Wall clock time and date at job start Tue Mar 31 2020 21:18:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46498 * 120.00177 * 2 1 4 4 C 1.38405 * 120.00254 * 180.02562 * 2 1 3 5 5 C 1.39892 * 119.99454 * 4.99160 * 4 2 1 6 6 N 1.31455 * 120.01305 * 180.02562 * 5 4 2 7 7 C 1.33287 * 120.00650 * 0.02562 * 6 5 4 8 8 C 1.47823 * 119.99763 * 180.02562 * 7 6 5 9 9 O 1.21567 * 119.99359 * 187.53796 * 8 7 6 10 10 N 1.34778 * 120.00326 * 7.53923 * 8 7 6 11 11 C 1.46496 * 119.99760 * 356.95597 * 10 8 7 12 12 C 1.46492 * 119.99861 * 176.95791 * 10 8 7 13 13 C 1.53001 * 109.47277 * 89.99878 * 12 10 8 14 14 H 1.08997 * 109.46981 * 304.99812 * 13 12 10 15 15 O 1.42899 * 109.47131 * 64.99797 * 13 12 10 16 16 C 1.52996 * 109.47341 * 184.99731 * 13 12 10 17 17 N 1.46502 * 109.47248 * 180.02562 * 16 13 12 18 18 C 1.46508 * 119.99758 * 269.99724 * 17 16 13 19 19 C 1.36936 * 120.00451 * 89.99875 * 17 16 13 20 20 H 1.07997 * 119.99939 * 326.42068 * 19 17 16 21 21 C 1.38811 * 119.99797 * 146.14222 * 19 17 16 22 22 N 1.31614 * 120.00385 * 4.22682 * 21 19 17 23 23 Si 1.86799 * 119.99506 * 184.22940 * 21 19 17 24 24 H 1.48504 * 109.47560 * 90.00411 * 23 21 19 25 25 H 1.48503 * 109.47231 * 210.00149 * 23 21 19 26 26 H 1.48499 * 109.47585 * 329.99789 * 23 21 19 27 27 C 1.39400 * 119.99433 * 0.27699 * 7 6 5 28 28 N 1.32051 * 119.99092 * 359.43342 * 27 7 6 29 29 H 1.09002 * 109.47189 * 269.99696 * 1 2 3 30 30 H 1.09001 * 109.47166 * 29.99965 * 1 2 3 31 31 H 1.09003 * 109.46827 * 149.99839 * 1 2 3 32 32 H 1.08998 * 109.47470 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.47338 * 300.00516 * 3 2 1 34 34 H 1.08998 * 109.47208 * 60.00117 * 3 2 1 35 35 H 1.08000 * 119.99857 * 0.04958 * 5 4 2 36 36 H 1.09005 * 109.47444 * 276.15781 * 11 10 8 37 37 H 1.08998 * 109.47064 * 36.15639 * 11 10 8 38 38 H 1.08998 * 109.47273 * 156.15938 * 11 10 8 39 39 H 1.08998 * 109.47782 * 329.99938 * 12 10 8 40 40 H 1.09003 * 109.47395 * 209.99482 * 12 10 8 41 41 H 0.96702 * 114.00226 * 60.00401 * 15 13 12 42 42 H 1.09001 * 109.47281 * 59.99848 * 16 13 12 43 43 H 1.09004 * 109.47553 * 300.00096 * 16 13 12 44 44 H 1.08994 * 109.47359 * 274.67437 * 18 17 16 45 45 H 1.09005 * 109.46917 * 34.67568 * 18 17 16 46 46 H 1.09002 * 109.46698 * 154.67052 * 18 17 16 47 47 H 0.97004 * 120.00011 * 179.97438 * 22 21 19 48 48 H 1.08013 * 120.00240 * 179.72555 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1570 -1.1986 -0.0005 5 6 1.4615 -2.4077 -0.1065 6 7 2.1184 -3.5463 -0.1065 7 6 3.4474 -3.5491 -0.0051 8 6 4.1860 -4.8296 -0.0057 9 8 5.3798 -4.8428 0.2236 10 7 3.5359 -5.9825 -0.2605 11 6 2.0862 -5.9748 -0.4709 12 6 4.2791 -7.2431 -0.3270 13 6 4.3316 -7.8783 1.0639 14 1 4.7494 -7.1644 1.7737 15 8 3.0108 -8.2392 1.4729 16 6 5.2117 -9.1290 1.0207 17 7 5.2614 -9.7375 2.3524 18 6 6.3023 -9.3367 3.3024 19 6 4.3352 -10.6808 2.7093 20 1 3.3256 -10.6164 2.3312 21 6 4.6954 -11.7229 3.5525 22 7 5.9027 -11.7592 4.0754 23 14 3.4666 -13.0740 3.9449 24 1 3.5962 -14.1663 2.9472 25 1 3.7370 -13.6099 5.3033 26 1 2.0896 -12.5202 3.8966 27 6 4.1403 -2.3447 0.1069 28 7 3.4808 -1.2008 0.1011 29 1 -0.3634 -0.0001 1.0277 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3633 -0.8900 -0.5139 32 1 3.2691 1.0695 -0.0005 33 1 1.9341 1.8403 -0.8899 34 1 1.9342 1.8403 0.8900 35 1 0.3846 -2.4058 -0.1887 36 1 1.5789 -6.0027 0.4935 37 1 1.8014 -5.0684 -1.0051 38 1 1.7995 -6.8476 -1.0575 39 1 5.2933 -7.0492 -0.6763 40 1 3.7806 -7.9228 -1.0181 41 1 2.5767 -8.8733 0.8860 42 1 6.2192 -8.8538 0.7087 43 1 4.7939 -9.8430 0.3108 44 1 7.2040 -9.9217 3.1216 45 1 6.5242 -8.2774 3.1727 46 1 5.9528 -9.5129 4.3198 47 1 6.1542 -12.4873 4.6649 48 1 5.2170 -2.3471 0.1935 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284492649.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:20 Heat of formation + Delta-G solvation = 5.494163 kcal Electronic energy + Delta-G solvation = -29447.540373 eV Core-core repulsion = 25346.306156 eV Total energy + Delta-G solvation = -4101.234217 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.37137 -40.68492 -38.85778 -37.94206 -36.84906 -36.06267 -35.03139 -33.32534 -32.18935 -30.96791 -29.37745 -28.11932 -27.80430 -27.71456 -26.28361 -25.23615 -24.08120 -23.13822 -22.16073 -21.08340 -19.08445 -18.75783 -18.57832 -18.08272 -17.45573 -17.13038 -16.86125 -16.54725 -16.42050 -16.15520 -15.95234 -15.44408 -15.33138 -15.24048 -15.15532 -14.74446 -14.50744 -14.17110 -13.91067 -13.79977 -13.58320 -13.37026 -13.16564 -13.09044 -12.93595 -12.76143 -12.60521 -12.54926 -12.45484 -12.21775 -12.12718 -11.83417 -11.81339 -11.74365 -11.36452 -11.19122 -11.14618 -10.52494 -10.01682 -9.57431 -8.78636 -8.49264 -7.81275 -5.35009 -0.44371 0.06558 1.48397 1.49884 1.59010 1.69415 1.69628 2.02031 2.53904 2.75121 3.03768 3.22230 3.35789 3.37023 3.58476 3.68475 3.83644 4.00994 4.08408 4.21108 4.23767 4.38444 4.45044 4.50842 4.55018 4.55508 4.64065 4.75256 4.76210 4.84335 4.85821 4.93395 4.97632 4.98455 5.08679 5.21690 5.32832 5.36792 5.62124 5.63159 5.65740 5.74957 5.94807 6.28217 6.36560 6.45475 6.73694 7.04232 7.09953 7.22283 7.88468 8.41155 9.25200 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.022696 B = 0.002216 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.398640 B =12630.412770 C =13047.452068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.592 5.592 3 C 0.081 3.919 4 C 0.369 3.631 5 C -0.003 4.003 6 N -0.371 5.371 7 C -0.073 4.073 8 C 0.568 3.432 9 O -0.580 6.580 10 N -0.588 5.588 11 C 0.085 3.915 12 C 0.092 3.908 13 C 0.091 3.909 14 H 0.050 0.950 15 O -0.559 6.559 16 C 0.124 3.876 17 N -0.612 5.612 18 C 0.178 3.822 19 C -0.246 4.246 20 H 0.077 0.923 21 C -0.059 4.059 22 N -0.944 5.944 23 Si 0.973 3.027 24 H -0.281 1.281 25 H -0.300 1.300 26 H -0.267 1.267 27 C 0.170 3.830 28 N -0.527 5.527 29 H 0.069 0.931 30 H 0.100 0.900 31 H 0.090 0.910 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.209 0.791 36 H 0.046 0.954 37 H 0.109 0.891 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.114 0.886 41 H 0.376 0.624 42 H 0.048 0.952 43 H 0.067 0.933 44 H -0.002 1.002 45 H 0.006 0.994 46 H 0.026 0.974 47 H 0.246 0.754 48 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.457 26.494 -15.167 34.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.302 5.302 3 C -0.061 4.061 4 C 0.126 3.874 5 C -0.178 4.178 6 N -0.087 5.087 7 C -0.211 4.211 8 C 0.356 3.644 9 O -0.460 6.460 10 N -0.317 5.317 11 C -0.056 4.056 12 C -0.031 4.031 13 C 0.028 3.972 14 H 0.068 0.932 15 O -0.364 6.364 16 C -0.003 4.003 17 N -0.335 5.335 18 C 0.032 3.968 19 C -0.376 4.376 20 H 0.094 0.906 21 C -0.253 4.253 22 N -0.591 5.591 23 Si 0.800 3.200 24 H -0.208 1.208 25 H -0.227 1.227 26 H -0.192 1.192 27 C 0.008 3.992 28 N -0.250 5.250 29 H 0.087 0.913 30 H 0.119 0.881 31 H 0.109 0.891 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.091 0.909 35 H 0.225 0.775 36 H 0.065 0.935 37 H 0.126 0.874 38 H 0.098 0.902 39 H 0.101 0.899 40 H 0.132 0.868 41 H 0.224 0.776 42 H 0.067 0.933 43 H 0.085 0.915 44 H 0.016 0.984 45 H 0.024 0.976 46 H 0.045 0.955 47 H 0.056 0.944 48 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -14.711 26.937 -14.461 33.928 hybrid contribution 0.060 -1.206 0.461 1.293 sum -14.651 25.730 -14.001 32.753 Atomic orbital electron populations 1.22193 0.75201 1.05531 1.03501 1.46631 1.07226 1.02464 1.73847 1.21899 0.98006 0.83457 1.02761 1.19982 0.89558 0.89014 0.88838 1.23970 1.02978 0.85958 1.04857 1.68617 1.06860 1.28341 1.04869 1.21320 0.91481 0.94618 1.13635 1.17973 0.85915 0.83720 0.76776 1.90765 1.16067 1.87250 1.51942 1.47696 1.10272 1.05779 1.67963 1.22408 0.76922 1.04472 1.01841 1.22274 0.98519 0.84928 0.97427 1.22721 0.84048 0.95892 0.94539 0.93201 1.86585 1.28375 1.65710 1.55776 1.21519 0.97941 0.93736 0.87130 1.43901 1.33085 1.45873 1.10640 1.20501 0.90836 0.92123 0.93305 1.19499 0.91538 1.00110 1.26498 0.90591 1.26190 0.97908 1.00050 1.01142 1.70220 1.20664 1.32885 1.35304 0.85189 0.78885 0.79511 0.76365 1.20783 1.22687 1.19202 1.23416 1.01696 0.86046 0.87996 1.68116 1.07430 1.28914 1.20544 0.91287 0.88098 0.89130 0.90782 0.90232 0.90922 0.77493 0.93498 0.87380 0.90228 0.89920 0.86775 0.77604 0.93316 0.91499 0.98421 0.97588 0.95466 0.94445 0.80578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.17 10.33 127.77 1.32 1.49 16 2 N -0.59 -6.10 3.37 -753.49 -2.54 -8.64 16 3 C 0.08 0.68 10.71 127.77 1.37 2.05 16 4 C 0.37 6.26 7.37 133.34 0.98 7.24 16 5 C 0.00 -0.05 10.42 85.15 0.89 0.83 16 6 N -0.37 -8.09 6.18 -183.79 -1.14 -9.23 16 7 C -0.07 -1.95 6.61 41.74 0.28 -1.67 16 8 C 0.57 18.37 7.65 86.78 0.66 19.03 16 9 O -0.58 -22.44 15.96 -3.93 -0.06 -22.50 16 10 N -0.59 -16.76 2.84 -850.23 -2.41 -19.17 16 11 C 0.09 1.87 8.99 127.77 1.15 3.02 16 12 C 0.09 2.64 5.08 86.38 0.44 3.08 16 13 C 0.09 3.38 3.48 30.59 0.11 3.49 16 14 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 15 O -0.56 -20.93 11.75 -148.98 -1.75 -22.68 16 16 C 0.12 5.15 5.41 86.38 0.47 5.61 16 17 N -0.61 -32.50 2.86 -726.91 -2.08 -34.57 16 18 C 0.18 9.79 8.98 127.77 1.15 10.94 16 19 C -0.25 -13.78 9.07 84.03 0.76 -13.02 16 20 H 0.08 4.04 7.24 -2.91 -0.02 4.01 16 21 C -0.06 -3.40 5.33 84.86 0.45 -2.95 16 22 N -0.94 -58.38 10.68 21.65 0.23 -58.15 16 23 Si 0.97 46.14 29.55 68.60 2.03 48.17 16 24 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 25 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 26 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 27 C 0.17 4.25 10.76 84.94 0.91 5.16 16 28 N -0.53 -11.60 8.99 -191.73 -1.72 -13.32 16 29 H 0.07 0.12 8.14 -2.39 -0.02 0.10 16 30 H 0.10 -0.16 8.07 -2.39 -0.02 -0.18 16 31 H 0.09 -0.02 5.98 -2.39 -0.01 -0.04 16 32 H 0.07 0.96 6.82 -2.39 -0.02 0.94 16 33 H 0.08 0.36 8.14 -2.39 -0.02 0.34 16 34 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 35 H 0.21 1.46 6.02 -2.91 -0.02 1.45 16 36 H 0.05 1.17 8.14 -2.38 -0.02 1.15 16 37 H 0.11 2.17 5.19 -3.46 -0.02 2.15 16 38 H 0.08 1.36 7.82 -2.39 -0.02 1.34 16 39 H 0.08 2.51 7.46 -2.39 -0.02 2.49 16 40 H 0.11 2.46 7.85 -2.39 -0.02 2.44 16 41 H 0.38 11.19 9.02 -74.06 -0.67 10.52 16 42 H 0.05 1.97 8.07 -2.39 -0.02 1.95 16 43 H 0.07 2.54 8.04 -2.39 -0.02 2.52 16 44 H 0.00 -0.15 7.79 -2.39 -0.02 -0.16 16 45 H 0.01 0.29 8.11 -2.38 -0.02 0.27 16 46 H 0.03 1.61 6.96 -2.39 -0.02 1.59 16 47 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 48 H 0.18 4.34 7.65 -2.90 -0.02 4.31 16 Total: -1.00 -81.00 390.82 1.80 -79.21 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: 0.31 Total: 16.57 kcal Atomic # 6 Polarization: 33.38 SS G_CDS: 10.93 Total: 44.31 kcal Atomic # 7 Polarization: -133.42 SS G_CDS: -9.66 Total: -143.08 kcal Atomic # 8 Polarization: -43.36 SS G_CDS: -1.81 Total: -45.18 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.03 Total: 48.17 kcal Total: -81.00 1.80 -79.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284492649.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.701 kcal (2) G-P(sol) polarization free energy of solvation -81.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds