.79603 4.81420 4.98229 4.99058 5.04812 5.09211 5.21663 5.29995 5.36118 5.48011 5.54313 5.57169 5.65638 5.67534 5.71184 5.75135 5.79171 5.91023 5.97794 5.99738 6.01841 6.18508 6.22266 6.29704 6.38584 6.64628 6.85057 7.40025 7.54044 7.82666 8.01697 8.31125 8.44946 9.24524 9.97457 10.17805 11.43927 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009598 B = 0.003863 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2916.567666 B = 7247.253574 C = 9537.752055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.594 5.594 3 C 0.524 3.476 4 O -0.543 6.543 5 C -0.158 4.158 6 C 0.176 3.824 7 N -0.448 5.448 8 N -0.274 5.274 9 C 0.249 3.751 10 N -0.564 5.564 11 C 0.100 3.900 12 C 0.642 3.358 13 O -0.555 6.555 14 C 0.158 3.842 15 H 0.102 0.898 16 C 0.153 3.847 17 N -0.752 5.752 18 C -0.242 4.242 19 H 0.090 0.910 20 C 0.006 3.994 21 N -0.934 5.934 22 Si 0.883 3.117 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.278 1.278 26 C -0.160 4.160 27 C -0.178 4.178 28 C -0.169 4.169 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.103 0.897 33 H 0.097 0.903 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.231 0.769 37 H 0.072 0.928 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.038 0.962 41 H 0.030 0.970 42 H 0.363 0.637 43 H 0.259 0.741 44 H 0.106 0.894 45 H 0.095 0.905 46 H 0.090 0.910 47 H 0.094 0.906 48 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.554 15.168 17.533 24.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.326 5.326 3 C 0.311 3.689 4 O -0.421 6.421 5 C -0.199 4.199 6 C 0.055 3.945 7 N -0.269 5.269 8 N -0.095 5.095 9 C -0.050 4.050 10 N -0.294 5.294 11 C -0.042 4.042 12 C 0.341 3.659 13 O -0.428 6.428 14 C 0.055 3.945 15 H 0.120 0.880 16 C 0.025 3.975 17 N -0.398 5.398 18 C -0.372 4.372 19 H 0.108 0.892 20 C -0.190 4.190 21 N -0.582 5.582 22 Si 0.714 3.286 23 H -0.211 1.211 24 H -0.217 1.217 25 H -0.205 1.205 26 C -0.179 4.179 27 C -0.215 4.215 28 C -0.206 4.206 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.121 0.879 33 H 0.115 0.885 34 H 0.123 0.877 35 H 0.123 0.877 36 H 0.247 0.753 37 H 0.091 0.909 38 H 0.107 0.893 39 H 0.105 0.895 40 H 0.056 0.944 41 H 0.047 0.953 42 H 0.196 0.804 43 H 0.069 0.931 44 H 0.124 0.876 45 H 0.113 0.887 46 H 0.109 0.891 47 H 0.113 0.887 48 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -5.499 14.174 17.380 23.091 hybrid contribution -0.105 1.710 0.438 1.769 sum -5.604 15.884 17.818 24.520 Atomic orbital electron populations 1.21800 0.79570 1.02395 1.02888 1.47617 1.07060 1.05512 1.72418 1.20166 0.87822 0.85005 0.75871 1.90698 1.13699 1.87304 1.50418 1.22054 1.00098 0.92513 1.05249 1.21233 0.91710 0.75584 1.05995 1.49063 1.53411 1.21731 1.02710 1.77118 1.16456 1.04950 1.10939 1.25975 0.98255 0.97939 0.82866 1.45957 1.52887 1.23045 1.07471 1.21804 0.98371 0.88895 0.95175 1.16807 0.81749 0.81486 0.85820 1.91091 1.63387 1.73160 1.15191 1.21002 0.97897 0.82201 0.93424 0.88000 1.20904 0.98513 0.93330 0.84742 1.42649 1.80171 1.14833 1.02143 1.19033 1.36586 0.99857 0.81711 0.89245 1.24636 1.01370 0.97882 0.95091 1.69705 1.54705 1.36934 0.96897 0.86569 0.79316 0.85981 0.76745 1.21058 1.21738 1.20469 1.22511 0.98127 0.99568 0.97724 1.23019 0.99635 1.02915 0.95930 1.22944 1.03697 0.91078 1.02917 0.91375 0.90837 0.91661 0.87866 0.88483 0.87729 0.87677 0.75287 0.90942 0.89325 0.89454 0.94432 0.95256 0.80440 0.93110 0.87595 0.88670 0.89131 0.88736 0.88197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.98 9.37 59.84 0.56 1.54 16 2 N -0.59 -9.42 2.24 -173.94 -0.39 -9.81 16 3 C 0.52 8.91 7.38 -10.98 -0.08 8.82 16 4 O -0.54 -10.83 15.31 5.56 0.09 -10.75 16 5 C -0.16 -2.23 4.58 -27.88 -0.13 -2.35 16 6 C 0.18 2.53 5.68 -4.04 -0.02 2.51 16 7 N -0.45 -6.11 3.63 -65.12 -0.24 -6.35 16 8 N -0.27 -3.31 12.53 29.87 0.37 -2.93 16 9 C 0.25 1.89 12.66 -89.12 -1.13 0.76 16 10 N -0.56 -5.02 3.14 -130.10 -0.41 -5.42 16 11 C 0.10 0.46 11.05 59.85 0.66 1.12 16 12 C 0.64 8.64 8.60 -86.74 -0.75 7.90 16 13 O -0.55 -9.14 17.72 5.08 0.09 -9.05 16 14 C 0.16 2.61 2.42 -67.93 -0.16 2.44 16 15 H 0.10 1.91 6.66 -51.92 -0.35 1.56 16 16 C 0.15 2.99 5.32 -4.04 -0.02 2.97 16 17 N -0.75 -18.45 5.24 -59.91 -0.31 -18.76 16 18 C -0.24 -6.97 10.47 -15.06 -0.16 -7.13 16 19 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 20 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 21 N -0.93 -29.81 13.97 55.49 0.78 -29.03 16 22 Si 0.88 23.34 27.74 -169.99 -4.71 18.63 16 23 H -0.28 -7.62 7.11 56.52 0.40 -7.21 16 24 H -0.29 -7.66 7.11 56.52 0.40 -7.26 16 25 H -0.28 -7.04 6.52 56.52 0.37 -6.67 16 26 C -0.16 -2.07 5.15 -90.62 -0.47 -2.54 16 27 C -0.18 -2.12 10.18 -26.69 -0.27 -2.39 16 28 C -0.17 -1.98 9.80 -26.69 -0.26 -2.24 16 29 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.07 0.81 6.43 -51.93 -0.33 0.47 16 31 H 0.06 0.67 6.44 -51.93 -0.33 0.34 16 32 H 0.10 1.47 8.11 -51.93 -0.42 1.05 16 33 H 0.10 1.21 7.40 -51.93 -0.38 0.83 16 34 H 0.10 1.52 8.07 -51.93 -0.42 1.10 16 35 H 0.10 1.61 8.10 -51.93 -0.42 1.19 16 36 H 0.23 0.46 8.06 -52.49 -0.42 0.03 16 37 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 38 H 0.09 0.11 8.14 -51.93 -0.42 -0.31 16 39 H 0.09 0.48 8.08 -51.93 -0.42 0.06 16 40 H 0.04 0.74 7.47 -51.93 -0.39 0.36 16 41 H 0.03 0.56 7.84 -51.93 -0.41 0.16 16 42 H 0.36 9.10 4.92 -40.82 -0.20 8.89 16 43 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 44 H 0.11 1.24 6.59 -51.93 -0.34 0.90 16 45 H 0.09 1.22 8.05 -51.93 -0.42 0.80 16 46 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 47 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 48 H 0.10 1.24 7.67 -51.93 -0.40 0.85 16 LS Contribution 397.35 15.07 5.99 5.99 Total: -1.00 -39.15 397.35 -8.43 -47.58 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: -7.36 Total: 8.43 kcal Atomic # 6 Polarization: 13.80 SS G_CDS: -2.32 Total: 11.48 kcal Atomic # 7 Polarization: -72.11 SS G_CDS: -0.20 Total: -72.31 kcal Atomic # 8 Polarization: -19.97 SS G_CDS: 0.18 Total: -19.80 kcal Atomic # 14 Polarization: 23.34 SS G_CDS: -4.71 Total: 18.63 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -39.15 -8.43 -47.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277677513.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.858 kcal (2) G-P(sol) polarization free energy of solvation -39.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds