Wall clock time and date at job start Tue Mar 31 2020 21:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.34780 * 120.00111 * 2 1 4 4 O 1.21280 * 120.00423 * 179.97438 * 3 2 1 5 5 C 1.50701 * 119.99795 * 0.02562 * 3 2 1 6 6 C 1.52997 * 109.47212 * 179.97438 * 5 3 2 7 7 N 1.46500 * 109.47473 * 179.97438 * 6 5 3 8 8 N 1.40168 * 126.35097 * 269.68829 * 7 6 5 9 9 C 1.29402 * 108.13900 * 179.87482 * 8 7 6 10 10 N 1.37360 * 108.82958 * 0.38770 * 9 8 7 11 11 C 1.46502 * 125.83129 * 179.77286 * 10 9 8 12 12 C 1.34813 * 108.33314 * 359.74931 * 10 9 8 13 13 O 1.21821 * 126.30167 * 180.02562 * 12 10 9 14 14 C 1.46497 * 120.00322 * 180.02562 * 2 1 3 15 15 H 1.09008 * 109.47432 * 179.97438 * 14 2 1 16 16 C 1.52999 * 109.47308 * 59.99673 * 14 2 1 17 17 N 1.46501 * 109.46913 * 55.00005 * 16 14 2 18 18 C 1.36942 * 119.99739 * 180.02562 * 17 16 14 19 19 H 1.08000 * 120.00357 * 359.97438 * 18 17 16 20 20 C 1.38814 * 119.99736 * 180.02562 * 18 17 16 21 21 N 1.31620 * 119.99894 * 179.97438 * 20 18 17 22 22 Si 1.86798 * 120.00102 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.47455 * 89.99878 * 22 20 18 24 24 H 1.48500 * 109.47265 * 210.00254 * 22 20 18 25 25 H 1.48501 * 109.47046 * 329.99735 * 22 20 18 26 26 C 1.53004 * 109.46754 * 299.99778 * 14 2 1 27 27 C 1.52998 * 117.49656 * 248.74247 * 26 14 2 28 28 C 1.53005 * 117.49686 * 180.08402 * 26 14 2 29 29 H 1.08995 * 109.47620 * 89.99771 * 1 2 3 30 30 H 1.09006 * 109.47028 * 209.99878 * 1 2 3 31 31 H 1.09002 * 109.47109 * 329.99455 * 1 2 3 32 32 H 1.09002 * 109.47060 * 299.99722 * 5 3 2 33 33 H 1.09001 * 109.47380 * 59.99809 * 5 3 2 34 34 H 1.09002 * 109.47153 * 299.99998 * 6 5 3 35 35 H 1.08998 * 109.47533 * 59.99628 * 6 5 3 36 36 H 1.07997 * 125.58211 * 180.13839 * 9 8 7 37 37 H 1.09000 * 109.47004 * 269.97773 * 11 10 9 38 38 H 1.09002 * 109.47297 * 29.97515 * 11 10 9 39 39 H 1.08996 * 109.46806 * 149.97403 * 11 10 9 40 40 H 1.08994 * 109.47411 * 175.00313 * 16 14 2 41 41 H 1.09001 * 109.46956 * 295.00459 * 16 14 2 42 42 H 0.97000 * 120.00106 * 0.02562 * 17 16 14 43 43 H 0.96999 * 119.99561 * 179.97438 * 21 20 18 44 44 H 1.08994 * 115.54948 * 34.41686 * 26 14 2 45 45 H 1.08998 * 117.50238 * 359.97438 * 27 26 14 46 46 H 1.08999 * 117.49714 * 145.02573 * 27 26 14 47 47 H 1.08997 * 117.50074 * 214.98144 * 28 26 14 48 48 H 1.09006 * 117.49987 * 359.97438 * 28 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3516 1.1673 0.0005 5 6 1.3853 2.4723 0.0006 6 6 2.3795 3.6352 0.0011 7 7 1.6470 4.9040 0.0011 8 7 1.2373 5.6268 -1.1279 9 6 0.6184 6.6888 -0.7235 10 7 0.6101 6.7012 0.6500 11 6 0.0112 7.7376 1.4947 12 6 1.2468 5.5965 1.0879 13 8 1.4271 5.2812 2.2507 14 6 2.1975 -1.2687 -0.0006 15 1 3.2692 -1.0695 -0.0009 16 6 1.8279 -2.0705 -1.2501 17 7 2.0706 -1.2553 -2.4429 18 6 1.8102 -1.7666 -3.6863 19 1 1.4263 -2.7710 -3.7876 20 6 2.0406 -0.9944 -4.8165 21 7 1.7908 -1.4860 -6.0116 22 14 2.7066 0.7420 -4.6414 23 1 4.1910 0.7078 -4.6661 24 1 2.2120 1.5776 -5.7650 25 1 2.2462 1.3213 -3.3539 26 6 1.8279 -2.0715 1.2484 27 6 2.9088 -2.2553 2.3154 28 6 2.4944 -3.4361 1.4339 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8899 0.5139 32 1 0.7583 2.5303 -0.8892 33 1 0.7589 2.5299 0.8908 34 1 3.0062 3.5771 0.8911 35 1 3.0062 3.5780 -0.8888 36 1 0.1835 7.4439 -1.3615 37 1 0.7529 8.5081 1.7053 38 1 -0.8381 8.1827 0.9765 39 1 -0.3267 7.2929 2.4307 40 1 2.4376 -2.9727 -1.2964 41 1 0.7741 -2.3459 -1.2065 42 1 2.4157 -0.3533 -2.3519 43 1 1.9515 -0.9462 -6.8013 44 1 0.7979 -1.9640 1.5885 45 1 3.8834 -1.8048 2.1275 46 1 2.5899 -2.2693 3.3577 47 1 1.9031 -4.2264 1.8964 48 1 3.1959 -3.7622 0.6659 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277677513.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:12:01 Heat of formation + Delta-G solvation = 38.139598 kcal Electronic energy + Delta-G solvation = -30122.984086 eV Core-core repulsion = 26023.165481 eV Total energy + Delta-G solvation = -4099.818604 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.44878 -41.37214 -38.98187 -38.44234 -36.79022 -36.65124 -35.88122 -33.95129 -33.42205 -31.29592 -30.04139 -28.33473 -27.81981 -26.37483 -25.34659 -23.69491 -23.31352 -22.84562 -22.21583 -21.39460 -20.36333 -19.56784 -18.97161 -18.05099 -17.90027 -17.42712 -17.28729 -16.82203 -16.60485 -16.55924 -15.99306 -15.78473 -15.37991 -15.26427 -15.00878 -14.75188 -14.53892 -14.37164 -13.98468 -13.93781 -13.71685 -13.59877 -13.50397 -13.34842 -13.09981 -13.04424 -12.89649 -12.84705 -12.49424 -12.37900 -12.24632 -12.09041 -11.86857 -11.41395 -11.37730 -11.15563 -11.08044 -10.95872 -10.83951 -9.71391 -9.68777 -9.33487 -8.07608 -5.39039 0.67667 1.05870 1.29454 1.34208 1.38328 1.46778 1.51485 1.88854 2.23865 2.41130 2.86613 3.24651 3.35849 3.41443 3.51154 3.67400 3.88071 3.92280 3.96123 4.03895 4.08480 4.15982 4.22085 4.25157 4.31653 4.37556 4.50364 4.52525 4.57262 4.60144 4.70253 4.77568 4.80802 4.84783 4.90970 4.92544 5.02591 5.04581 5.05814 5.22198 5.28128 5.53235 5.65670 5.72038 6.16946 6.28872 6.59903 6.89751 7.01842 7.02669 7.79613 7.97605 9.13902 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009598 B = 0.003863 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2916.567666 B = 7247.253574 C = 9537.752055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.596 5.596 3 C 0.514 3.486 4 O -0.581 6.581 5 C -0.143 4.143 6 C 0.180 3.820 7 N -0.458 5.458 8 N -0.325 5.325 9 C 0.282 3.718 10 N -0.557 5.557 11 C 0.092 3.908 12 C 0.628 3.372 13 O -0.596 6.596 14 C 0.166 3.834 15 H 0.075 0.925 16 C 0.152 3.848 17 N -0.756 5.756 18 C -0.227 4.227 19 H 0.065 0.935 20 C -0.053 4.053 21 N -0.978 5.978 22 Si 0.943 3.057 23 H -0.290 1.290 24 H -0.287 1.287 25 H -0.265 1.265 26 C -0.165 4.165 27 C -0.172 4.172 28 C -0.162 4.162 29 H 0.050 0.950 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.104 0.896 33 H 0.115 0.885 34 H 0.094 0.906 35 H 0.089 0.911 36 H 0.290 0.710 37 H 0.084 0.916 38 H 0.132 0.868 39 H 0.074 0.926 40 H 0.036 0.964 41 H 0.041 0.959 42 H 0.360 0.640 43 H 0.258 0.742 44 H 0.128 0.872 45 H 0.079 0.921 46 H 0.113 0.887 47 H 0.119 0.881 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.506 17.230 19.147 27.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.327 5.327 3 C 0.303 3.697 4 O -0.462 6.462 5 C -0.183 4.183 6 C 0.058 3.942 7 N -0.278 5.278 8 N -0.146 5.146 9 C -0.016 4.016 10 N -0.285 5.285 11 C -0.048 4.048 12 C 0.327 3.673 13 O -0.473 6.473 14 C 0.062 3.938 15 H 0.093 0.907 16 C 0.025 3.975 17 N -0.401 5.401 18 C -0.358 4.358 19 H 0.083 0.917 20 C -0.245 4.245 21 N -0.628 5.628 22 Si 0.772 3.228 23 H -0.217 1.217 24 H -0.213 1.213 25 H -0.191 1.191 26 C -0.185 4.185 27 C -0.209 4.209 28 C -0.200 4.200 29 H 0.068 0.932 30 H 0.114 0.886 31 H 0.111 0.889 32 H 0.123 0.877 33 H 0.133 0.867 34 H 0.112 0.888 35 H 0.107 0.893 36 H 0.305 0.695 37 H 0.103 0.897 38 H 0.150 0.850 39 H 0.093 0.907 40 H 0.054 0.946 41 H 0.059 0.941 42 H 0.193 0.807 43 H 0.067 0.933 44 H 0.146 0.854 45 H 0.098 0.902 46 H 0.131 0.869 47 H 0.137 0.863 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -7.503 16.262 19.031 26.132 hybrid contribution 0.460 1.069 -0.039 1.164 sum -7.043 17.330 18.992 26.658 Atomic orbital electron populations 1.22005 0.77499 1.04965 1.02490 1.47768 1.08377 1.04927 1.71581 1.20706 0.87620 0.86133 0.75255 1.90676 1.15409 1.87902 1.52172 1.21936 0.99659 0.90725 1.06005 1.20976 0.91821 0.76704 1.04684 1.48969 1.53575 1.21656 1.03568 1.77136 1.19663 1.07096 1.10699 1.27159 0.94915 0.96976 0.82523 1.46193 1.51585 1.22216 1.08473 1.22189 1.00008 0.87802 0.94809 1.17078 0.82262 0.82700 0.85244 1.91043 1.65119 1.74457 1.16703 1.20765 0.96608 0.82705 0.93673 0.90711 1.21086 0.98949 0.93164 0.84319 1.42701 1.79981 1.15161 1.02274 1.19045 1.34566 0.98686 0.83458 0.91684 1.25283 1.02725 1.01610 0.94889 1.69840 1.56838 1.38504 0.97667 0.85596 0.78052 0.81842 0.77281 1.21740 1.21267 1.19059 1.22437 0.99527 1.00012 0.96490 1.23046 0.98492 1.02500 0.96833 1.23024 1.03273 0.91206 1.02479 0.93161 0.88581 0.88946 0.87737 0.86668 0.88816 0.89267 0.69540 0.89724 0.84969 0.90741 0.94574 0.94109 0.80719 0.93251 0.85447 0.90230 0.86886 0.86291 0.89483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.69 9.37 127.77 1.20 2.89 16 2 N -0.60 -18.34 2.24 -822.60 -1.85 -20.18 16 3 C 0.51 17.45 7.38 87.66 0.65 18.10 16 4 O -0.58 -23.79 15.31 -3.03 -0.05 -23.84 16 5 C -0.14 -3.94 4.58 29.85 0.14 -3.81 16 6 C 0.18 5.31 5.68 86.38 0.49 5.80 16 7 N -0.46 -12.29 3.63 -478.02 -1.73 -14.03 16 8 N -0.32 -7.28 12.53 -59.42 -0.74 -8.02 16 9 C 0.28 3.27 12.66 179.82 2.28 5.55 16 10 N -0.56 -8.44 3.14 -683.68 -2.15 -10.59 16 11 C 0.09 0.54 11.05 127.77 1.41 1.95 16 12 C 0.63 16.46 8.60 178.99 1.54 18.00 16 13 O -0.60 -19.80 17.72 -4.74 -0.08 -19.88 16 14 C 0.17 5.40 2.42 44.99 0.11 5.51 16 15 H 0.07 2.86 6.66 -2.38 -0.02 2.85 16 16 C 0.15 5.87 5.32 86.38 0.46 6.33 16 17 N -0.76 -37.22 5.24 -343.45 -1.80 -39.02 16 18 C -0.23 -13.24 10.47 84.03 0.88 -12.36 16 19 H 0.07 4.07 8.06 -2.91 -0.02 4.05 16 20 C -0.05 -3.23 5.50 84.86 0.47 -2.76 16 21 N -0.98 -63.60 13.97 21.65 0.30 -63.30 16 22 Si 0.94 49.05 27.74 68.60 1.90 50.96 16 23 H -0.29 -15.32 7.11 99.48 0.71 -14.61 16 24 H -0.29 -14.60 7.11 99.48 0.71 -13.89 16 25 H -0.27 -13.03 6.52 99.48 0.65 -12.38 16 26 C -0.17 -3.97 5.15 -10.79 -0.06 -4.02 16 27 C -0.17 -3.78 10.18 30.62 0.31 -3.47 16 28 C -0.16 -3.49 9.80 30.62 0.30 -3.19 16 29 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.10 1.80 6.43 -2.38 -0.02 1.79 16 31 H 0.09 1.66 6.44 -2.39 -0.02 1.64 16 32 H 0.10 2.88 8.11 -2.39 -0.02 2.86 16 33 H 0.12 2.73 7.40 -2.39 -0.02 2.71 16 34 H 0.09 2.88 8.07 -2.39 -0.02 2.87 16 35 H 0.09 2.85 8.10 -2.39 -0.02 2.83 16 36 H 0.29 -0.58 8.06 -2.91 -0.02 -0.60 16 37 H 0.08 0.34 8.14 -2.39 -0.02 0.32 16 38 H 0.13 -0.35 8.14 -2.39 -0.02 -0.37 16 39 H 0.07 0.68 8.08 -2.39 -0.02 0.66 16 40 H 0.04 1.43 7.47 -2.39 -0.02 1.41 16 41 H 0.04 1.52 7.84 -2.39 -0.02 1.50 16 42 H 0.36 18.09 4.92 -92.71 -0.46 17.63 16 43 H 0.26 16.04 8.31 -92.71 -0.77 15.27 16 44 H 0.13 2.54 6.59 -2.39 -0.02 2.52 16 45 H 0.08 2.01 8.05 -2.39 -0.02 1.99 16 46 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 47 H 0.12 2.00 8.14 -2.39 -0.02 1.98 16 48 H 0.09 2.10 7.67 -2.38 -0.02 2.08 16 Total: -1.00 -89.38 397.35 4.43 -84.94 By element: Atomic # 1 Polarization: 27.98 SS G_CDS: 0.46 Total: 28.44 kcal Atomic # 6 Polarization: 24.34 SS G_CDS: 10.17 Total: 34.52 kcal Atomic # 7 Polarization: -147.17 SS G_CDS: -7.97 Total: -155.14 kcal Atomic # 8 Polarization: -43.59 SS G_CDS: -0.13 Total: -43.72 kcal Atomic # 14 Polarization: 49.05 SS G_CDS: 1.90 Total: 50.96 kcal Total: -89.38 4.43 -84.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277677513.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.081 kcal (2) G-P(sol) polarization free energy of solvation -89.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds