Wall clock time and date at job start Tue Mar 31 2020 21:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46500 * 119.99749 * 2 1 4 4 C 1.38396 * 120.00286 * 179.72097 * 2 1 3 5 5 C 1.39889 * 119.99641 * 4.72720 * 4 2 1 6 6 N 1.31460 * 120.01303 * 179.70740 * 5 4 2 7 7 C 1.33279 * 120.00907 * 0.56269 * 6 5 4 8 8 C 1.47814 * 120.00431 * 179.72717 * 7 6 5 9 9 O 1.21559 * 120.00162 * 172.37094 * 8 7 6 10 10 N 1.34774 * 119.99747 * 352.37620 * 8 7 6 11 11 C 1.46504 * 120.00305 * 2.46000 * 10 8 7 12 12 C 1.46504 * 119.99817 * 182.46398 * 10 8 7 13 13 C 1.53002 * 109.47425 * 89.99700 * 12 10 8 14 14 H 1.09004 * 109.47030 * 59.99785 * 13 12 10 15 15 O 1.42905 * 109.46931 * 300.00093 * 13 12 10 16 16 C 1.53001 * 109.47383 * 179.97438 * 13 12 10 17 17 N 1.46496 * 109.47143 * 184.99824 * 16 13 12 18 18 C 1.46500 * 119.99716 * 90.00451 * 17 16 13 19 19 C 1.36927 * 120.00077 * 269.99992 * 17 16 13 20 20 H 1.08000 * 120.00123 * 32.64018 * 19 17 16 21 21 C 1.38816 * 120.00088 * 212.64212 * 19 17 16 22 22 N 1.31617 * 120.00047 * 6.15728 * 21 19 17 23 23 Si 1.86803 * 120.00087 * 186.16413 * 21 19 17 24 24 H 1.48498 * 109.47138 * 89.99539 * 23 21 19 25 25 H 1.48498 * 109.46889 * 209.99942 * 23 21 19 26 26 H 1.48507 * 109.46878 * 329.99778 * 23 21 19 27 27 C 1.39412 * 119.99624 * 359.71276 * 7 6 5 28 28 N 1.32053 * 119.98251 * 359.97438 * 27 7 6 29 29 H 1.08995 * 109.47141 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.46699 * 120.00362 * 1 2 3 31 31 H 1.08999 * 109.46609 * 240.00373 * 1 2 3 32 32 H 1.09000 * 109.47692 * 90.00026 * 3 2 1 33 33 H 1.09008 * 109.47144 * 209.99674 * 3 2 1 34 34 H 1.08999 * 109.47265 * 329.99504 * 3 2 1 35 35 H 1.08002 * 119.99531 * 359.97438 * 5 4 2 36 36 H 1.08990 * 109.47158 * 83.72358 * 11 10 8 37 37 H 1.09000 * 109.47171 * 203.72462 * 11 10 8 38 38 H 1.09003 * 109.46555 * 323.72323 * 11 10 8 39 39 H 1.09002 * 109.47191 * 209.99632 * 12 10 8 40 40 H 1.08995 * 109.47103 * 329.99352 * 12 10 8 41 41 H 0.96696 * 113.99607 * 299.99935 * 15 13 12 42 42 H 1.09002 * 109.46551 * 305.00131 * 16 13 12 43 43 H 1.09000 * 109.46891 * 64.99467 * 16 13 12 44 44 H 1.08996 * 109.47678 * 85.17696 * 18 17 16 45 45 H 1.09006 * 109.46993 * 205.18563 * 18 17 16 46 46 H 1.09000 * 109.47349 * 325.17445 * 18 17 16 47 47 H 0.97002 * 120.00458 * 180.02562 * 22 21 19 48 48 H 1.07998 * 120.01144 * 179.97438 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1571 -1.1985 0.0058 5 6 1.4612 -2.4084 -0.0881 6 7 2.1186 -3.5468 -0.0884 7 6 3.4476 -3.5491 0.0121 8 6 4.1862 -4.8294 0.0179 9 8 5.4009 -4.8306 -0.0305 10 7 3.5130 -5.9955 0.0766 11 6 2.0480 -5.9961 0.0804 12 6 4.2462 -7.2624 0.1368 13 6 4.5052 -7.6329 1.5985 14 1 3.5541 -7.7384 2.1206 15 8 5.2786 -6.6049 2.2207 16 6 5.2704 -8.9563 1.6614 17 7 5.4140 -9.3714 3.0590 18 6 4.3911 -10.2157 3.6811 19 6 6.5044 -8.9704 3.7837 20 1 6.9572 -8.0091 3.5907 21 6 7.0278 -9.7994 4.7664 22 7 6.5545 -11.0179 4.9201 23 14 8.4038 -9.1857 5.8707 24 1 7.8216 -8.5403 7.0747 25 1 9.2540 -10.3306 6.2848 26 1 9.2296 -8.1982 5.1302 27 6 4.1411 -2.3438 0.1116 28 7 3.4809 -1.2001 0.1056 29 1 -0.3633 1.0276 -0.0005 30 1 -0.3633 -0.5139 -0.8900 31 1 -0.3632 -0.5138 0.8900 32 1 2.3792 1.5835 1.0276 33 1 3.1500 1.1384 -0.5138 34 1 1.6084 2.0284 -0.5139 35 1 0.3839 -2.4071 -0.1648 36 1 1.6820 -5.9340 -0.9444 37 1 1.6862 -6.9158 0.5402 38 1 1.6858 -5.1391 0.6482 39 1 3.6563 -8.0465 -0.3377 40 1 5.1972 -7.1569 -0.3852 41 1 6.1399 -6.4560 1.8072 42 1 4.7215 -9.7198 1.1101 43 1 6.2574 -8.8267 1.2175 44 1 4.6005 -11.2624 3.4608 45 1 4.4007 -10.0625 4.7603 46 1 3.4108 -9.9501 3.2854 47 1 6.9200 -11.5971 5.6071 48 1 5.2180 -2.3453 0.1935 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284492647.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:17 Heat of formation + Delta-G solvation = 27.092259 kcal Electronic energy + Delta-G solvation = -29589.625270 eV Core-core repulsion = 25489.327617 eV Total energy + Delta-G solvation = -4100.297653 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.49754 -39.53356 -37.48083 -36.95851 -35.39480 -34.52744 -34.05412 -31.41206 -31.14229 -29.45130 -28.92788 -26.93923 -26.74229 -25.75885 -25.10337 -24.40779 -22.88290 -21.86098 -20.36163 -19.94140 -18.19147 -17.85425 -17.09789 -16.72347 -16.21162 -15.98311 -15.67421 -15.41057 -15.07648 -14.91266 -14.77037 -14.41892 -14.26269 -14.04395 -13.39402 -13.26081 -13.17646 -13.12723 -12.97588 -12.84228 -12.69771 -12.64981 -12.48717 -11.82358 -11.59059 -11.49674 -11.00580 -10.92065 -10.78282 -10.53647 -10.49005 -10.38010 -10.29404 -10.10201 -9.84316 -9.81675 -9.56044 -9.10533 -8.47262 -8.28500 -8.09188 -6.44233 -5.62871 -3.14633 0.46363 0.88865 2.27962 2.81350 3.09290 3.47398 3.52797 3.55860 3.72424 3.91358 3.99156 4.10456 4.47915 4.60296 4.67174 4.73152 4.78462 4.95173 5.06076 5.11698 5.14795 5.23628 5.29604 5.37341 5.39874 5.53953 5.57152 5.68693 5.79033 5.87207 5.99499 6.09647 6.17975 6.21304 6.21782 6.58583 6.60993 6.72395 6.83018 6.92937 7.08527 7.41705 7.44442 7.60133 7.74385 7.99854 8.29817 8.52497 8.62540 9.37521 9.97218 10.51647 11.43789 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.018597 B = 0.002386 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.231051 B =11734.234877 C =12368.418489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.602 5.602 3 C 0.094 3.906 4 C 0.368 3.632 5 C -0.013 4.013 6 N -0.368 5.368 7 C -0.039 4.039 8 C 0.585 3.415 9 O -0.536 6.536 10 N -0.589 5.589 11 C 0.080 3.920 12 C 0.080 3.920 13 C 0.073 3.927 14 H 0.085 0.915 15 O -0.543 6.543 16 C 0.125 3.875 17 N -0.591 5.591 18 C 0.162 3.838 19 C -0.242 4.242 20 H 0.068 0.932 21 C 0.001 3.999 22 N -0.911 5.911 23 Si 0.904 3.096 24 H -0.289 1.289 25 H -0.292 1.292 26 H -0.278 1.278 27 C 0.172 3.828 28 N -0.507 5.507 29 H 0.084 0.916 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.054 0.946 33 H 0.079 0.921 34 H 0.068 0.932 35 H 0.169 0.831 36 H 0.052 0.948 37 H 0.059 0.941 38 H 0.100 0.900 39 H 0.081 0.919 40 H 0.085 0.915 41 H 0.368 0.632 42 H 0.041 0.959 43 H 0.052 0.948 44 H 0.019 0.981 45 H 0.049 0.951 46 H -0.009 1.009 47 H 0.251 0.749 48 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.120 21.608 -14.467 30.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.314 5.314 3 C -0.049 4.049 4 C 0.128 3.872 5 C -0.184 4.184 6 N -0.084 5.084 7 C -0.180 4.180 8 C 0.372 3.628 9 O -0.413 6.413 10 N -0.320 5.320 11 C -0.063 4.063 12 C -0.044 4.044 13 C 0.009 3.991 14 H 0.102 0.898 15 O -0.347 6.347 16 C -0.004 4.004 17 N -0.313 5.313 18 C 0.018 3.982 19 C -0.372 4.372 20 H 0.085 0.915 21 C -0.196 4.196 22 N -0.556 5.556 23 Si 0.735 3.265 24 H -0.216 1.216 25 H -0.219 1.219 26 H -0.204 1.204 27 C 0.011 3.989 28 N -0.229 5.229 29 H 0.102 0.898 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.098 0.902 34 H 0.087 0.913 35 H 0.186 0.814 36 H 0.070 0.930 37 H 0.078 0.922 38 H 0.118 0.882 39 H 0.100 0.900 40 H 0.104 0.896 41 H 0.215 0.785 42 H 0.059 0.941 43 H 0.070 0.930 44 H 0.038 0.962 45 H 0.068 0.932 46 H 0.009 0.991 47 H 0.061 0.939 48 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -16.018 21.616 -13.976 30.318 hybrid contribution 0.886 0.184 0.390 0.985 sum -15.132 21.800 -13.585 29.813 Atomic orbital electron populations 1.21835 0.77593 1.03712 1.02144 1.46207 1.05662 1.03097 1.76404 1.21718 0.97677 0.83496 1.01976 1.19611 0.89877 0.87501 0.90207 1.23281 1.01432 0.86889 1.06805 1.68677 1.07737 1.27144 1.04891 1.21759 0.90549 0.95839 1.09806 1.17368 0.86323 0.82375 0.76753 1.90756 1.12748 1.86619 1.51155 1.47536 1.07504 1.05674 1.71299 1.22269 0.78707 1.03386 1.01966 1.22458 0.97895 0.84255 0.99755 1.23140 0.95921 0.90207 0.89799 0.89753 1.86541 1.32694 1.56268 1.59230 1.21346 0.98057 0.92950 0.88045 1.43641 1.22779 1.58824 1.06046 1.20743 0.86508 0.93576 0.97413 1.19196 1.04878 0.98605 1.14532 0.91450 1.25273 0.98330 0.95011 1.01033 1.70015 1.44134 1.06638 1.34806 0.86253 0.82023 0.77489 0.80770 1.21605 1.21881 1.20352 1.23509 1.01685 0.85819 0.87928 1.68132 1.06282 1.29649 1.18878 0.89754 0.91764 0.91741 0.92773 0.90205 0.91306 0.81441 0.92954 0.92177 0.88219 0.90028 0.89616 0.78488 0.94083 0.92973 0.96236 0.93196 0.99101 0.93907 0.80075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.29 9.40 59.85 0.56 0.85 16 2 N -0.60 -4.10 3.37 -189.51 -0.64 -4.74 16 3 C 0.09 0.53 10.38 59.85 0.62 1.15 16 4 C 0.37 3.60 7.36 -155.01 -1.14 2.45 16 5 C -0.01 -0.12 10.49 -17.09 -0.18 -0.30 16 6 N -0.37 -4.28 6.20 -9.44 -0.06 -4.34 16 7 C -0.04 -0.53 6.61 -82.89 -0.55 -1.08 16 8 C 0.59 9.22 7.12 -12.34 -0.09 9.13 16 9 O -0.54 -9.62 14.88 -0.06 0.00 -9.62 16 10 N -0.59 -8.55 2.83 -182.70 -0.52 -9.07 16 11 C 0.08 0.93 9.32 59.85 0.56 1.49 16 12 C 0.08 1.18 5.13 -4.04 -0.02 1.16 16 13 C 0.07 1.34 3.48 -26.73 -0.09 1.25 16 14 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 15 O -0.54 -11.42 11.29 -40.60 -0.46 -11.88 16 16 C 0.12 2.60 5.37 -4.04 -0.02 2.57 16 17 N -0.59 -15.39 2.87 -181.12 -0.52 -15.91 16 18 C 0.16 4.14 9.00 59.85 0.54 4.68 16 19 C -0.24 -6.92 9.17 -15.06 -0.14 -7.06 16 20 H 0.07 1.93 7.35 -52.49 -0.39 1.54 16 21 C 0.00 0.04 5.16 -17.43 -0.09 -0.05 16 22 N -0.91 -27.54 11.04 55.49 0.61 -26.92 16 23 Si 0.90 22.95 29.56 -169.99 -5.02 17.93 16 24 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 25 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 26 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 27 C 0.17 2.18 10.76 -17.02 -0.18 2.00 16 28 N -0.51 -5.94 9.31 -11.96 -0.11 -6.05 16 29 H 0.08 0.11 7.79 -51.93 -0.40 -0.29 16 30 H 0.06 0.15 7.76 -51.93 -0.40 -0.26 16 31 H 0.06 0.19 8.09 -51.93 -0.42 -0.23 16 32 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.08 0.56 7.46 -51.92 -0.39 0.17 16 34 H 0.07 0.21 7.92 -51.93 -0.41 -0.20 16 35 H 0.17 0.97 6.71 -52.49 -0.35 0.62 16 36 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.65 8.02 -51.93 -0.42 0.23 16 38 H 0.10 1.20 5.25 -52.05 -0.27 0.92 16 39 H 0.08 1.01 8.07 -51.93 -0.42 0.59 16 40 H 0.09 1.32 7.39 -51.93 -0.38 0.93 16 41 H 0.37 7.35 8.53 45.56 0.39 7.74 16 42 H 0.04 0.78 8.07 -51.93 -0.42 0.36 16 43 H 0.05 1.09 8.04 -51.93 -0.42 0.68 16 44 H 0.02 0.52 7.74 -51.93 -0.40 0.12 16 45 H 0.05 1.38 7.17 -51.93 -0.37 1.01 16 46 H -0.01 -0.21 8.11 -51.93 -0.42 -0.63 16 47 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 48 H 0.18 2.17 7.65 -52.49 -0.40 1.77 16 LS Contribution 391.27 15.07 5.90 5.90 Total: -1.00 -35.89 391.27 -7.75 -43.64 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -6.71 Total: 2.83 kcal Atomic # 6 Polarization: 18.47 SS G_CDS: -0.22 Total: 18.24 kcal Atomic # 7 Polarization: -65.80 SS G_CDS: -1.23 Total: -67.03 kcal Atomic # 8 Polarization: -21.04 SS G_CDS: -0.46 Total: -21.50 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -5.02 Total: 17.93 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -35.89 -7.75 -43.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284492647.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.736 kcal (2) G-P(sol) polarization free energy of solvation -35.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds