Wall clock time and date at job start Tue Mar 31 2020 21:18:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46498 * 120.00177 * 2 1 4 4 C 1.38405 * 120.00254 * 180.02562 * 2 1 3 5 5 C 1.39892 * 119.99454 * 4.99160 * 4 2 1 6 6 N 1.31455 * 120.01305 * 180.02562 * 5 4 2 7 7 C 1.33287 * 120.00650 * 0.02562 * 6 5 4 8 8 C 1.47823 * 119.99763 * 180.02562 * 7 6 5 9 9 O 1.21567 * 119.99359 * 187.53796 * 8 7 6 10 10 N 1.34778 * 120.00326 * 7.53923 * 8 7 6 11 11 C 1.46496 * 119.99760 * 356.95597 * 10 8 7 12 12 C 1.46492 * 119.99861 * 176.95791 * 10 8 7 13 13 C 1.53001 * 109.47277 * 89.99878 * 12 10 8 14 14 H 1.08997 * 109.46981 * 304.99812 * 13 12 10 15 15 O 1.42899 * 109.47131 * 64.99797 * 13 12 10 16 16 C 1.52996 * 109.47341 * 184.99731 * 13 12 10 17 17 N 1.46502 * 109.47248 * 180.02562 * 16 13 12 18 18 C 1.46508 * 119.99758 * 269.99724 * 17 16 13 19 19 C 1.36936 * 120.00451 * 89.99875 * 17 16 13 20 20 H 1.07997 * 119.99939 * 326.42068 * 19 17 16 21 21 C 1.38811 * 119.99797 * 146.14222 * 19 17 16 22 22 N 1.31614 * 120.00385 * 4.22682 * 21 19 17 23 23 Si 1.86799 * 119.99506 * 184.22940 * 21 19 17 24 24 H 1.48504 * 109.47560 * 90.00411 * 23 21 19 25 25 H 1.48503 * 109.47231 * 210.00149 * 23 21 19 26 26 H 1.48499 * 109.47585 * 329.99789 * 23 21 19 27 27 C 1.39400 * 119.99433 * 0.27699 * 7 6 5 28 28 N 1.32051 * 119.99092 * 359.43342 * 27 7 6 29 29 H 1.09002 * 109.47189 * 269.99696 * 1 2 3 30 30 H 1.09001 * 109.47166 * 29.99965 * 1 2 3 31 31 H 1.09003 * 109.46827 * 149.99839 * 1 2 3 32 32 H 1.08998 * 109.47470 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.47338 * 300.00516 * 3 2 1 34 34 H 1.08998 * 109.47208 * 60.00117 * 3 2 1 35 35 H 1.08000 * 119.99857 * 0.04958 * 5 4 2 36 36 H 1.09005 * 109.47444 * 276.15781 * 11 10 8 37 37 H 1.08998 * 109.47064 * 36.15639 * 11 10 8 38 38 H 1.08998 * 109.47273 * 156.15938 * 11 10 8 39 39 H 1.08998 * 109.47782 * 329.99938 * 12 10 8 40 40 H 1.09003 * 109.47395 * 209.99482 * 12 10 8 41 41 H 0.96702 * 114.00226 * 60.00401 * 15 13 12 42 42 H 1.09001 * 109.47281 * 59.99848 * 16 13 12 43 43 H 1.09004 * 109.47553 * 300.00096 * 16 13 12 44 44 H 1.08994 * 109.47359 * 274.67437 * 18 17 16 45 45 H 1.09005 * 109.46917 * 34.67568 * 18 17 16 46 46 H 1.09002 * 109.46698 * 154.67052 * 18 17 16 47 47 H 0.97004 * 120.00011 * 179.97438 * 22 21 19 48 48 H 1.08013 * 120.00240 * 179.72555 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1570 -1.1986 -0.0005 5 6 1.4615 -2.4077 -0.1065 6 7 2.1184 -3.5463 -0.1065 7 6 3.4474 -3.5491 -0.0051 8 6 4.1860 -4.8296 -0.0057 9 8 5.3798 -4.8428 0.2236 10 7 3.5359 -5.9825 -0.2605 11 6 2.0862 -5.9748 -0.4709 12 6 4.2791 -7.2431 -0.3270 13 6 4.3316 -7.8783 1.0639 14 1 4.7494 -7.1644 1.7737 15 8 3.0108 -8.2392 1.4729 16 6 5.2117 -9.1290 1.0207 17 7 5.2614 -9.7375 2.3524 18 6 6.3023 -9.3367 3.3024 19 6 4.3352 -10.6808 2.7093 20 1 3.3256 -10.6164 2.3312 21 6 4.6954 -11.7229 3.5525 22 7 5.9027 -11.7592 4.0754 23 14 3.4666 -13.0740 3.9449 24 1 3.5962 -14.1663 2.9472 25 1 3.7370 -13.6099 5.3033 26 1 2.0896 -12.5202 3.8966 27 6 4.1403 -2.3447 0.1069 28 7 3.4808 -1.2008 0.1011 29 1 -0.3634 -0.0001 1.0277 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3633 -0.8900 -0.5139 32 1 3.2691 1.0695 -0.0005 33 1 1.9341 1.8403 -0.8899 34 1 1.9342 1.8403 0.8900 35 1 0.3846 -2.4058 -0.1887 36 1 1.5789 -6.0027 0.4935 37 1 1.8014 -5.0684 -1.0051 38 1 1.7995 -6.8476 -1.0575 39 1 5.2933 -7.0492 -0.6763 40 1 3.7806 -7.9228 -1.0181 41 1 2.5767 -8.8733 0.8860 42 1 6.2192 -8.8538 0.7087 43 1 4.7939 -9.8430 0.3108 44 1 7.2040 -9.9217 3.1216 45 1 6.5242 -8.2774 3.1727 46 1 5.9528 -9.5129 4.3198 47 1 6.1542 -12.4873 4.6649 48 1 5.2170 -2.3471 0.1935 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284492649.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:22 Heat of formation + Delta-G solvation = 31.957858 kcal Electronic energy + Delta-G solvation = -29446.392821 eV Core-core repulsion = 25346.306156 eV Total energy + Delta-G solvation = -4100.086665 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.55102 -39.57258 -37.52858 -37.09031 -35.39537 -34.54719 -34.05330 -31.49002 -31.15719 -29.51070 -28.98174 -26.95561 -26.63475 -25.72383 -25.14571 -24.44309 -22.87500 -21.94605 -20.36462 -20.00054 -18.21683 -17.92158 -17.12526 -16.75013 -16.22299 -16.03197 -15.71391 -15.45332 -15.02707 -14.93162 -14.82404 -14.58136 -14.30849 -14.08979 -13.43055 -13.29589 -13.18917 -13.09890 -13.03108 -12.74944 -12.69819 -12.54191 -12.44555 -11.78879 -11.64054 -11.52811 -11.02940 -10.87461 -10.78403 -10.58983 -10.46540 -10.45121 -10.22467 -10.17072 -9.88676 -9.84370 -9.63034 -9.14931 -8.45771 -8.29423 -8.09603 -6.41622 -5.65098 -3.15622 0.41375 0.84996 2.25055 2.74108 3.06800 3.43989 3.49908 3.51820 3.64410 3.86966 3.94822 4.05937 4.52934 4.57058 4.59105 4.72839 4.78093 4.93568 5.02641 5.07227 5.09067 5.21666 5.28608 5.37159 5.38901 5.50655 5.52903 5.72821 5.87080 5.98263 6.02619 6.08884 6.18088 6.19251 6.24211 6.56046 6.63138 6.72645 6.89764 7.00550 7.04901 7.40417 7.53430 7.56064 7.85451 7.96233 8.22662 8.40565 8.61278 9.37765 9.97052 10.53269 11.42066 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.022696 B = 0.002216 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.398640 B =12630.412770 C =13047.452068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.600 5.600 3 C 0.087 3.913 4 C 0.370 3.630 5 C -0.015 4.015 6 N -0.363 5.363 7 C -0.042 4.042 8 C 0.576 3.424 9 O -0.539 6.539 10 N -0.586 5.586 11 C 0.082 3.918 12 C 0.082 3.918 13 C 0.072 3.928 14 H 0.090 0.910 15 O -0.543 6.543 16 C 0.125 3.875 17 N -0.592 5.592 18 C 0.163 3.837 19 C -0.244 4.244 20 H 0.067 0.933 21 C 0.004 3.996 22 N -0.908 5.908 23 Si 0.902 3.098 24 H -0.288 1.288 25 H -0.292 1.292 26 H -0.279 1.279 27 C 0.172 3.828 28 N -0.509 5.509 29 H 0.061 0.939 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.093 0.907 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.171 0.829 36 H 0.061 0.939 37 H 0.098 0.902 38 H 0.056 0.944 39 H 0.089 0.911 40 H 0.078 0.922 41 H 0.360 0.640 42 H 0.044 0.956 43 H 0.049 0.951 44 H 0.016 0.984 45 H -0.011 1.011 46 H 0.056 0.944 47 H 0.251 0.749 48 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.924 25.211 -13.392 30.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.312 5.312 3 C -0.056 4.056 4 C 0.131 3.869 5 C -0.187 4.187 6 N -0.080 5.080 7 C -0.182 4.182 8 C 0.362 3.638 9 O -0.417 6.417 10 N -0.316 5.316 11 C -0.061 4.061 12 C -0.041 4.041 13 C 0.009 3.991 14 H 0.108 0.892 15 O -0.346 6.346 16 C -0.003 4.003 17 N -0.314 5.314 18 C 0.018 3.982 19 C -0.374 4.374 20 H 0.084 0.916 21 C -0.194 4.194 22 N -0.553 5.553 23 Si 0.732 3.268 24 H -0.215 1.215 25 H -0.219 1.219 26 H -0.205 1.205 27 C 0.010 3.990 28 N -0.232 5.232 29 H 0.079 0.921 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.112 0.888 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.188 0.812 36 H 0.079 0.921 37 H 0.115 0.885 38 H 0.075 0.925 39 H 0.107 0.893 40 H 0.097 0.903 41 H 0.205 0.795 42 H 0.062 0.938 43 H 0.068 0.932 44 H 0.034 0.966 45 H 0.008 0.992 46 H 0.075 0.925 47 H 0.062 0.938 48 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -11.129 25.622 -12.638 30.660 hybrid contribution -0.876 -1.082 -0.073 1.394 sum -12.005 24.540 -12.711 30.131 Atomic orbital electron populations 1.21859 0.77625 1.03638 1.02400 1.46204 1.05704 1.03074 1.76239 1.21772 0.99072 0.83740 1.01040 1.19633 0.89886 0.87592 0.89834 1.23366 1.01536 0.86912 1.06839 1.68707 1.07735 1.27115 1.04416 1.21730 0.90664 0.95715 1.10141 1.17516 0.86112 0.82553 0.77624 1.90807 1.14302 1.86485 1.50073 1.47594 1.09205 1.06358 1.68440 1.22320 0.78829 1.02755 1.02168 1.22458 0.97870 0.84164 0.99606 1.23177 0.84843 0.97874 0.93225 0.89237 1.86627 1.28393 1.65002 1.54627 1.21327 0.96872 0.92809 0.89341 1.43642 1.33542 1.45425 1.08821 1.20804 0.91334 0.91578 0.94497 1.19136 0.90803 1.00264 1.27156 0.91561 1.25361 0.95956 0.97562 1.00563 1.70035 1.18628 1.32331 1.34297 0.86293 0.80791 0.82550 0.77160 1.21507 1.21872 1.20475 1.23495 1.01681 0.85836 0.87943 1.68085 1.06296 1.29558 1.19222 0.92094 0.90351 0.90545 0.88835 0.92362 0.92334 0.81218 0.92078 0.88465 0.92518 0.89304 0.90347 0.79472 0.93794 0.93236 0.96551 0.99243 0.92499 0.93831 0.80081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.28 10.33 59.84 0.62 0.90 16 2 N -0.60 -3.97 3.37 -189.51 -0.64 -4.61 16 3 C 0.09 0.46 10.71 59.85 0.64 1.11 16 4 C 0.37 3.49 7.37 -155.01 -1.14 2.35 16 5 C -0.01 -0.14 10.42 -17.09 -0.18 -0.31 16 6 N -0.36 -4.20 6.18 -9.44 -0.06 -4.26 16 7 C -0.04 -0.56 6.61 -82.88 -0.55 -1.11 16 8 C 0.58 9.07 7.65 -12.34 -0.09 8.97 16 9 O -0.54 -9.91 15.96 5.31 0.08 -9.82 16 10 N -0.59 -8.53 2.84 -182.71 -0.52 -9.05 16 11 C 0.08 0.98 8.99 59.84 0.54 1.52 16 12 C 0.08 1.22 5.08 -4.05 -0.02 1.20 16 13 C 0.07 1.35 3.48 -26.73 -0.09 1.26 16 14 H 0.09 1.97 8.14 -51.93 -0.42 1.55 16 15 O -0.54 -10.49 11.75 -35.23 -0.41 -10.90 16 16 C 0.13 2.63 5.41 -4.04 -0.02 2.61 16 17 N -0.59 -15.59 2.86 -181.11 -0.52 -16.10 16 18 C 0.16 4.33 8.98 59.85 0.54 4.87 16 19 C -0.24 -6.85 9.07 -15.06 -0.14 -6.98 16 20 H 0.07 1.81 7.24 -52.49 -0.38 1.43 16 21 C 0.00 0.10 5.33 -17.43 -0.09 0.01 16 22 N -0.91 -27.44 10.68 55.49 0.59 -26.84 16 23 Si 0.90 22.37 29.55 -169.99 -5.02 17.35 16 24 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 25 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 26 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 27 C 0.17 2.08 10.76 -17.02 -0.18 1.89 16 28 N -0.51 -5.68 8.99 -11.95 -0.11 -5.78 16 29 H 0.06 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.08 0.12 8.07 -51.93 -0.42 -0.30 16 31 H 0.08 0.17 5.98 -51.93 -0.31 -0.14 16 32 H 0.09 0.65 6.82 -51.93 -0.35 0.30 16 33 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 34 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.17 0.96 6.02 -52.49 -0.32 0.64 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.10 1.07 5.19 -52.47 -0.27 0.80 16 38 H 0.06 0.57 7.82 -51.93 -0.41 0.17 16 39 H 0.09 1.36 7.46 -51.93 -0.39 0.97 16 40 H 0.08 0.97 7.85 -51.93 -0.41 0.56 16 41 H 0.36 5.78 9.02 45.56 0.41 6.19 16 42 H 0.04 0.89 8.07 -51.93 -0.42 0.47 16 43 H 0.05 0.99 8.04 -51.93 -0.42 0.57 16 44 H 0.02 0.45 7.79 -51.93 -0.40 0.05 16 45 H -0.01 -0.27 8.11 -51.93 -0.42 -0.69 16 46 H 0.06 1.64 6.96 -51.93 -0.36 1.28 16 47 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 48 H 0.18 2.02 7.65 -52.48 -0.40 1.62 16 LS Contribution 390.82 15.07 5.89 5.89 Total: -1.00 -36.17 390.82 -7.41 -43.58 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -6.52 Total: 2.27 kcal Atomic # 6 Polarization: 18.46 SS G_CDS: -0.18 Total: 18.28 kcal Atomic # 7 Polarization: -65.40 SS G_CDS: -1.25 Total: -66.64 kcal Atomic # 8 Polarization: -20.40 SS G_CDS: -0.33 Total: -20.73 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -36.17 -7.41 -43.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284492649.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.538 kcal (2) G-P(sol) polarization free energy of solvation -36.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.580 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds