Wall clock time and date at job start Tue Mar 31 2020 21:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.36931 * 119.99853 * 2 1 4 4 H 1.08007 * 119.99501 * 204.75664 * 3 2 1 5 5 C 1.38809 * 120.00787 * 24.75985 * 3 2 1 6 6 N 1.31629 * 119.99583 * 6.34527 * 5 3 2 7 7 Si 1.86800 * 120.00325 * 186.34887 * 5 3 2 8 8 H 1.48498 * 109.46992 * 59.99917 * 7 5 3 9 9 H 1.48501 * 109.46867 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.46927 * 299.99618 * 7 5 3 11 11 C 1.46499 * 119.99566 * 179.97438 * 2 1 3 12 12 C 1.53005 * 109.47195 * 269.99925 * 11 2 1 13 13 H 1.09000 * 109.46586 * 305.00623 * 12 11 2 14 14 O 1.42906 * 109.46932 * 64.99908 * 12 11 2 15 15 C 1.52993 * 109.46940 * 185.00159 * 12 11 2 16 16 N 1.46507 * 109.46849 * 179.97438 * 15 12 11 17 17 C 1.46504 * 119.99759 * 90.00000 * 16 15 12 18 18 C 1.34775 * 120.00072 * 270.00043 * 16 15 12 19 19 O 1.21277 * 119.99825 * 4.77060 * 18 16 15 20 20 C 1.50697 * 120.00004 * 184.76465 * 18 16 15 21 21 H 1.09001 * 109.69276 * 334.09431 * 20 18 16 22 22 C 1.53431 * 109.69561 * 213.54115 * 20 18 16 23 23 C 1.53119 * 109.55059 * 190.60916 * 22 20 18 24 24 C 1.53421 * 109.61925 * 69.99623 * 23 22 20 25 25 C 1.50601 * 108.33400 * 310.18662 * 24 23 22 26 26 N 1.32908 * 129.16595 * 196.55724 * 25 24 23 27 27 N 1.29018 * 108.63422 * 179.88360 * 26 25 24 28 28 N 1.29109 * 110.26130 * 0.02651 * 27 26 25 29 29 H 0.97004 * 126.00407 * 180.02562 * 28 27 26 30 30 C 1.34393 * 107.98488 * 0.05391 * 28 27 26 31 31 H 1.08998 * 109.47170 * 275.05547 * 1 2 3 32 32 H 1.09009 * 109.46850 * 35.04874 * 1 2 3 33 33 H 1.08995 * 109.47256 * 155.04813 * 1 2 3 34 34 H 0.96994 * 119.99698 * 179.97438 * 6 5 3 35 35 H 1.08999 * 109.47129 * 149.99990 * 11 2 1 36 36 H 1.09005 * 109.47115 * 29.99971 * 11 2 1 37 37 H 0.96703 * 113.99901 * 60.00249 * 14 12 11 38 38 H 1.08998 * 109.47249 * 60.00461 * 15 12 11 39 39 H 1.08995 * 109.47430 * 299.99528 * 15 12 11 40 40 H 1.09000 * 109.47198 * 264.38031 * 17 16 15 41 41 H 1.09002 * 109.47111 * 24.38194 * 17 16 15 42 42 H 1.08999 * 109.47079 * 144.38415 * 17 16 15 43 43 H 1.08997 * 109.45876 * 310.60199 * 22 20 18 44 44 H 1.09003 * 109.45286 * 70.54810 * 22 20 18 45 45 H 1.09006 * 109.42769 * 309.95684 * 23 22 20 46 46 H 1.09004 * 109.44778 * 190.04905 * 23 22 20 47 47 H 1.08999 * 109.69552 * 190.47367 * 24 23 22 48 48 H 1.08995 * 109.72081 * 69.91024 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1553 1.2288 -0.3917 5 6 1.5515 2.3328 0.5034 6 7 0.3774 2.2578 1.0938 7 14 2.4125 3.9828 0.3430 8 1 2.6274 4.2913 -1.0936 9 1 1.5709 5.0419 0.9557 10 1 3.7231 3.9269 1.0389 11 6 2.1975 -1.2688 0.0006 12 6 2.4525 -1.7098 1.4433 13 1 2.9642 -0.9122 1.9819 14 8 1.2059 -1.9926 2.0823 15 6 3.3237 -2.9675 1.4456 16 7 3.5683 -3.3895 2.8271 17 6 2.6481 -4.3227 3.4818 18 6 4.6399 -2.9191 3.4956 19 8 5.3531 -2.0813 2.9855 20 6 4.9518 -3.4343 4.8771 21 1 4.0373 -3.7898 5.3517 22 6 5.5693 -2.3111 5.7205 23 6 6.1253 -2.8946 7.0224 24 6 7.3638 -3.7472 6.7173 25 6 7.0203 -4.6995 5.6023 26 7 7.6551 -5.8005 5.2133 27 7 7.0153 -6.3155 4.2183 28 7 5.9809 -5.5978 3.9323 29 1 5.3411 -5.7760 3.2252 30 6 5.9467 -4.5604 4.7859 31 1 -0.3633 0.0906 1.0236 32 1 -0.3633 0.8414 -0.5902 33 1 -0.3633 -0.9317 -0.4335 34 1 -0.0404 3.0591 1.4459 35 1 3.1499 -1.1387 -0.5133 36 1 1.6083 -2.0286 -0.5129 37 1 0.6953 -2.6942 1.6555 38 1 4.2745 -2.7518 0.9583 39 1 2.8119 -3.7650 0.9070 40 1 1.9185 -3.7630 4.0671 41 1 2.1312 -4.9137 2.7258 42 1 3.2100 -4.9856 4.1398 43 1 6.3766 -1.8387 5.1610 44 1 4.8053 -1.5688 5.9518 45 1 5.3646 -3.5157 7.4954 46 1 6.4005 -2.0826 7.6956 47 1 7.6504 -4.3099 7.6057 48 1 8.1871 -3.1028 6.4092 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284509670.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:24:24 Heat of formation + Delta-G solvation = 34.403240 kcal Electronic energy + Delta-G solvation = -30549.949530 eV Core-core repulsion = 26449.968905 eV Total energy + Delta-G solvation = -4099.980625 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -43.79863 -40.29194 -37.74358 -36.84234 -35.49099 -34.60716 -34.10212 -31.49576 -30.99550 -30.44058 -29.62967 -27.06930 -26.17294 -25.69724 -24.45767 -23.43695 -22.95155 -22.03171 -20.58564 -20.07644 -19.55700 -18.31919 -17.54223 -16.84432 -16.43599 -16.26478 -15.97587 -15.42525 -15.01599 -14.87172 -14.56196 -14.28924 -14.23604 -13.97390 -13.68781 -13.56725 -13.23670 -13.07009 -12.87672 -12.83547 -12.38245 -11.91839 -11.81102 -11.69741 -11.56613 -11.49149 -11.30318 -11.12260 -10.94257 -10.86300 -10.72578 -10.62805 -10.47051 -10.30576 -10.12360 -10.01843 -9.91532 -9.73166 -9.13996 -8.67191 -8.44983 -6.66645 -5.69084 -3.17450 1.19016 2.19631 2.30688 2.41440 2.80204 3.41161 3.45487 3.46948 3.86672 4.14637 4.22794 4.36745 4.51295 4.57219 4.69916 4.82446 4.86950 4.93085 4.97966 5.06412 5.09931 5.14602 5.25447 5.28481 5.48475 5.53173 5.57585 5.63600 5.72733 5.73341 5.74492 5.84867 5.90586 5.95131 6.01693 6.05817 6.38121 6.46355 6.52852 6.78256 6.82553 7.16634 7.44069 7.80634 7.89315 7.97744 8.14218 8.22253 8.43660 9.27363 9.88705 10.37990 11.34836 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.016153 B = 0.002956 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.971308 B = 9471.220676 C =10351.912720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.171 3.829 2 N -0.592 5.592 3 C -0.260 4.260 4 H 0.066 0.934 5 C 0.006 3.994 6 N -0.904 5.904 7 Si 0.904 3.096 8 H -0.284 1.284 9 H -0.290 1.290 10 H -0.282 1.282 11 C 0.126 3.874 12 C 0.071 3.929 13 H 0.102 0.898 14 O -0.544 6.544 15 C 0.081 3.919 16 N -0.608 5.608 17 C 0.076 3.924 18 C 0.510 3.490 19 O -0.515 6.515 20 C -0.032 4.032 21 H 0.112 0.888 22 C -0.106 4.106 23 C -0.117 4.117 24 C -0.036 4.036 25 C -0.004 4.004 26 N -0.257 5.257 27 N -0.085 5.085 28 N -0.380 5.380 29 H 0.446 0.554 30 C 0.000 4.000 31 H 0.036 0.964 32 H 0.040 0.960 33 H -0.010 1.010 34 H 0.252 0.748 35 H 0.050 0.950 36 H 0.038 0.962 37 H 0.353 0.647 38 H 0.088 0.912 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.077 0.923 42 H 0.056 0.944 43 H 0.088 0.912 44 H 0.085 0.915 45 H 0.069 0.931 46 H 0.083 0.917 47 H 0.087 0.913 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.768 -17.269 9.815 20.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.314 5.314 3 C -0.389 4.389 4 H 0.084 0.916 5 C -0.192 4.192 6 N -0.549 5.549 7 Si 0.734 3.266 8 H -0.210 1.210 9 H -0.216 1.216 10 H -0.208 1.208 11 C -0.003 4.003 12 C 0.008 3.992 13 H 0.120 0.880 14 O -0.346 6.346 15 C -0.042 4.042 16 N -0.341 5.341 17 C -0.068 4.068 18 C 0.295 3.705 19 O -0.389 6.389 20 C -0.055 4.055 21 H 0.130 0.870 22 C -0.144 4.144 23 C -0.155 4.155 24 C -0.075 4.075 25 C -0.144 4.144 26 N -0.123 5.123 27 N -0.063 5.063 28 N -0.099 5.099 29 H 0.292 0.708 30 C -0.136 4.136 31 H 0.054 0.946 32 H 0.058 0.942 33 H 0.008 0.992 34 H 0.062 0.938 35 H 0.069 0.931 36 H 0.056 0.944 37 H 0.197 0.803 38 H 0.106 0.894 39 H 0.094 0.906 40 H 0.090 0.910 41 H 0.095 0.905 42 H 0.074 0.926 43 H 0.106 0.894 44 H 0.103 0.897 45 H 0.088 0.912 46 H 0.102 0.898 47 H 0.105 0.895 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 7.154 -17.449 9.699 21.206 hybrid contribution -0.965 1.145 -0.705 1.655 sum 6.189 -16.304 8.994 19.622 Atomic orbital electron populations 1.20786 0.82217 0.94690 0.99660 1.43805 1.01980 1.00111 1.85508 1.19154 0.99330 0.85968 1.34495 0.91585 1.25115 0.97372 0.98688 0.98065 1.70058 1.16234 1.27512 1.41048 0.86351 0.78920 0.83643 0.77723 1.21037 1.21578 1.20843 1.21439 0.96509 0.89426 0.92898 1.23320 0.83371 0.94234 0.98284 0.88000 1.86718 1.32687 1.59151 1.56041 1.22521 1.02106 0.98632 0.80980 1.47866 1.25190 1.46381 1.14681 1.21886 0.93737 0.92603 0.98532 1.20335 0.80867 0.82344 0.86934 1.90765 1.49304 1.30539 1.68307 1.20033 0.97281 0.92984 0.95239 0.86987 1.21585 1.02128 0.95555 0.95167 1.21658 0.97019 0.99677 0.97190 1.20042 0.98796 0.94500 0.94168 1.21727 0.94025 0.97259 1.01389 1.74842 1.22862 1.08299 1.06331 1.78577 0.96397 1.18318 1.13051 1.44734 1.21592 1.17700 1.25854 0.70808 1.21360 1.02129 0.93892 0.96235 0.94606 0.94158 0.99198 0.93766 0.93137 0.94355 0.80314 0.89398 0.90616 0.90991 0.90468 0.92555 0.89376 0.89670 0.91207 0.89790 0.89474 0.89467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.21 8.60 59.85 0.51 4.72 16 2 N -0.59 -14.81 2.89 -181.11 -0.52 -15.33 16 3 C -0.26 -7.25 9.66 -15.06 -0.15 -7.40 16 4 H 0.07 1.82 7.83 -52.48 -0.41 1.41 16 5 C 0.01 0.18 5.23 -17.43 -0.09 0.09 16 6 N -0.90 -26.71 10.47 55.49 0.58 -26.13 16 7 Si 0.90 22.32 29.56 -169.99 -5.02 17.29 16 8 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 9 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 10 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 11 C 0.13 2.45 5.37 -4.04 -0.02 2.42 16 12 C 0.07 1.25 3.48 -26.73 -0.09 1.15 16 13 H 0.10 2.32 8.14 -51.93 -0.42 1.90 16 14 O -0.54 -9.33 12.24 -35.23 -0.43 -9.76 16 15 C 0.08 1.03 5.11 -4.04 -0.02 1.01 16 16 N -0.61 -6.81 2.80 -181.57 -0.51 -7.32 16 17 C 0.08 0.55 9.28 59.85 0.56 1.11 16 18 C 0.51 6.70 6.64 -10.99 -0.07 6.63 16 19 O -0.51 -9.15 15.68 5.56 0.09 -9.06 16 20 C -0.03 -0.31 2.12 -92.78 -0.20 -0.51 16 21 H 0.11 0.84 6.33 -51.93 -0.33 0.51 16 22 C -0.11 -1.02 5.04 -26.45 -0.13 -1.15 16 23 C -0.12 -0.82 5.89 -26.45 -0.16 -0.98 16 24 C -0.04 -0.30 6.31 -27.71 -0.17 -0.47 16 25 C 0.00 -0.05 7.11 -83.12 -0.59 -0.64 16 26 N -0.26 -3.45 12.40 33.17 0.41 -3.04 16 27 N -0.08 -1.07 13.40 60.35 0.81 -0.26 16 28 N -0.38 -3.82 6.92 33.39 0.23 -3.59 16 29 H 0.45 3.28 8.96 -190.07 -1.70 1.57 16 30 C 0.00 0.00 6.38 -82.49 -0.53 -0.53 16 31 H 0.04 0.97 7.34 -51.93 -0.38 0.59 16 32 H 0.04 1.08 7.27 -51.92 -0.38 0.70 16 33 H -0.01 -0.22 7.84 -51.93 -0.41 -0.63 16 34 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 35 H 0.05 0.97 8.04 -51.93 -0.42 0.56 16 36 H 0.04 0.64 7.86 -51.93 -0.41 0.23 16 37 H 0.35 4.55 9.05 45.56 0.41 4.96 16 38 H 0.09 1.24 7.49 -51.93 -0.39 0.85 16 39 H 0.08 0.72 7.86 -51.93 -0.41 0.31 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.08 0.42 7.83 -51.93 -0.41 0.01 16 42 H 0.06 0.30 6.52 -51.93 -0.34 -0.04 16 43 H 0.09 1.03 7.47 -51.93 -0.39 0.64 16 44 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.07 0.43 8.12 -51.93 -0.42 0.01 16 46 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 47 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 386.85 15.07 5.83 5.83 Total: -1.00 -36.42 386.85 -7.74 -44.16 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -8.05 Total: 1.76 kcal Atomic # 6 Polarization: 6.60 SS G_CDS: -1.15 Total: 5.45 kcal Atomic # 7 Polarization: -56.67 SS G_CDS: 1.00 Total: -55.67 kcal Atomic # 8 Polarization: -18.48 SS G_CDS: -0.34 Total: -18.82 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -36.42 -7.74 -44.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284509670.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.562 kcal (2) G-P(sol) polarization free energy of solvation -36.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds