Wall clock time and date at job start Tue Mar 31 2020 21:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46500 * 119.99749 * 2 1 4 4 C 1.38396 * 120.00286 * 179.72097 * 2 1 3 5 5 C 1.39889 * 119.99641 * 4.72720 * 4 2 1 6 6 N 1.31460 * 120.01303 * 179.70740 * 5 4 2 7 7 C 1.33279 * 120.00907 * 0.56269 * 6 5 4 8 8 C 1.47814 * 120.00431 * 179.72717 * 7 6 5 9 9 O 1.21559 * 120.00162 * 172.37094 * 8 7 6 10 10 N 1.34774 * 119.99747 * 352.37620 * 8 7 6 11 11 C 1.46504 * 120.00305 * 2.46000 * 10 8 7 12 12 C 1.46504 * 119.99817 * 182.46398 * 10 8 7 13 13 C 1.53002 * 109.47425 * 89.99700 * 12 10 8 14 14 H 1.09004 * 109.47030 * 59.99785 * 13 12 10 15 15 O 1.42905 * 109.46931 * 300.00093 * 13 12 10 16 16 C 1.53001 * 109.47383 * 179.97438 * 13 12 10 17 17 N 1.46496 * 109.47143 * 184.99824 * 16 13 12 18 18 C 1.46500 * 119.99716 * 90.00451 * 17 16 13 19 19 C 1.36927 * 120.00077 * 269.99992 * 17 16 13 20 20 H 1.08000 * 120.00123 * 32.64018 * 19 17 16 21 21 C 1.38816 * 120.00088 * 212.64212 * 19 17 16 22 22 N 1.31617 * 120.00047 * 6.15728 * 21 19 17 23 23 Si 1.86803 * 120.00087 * 186.16413 * 21 19 17 24 24 H 1.48498 * 109.47138 * 89.99539 * 23 21 19 25 25 H 1.48498 * 109.46889 * 209.99942 * 23 21 19 26 26 H 1.48507 * 109.46878 * 329.99778 * 23 21 19 27 27 C 1.39412 * 119.99624 * 359.71276 * 7 6 5 28 28 N 1.32053 * 119.98251 * 359.97438 * 27 7 6 29 29 H 1.08995 * 109.47141 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.46699 * 120.00362 * 1 2 3 31 31 H 1.08999 * 109.46609 * 240.00373 * 1 2 3 32 32 H 1.09000 * 109.47692 * 90.00026 * 3 2 1 33 33 H 1.09008 * 109.47144 * 209.99674 * 3 2 1 34 34 H 1.08999 * 109.47265 * 329.99504 * 3 2 1 35 35 H 1.08002 * 119.99531 * 359.97438 * 5 4 2 36 36 H 1.08990 * 109.47158 * 83.72358 * 11 10 8 37 37 H 1.09000 * 109.47171 * 203.72462 * 11 10 8 38 38 H 1.09003 * 109.46555 * 323.72323 * 11 10 8 39 39 H 1.09002 * 109.47191 * 209.99632 * 12 10 8 40 40 H 1.08995 * 109.47103 * 329.99352 * 12 10 8 41 41 H 0.96696 * 113.99607 * 299.99935 * 15 13 12 42 42 H 1.09002 * 109.46551 * 305.00131 * 16 13 12 43 43 H 1.09000 * 109.46891 * 64.99467 * 16 13 12 44 44 H 1.08996 * 109.47678 * 85.17696 * 18 17 16 45 45 H 1.09006 * 109.46993 * 205.18563 * 18 17 16 46 46 H 1.09000 * 109.47349 * 325.17445 * 18 17 16 47 47 H 0.97002 * 120.00458 * 180.02562 * 22 21 19 48 48 H 1.07998 * 120.01144 * 179.97438 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1571 -1.1985 0.0058 5 6 1.4612 -2.4084 -0.0881 6 7 2.1186 -3.5468 -0.0884 7 6 3.4476 -3.5491 0.0121 8 6 4.1862 -4.8294 0.0179 9 8 5.4009 -4.8306 -0.0305 10 7 3.5130 -5.9955 0.0766 11 6 2.0480 -5.9961 0.0804 12 6 4.2462 -7.2624 0.1368 13 6 4.5052 -7.6329 1.5985 14 1 3.5541 -7.7384 2.1206 15 8 5.2786 -6.6049 2.2207 16 6 5.2704 -8.9563 1.6614 17 7 5.4140 -9.3714 3.0590 18 6 4.3911 -10.2157 3.6811 19 6 6.5044 -8.9704 3.7837 20 1 6.9572 -8.0091 3.5907 21 6 7.0278 -9.7994 4.7664 22 7 6.5545 -11.0179 4.9201 23 14 8.4038 -9.1857 5.8707 24 1 7.8216 -8.5403 7.0747 25 1 9.2540 -10.3306 6.2848 26 1 9.2296 -8.1982 5.1302 27 6 4.1411 -2.3438 0.1116 28 7 3.4809 -1.2001 0.1056 29 1 -0.3633 1.0276 -0.0005 30 1 -0.3633 -0.5139 -0.8900 31 1 -0.3632 -0.5138 0.8900 32 1 2.3792 1.5835 1.0276 33 1 3.1500 1.1384 -0.5138 34 1 1.6084 2.0284 -0.5139 35 1 0.3839 -2.4071 -0.1648 36 1 1.6820 -5.9340 -0.9444 37 1 1.6862 -6.9158 0.5402 38 1 1.6858 -5.1391 0.6482 39 1 3.6563 -8.0465 -0.3377 40 1 5.1972 -7.1569 -0.3852 41 1 6.1399 -6.4560 1.8072 42 1 4.7215 -9.7198 1.1101 43 1 6.2574 -8.8267 1.2175 44 1 4.6005 -11.2624 3.4608 45 1 4.4007 -10.0625 4.7603 46 1 3.4108 -9.9501 3.2854 47 1 6.9200 -11.5971 5.6071 48 1 5.2180 -2.3453 0.1935 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284492647.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:15 Heat of formation + Delta-G solvation = 1.385743 kcal Electronic energy + Delta-G solvation = -29590.739988 eV Core-core repulsion = 25489.327617 eV Total energy + Delta-G solvation = -4101.412371 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.33047 -40.64121 -38.73984 -37.90581 -36.78393 -36.12399 -35.01840 -33.31740 -32.14598 -30.91819 -29.32815 -28.12336 -27.81951 -27.69884 -26.29831 -25.21832 -24.05574 -23.07388 -22.12130 -21.02894 -19.10458 -18.71214 -18.50191 -18.05666 -17.51442 -17.01076 -16.81818 -16.73246 -16.38065 -15.99427 -15.92149 -15.40445 -15.38377 -15.21965 -15.00714 -14.77400 -14.44956 -14.16100 -13.89230 -13.69551 -13.64994 -13.47888 -13.27243 -13.11010 -12.84754 -12.81202 -12.64397 -12.48907 -12.40421 -12.24125 -12.14904 -11.84843 -11.82524 -11.75609 -11.26070 -11.14320 -11.08966 -10.56524 -10.00584 -9.53519 -8.78752 -8.51633 -7.81489 -5.35890 -0.40856 0.08531 1.44691 1.45724 1.55276 1.71344 1.77814 2.05854 2.51998 2.80767 3.05642 3.24033 3.33283 3.41521 3.58685 3.74329 3.84170 4.04529 4.11347 4.21666 4.28527 4.42044 4.47058 4.50868 4.51948 4.53952 4.64632 4.73538 4.74895 4.86617 4.88340 4.92291 4.92893 4.98502 5.03358 5.26208 5.30020 5.36963 5.62669 5.64533 5.67290 5.73423 5.95106 6.30994 6.40618 6.44361 6.76650 6.96481 7.17518 7.21668 7.89797 8.37432 9.22314 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.018597 B = 0.002386 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.231051 B =11734.234877 C =12368.418489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.593 5.593 3 C 0.089 3.911 4 C 0.364 3.636 5 C 0.000 4.000 6 N -0.372 5.372 7 C -0.069 4.069 8 C 0.577 3.423 9 O -0.572 6.572 10 N -0.592 5.592 11 C 0.080 3.920 12 C 0.090 3.910 13 C 0.084 3.916 14 H 0.077 0.923 15 O -0.564 6.564 16 C 0.123 3.877 17 N -0.611 5.611 18 C 0.175 3.825 19 C -0.246 4.246 20 H 0.062 0.938 21 C -0.054 4.054 22 N -0.939 5.939 23 Si 0.965 3.035 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.271 1.271 27 C 0.166 3.834 28 N -0.527 5.527 29 H 0.107 0.893 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.053 0.947 33 H 0.062 0.938 34 H 0.100 0.900 35 H 0.207 0.793 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.098 0.902 39 H 0.114 0.886 40 H 0.078 0.922 41 H 0.370 0.630 42 H 0.066 0.934 43 H 0.046 0.954 44 H 0.000 1.000 45 H 0.018 0.982 46 H 0.027 0.973 47 H 0.247 0.753 48 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.756 23.462 -15.610 33.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.303 5.303 3 C -0.053 4.053 4 C 0.122 3.878 5 C -0.174 4.174 6 N -0.088 5.088 7 C -0.207 4.207 8 C 0.365 3.635 9 O -0.451 6.451 10 N -0.322 5.322 11 C -0.062 4.062 12 C -0.033 4.033 13 C 0.022 3.978 14 H 0.095 0.905 15 O -0.369 6.369 16 C -0.004 4.004 17 N -0.334 5.334 18 C 0.030 3.970 19 C -0.377 4.377 20 H 0.080 0.920 21 C -0.248 4.248 22 N -0.586 5.586 23 Si 0.794 3.206 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.196 1.196 27 C 0.005 3.995 28 N -0.251 5.251 29 H 0.126 0.874 30 H 0.098 0.902 31 H 0.090 0.910 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.119 0.881 35 H 0.224 0.776 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.116 0.884 39 H 0.132 0.868 40 H 0.097 0.903 41 H 0.217 0.783 42 H 0.084 0.916 43 H 0.064 0.936 44 H 0.019 0.981 45 H 0.037 0.963 46 H 0.045 0.955 47 H 0.057 0.943 48 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -18.689 23.501 -15.152 33.633 hybrid contribution 1.497 -0.170 0.684 1.654 sum -17.192 23.330 -14.469 32.392 Atomic orbital electron populations 1.22192 0.75038 1.05789 1.03245 1.46638 1.07249 1.02418 1.74017 1.21843 0.97628 0.83680 1.02173 1.19990 0.89494 0.89053 0.89273 1.23898 1.02908 0.85918 1.04716 1.68621 1.06740 1.28245 1.05172 1.21396 0.91449 0.94808 1.13086 1.17778 0.86178 0.83423 0.76078 1.90716 1.14278 1.87280 1.52852 1.47639 1.08658 1.05087 1.70834 1.22398 0.76864 1.03841 1.03093 1.22253 0.98589 0.85547 0.96940 1.22947 0.94562 0.88289 0.92024 0.90464 1.86507 1.33083 1.57071 1.60251 1.21519 0.98623 0.94691 0.85528 1.43889 1.22427 1.58996 1.08042 1.20515 0.88173 0.92598 0.95705 1.19395 1.05236 0.98298 1.14735 0.92031 1.25979 1.00771 0.95368 1.02719 1.70157 1.45412 1.07579 1.35466 0.85301 0.79468 0.76981 0.78891 1.21659 1.21772 1.19561 1.23398 1.01603 0.86188 0.88335 1.68139 1.07550 1.29084 1.20289 0.87414 0.90172 0.90955 0.92815 0.91938 0.88135 0.77614 0.91330 0.91123 0.88443 0.86797 0.90350 0.78327 0.91585 0.93566 0.98139 0.96324 0.95486 0.94346 0.80870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.17 9.40 127.77 1.20 1.37 16 2 N -0.59 -6.37 3.37 -753.48 -2.54 -8.91 16 3 C 0.09 0.80 10.38 127.77 1.33 2.12 16 4 C 0.36 6.46 7.36 133.34 0.98 7.44 16 5 C 0.00 -0.01 10.49 85.15 0.89 0.89 16 6 N -0.37 -8.09 6.20 -183.79 -1.14 -9.23 16 7 C -0.07 -1.89 6.61 41.74 0.28 -1.61 16 8 C 0.58 18.45 7.12 86.78 0.62 19.07 16 9 O -0.57 -21.38 14.88 1.24 0.02 -21.36 16 10 N -0.59 -16.64 2.83 -850.22 -2.40 -19.04 16 11 C 0.08 1.70 9.32 127.77 1.19 2.89 16 12 C 0.09 2.56 5.13 86.38 0.44 3.00 16 13 C 0.08 3.05 3.48 30.60 0.11 3.16 16 14 H 0.08 2.92 8.14 -2.38 -0.02 2.90 16 15 O -0.56 -24.05 11.29 -143.84 -1.62 -25.67 16 16 C 0.12 5.04 5.37 86.38 0.46 5.51 16 17 N -0.61 -31.87 2.87 -726.94 -2.09 -33.96 16 18 C 0.18 8.94 9.00 127.77 1.15 10.09 16 19 C -0.25 -14.23 9.17 84.04 0.77 -13.46 16 20 H 0.06 3.58 7.35 -2.91 -0.02 3.56 16 21 C -0.05 -3.16 5.16 84.86 0.44 -2.72 16 22 N -0.94 -57.80 11.04 21.65 0.24 -57.56 16 23 Si 0.96 47.91 29.56 68.60 2.03 49.94 16 24 H -0.29 -14.29 7.11 99.48 0.71 -13.58 16 25 H -0.29 -14.31 7.11 99.48 0.71 -13.60 16 26 H -0.27 -12.97 7.11 99.48 0.71 -12.26 16 27 C 0.17 4.36 10.76 84.94 0.91 5.27 16 28 N -0.53 -12.27 9.31 -191.74 -1.78 -14.05 16 29 H 0.11 -0.21 7.79 -2.39 -0.02 -0.23 16 30 H 0.08 -0.01 7.76 -2.39 -0.02 -0.03 16 31 H 0.07 0.11 8.09 -2.39 -0.02 0.09 16 32 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.06 0.81 7.46 -2.38 -0.02 0.79 16 34 H 0.10 0.28 7.92 -2.39 -0.02 0.26 16 35 H 0.21 1.48 6.71 -2.91 -0.02 1.46 16 36 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.07 1.34 8.02 -2.39 -0.02 1.32 16 38 H 0.10 2.16 5.25 -2.64 -0.01 2.15 16 39 H 0.11 2.49 8.07 -2.39 -0.02 2.47 16 40 H 0.08 2.37 7.39 -2.39 -0.02 2.36 16 41 H 0.37 15.26 8.53 -74.06 -0.63 14.62 16 42 H 0.07 2.37 8.07 -2.39 -0.02 2.35 16 43 H 0.05 1.93 8.04 -2.39 -0.02 1.91 16 44 H 0.00 0.02 7.74 -2.39 -0.02 0.00 16 45 H 0.02 1.02 7.17 -2.38 -0.02 1.01 16 46 H 0.03 1.16 8.11 -2.39 -0.02 1.14 16 47 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 48 H 0.17 4.56 7.65 -2.91 -0.02 4.54 16 Total: -1.00 -79.72 391.27 1.82 -77.91 By element: Atomic # 1 Polarization: 18.59 SS G_CDS: 0.34 Total: 18.93 kcal Atomic # 6 Polarization: 32.24 SS G_CDS: 10.77 Total: 43.01 kcal Atomic # 7 Polarization: -133.03 SS G_CDS: -9.72 Total: -142.75 kcal Atomic # 8 Polarization: -45.43 SS G_CDS: -1.61 Total: -47.03 kcal Atomic # 14 Polarization: 47.91 SS G_CDS: 2.03 Total: 49.94 kcal Total: -79.72 1.82 -77.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284492647.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.292 kcal (2) G-P(sol) polarization free energy of solvation -79.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds