Wall clock time and date at job start Tue Mar 31 2020 21:24:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.36931 * 119.99853 * 2 1 4 4 H 1.08007 * 119.99501 * 204.75664 * 3 2 1 5 5 C 1.38809 * 120.00787 * 24.75985 * 3 2 1 6 6 N 1.31629 * 119.99583 * 6.34527 * 5 3 2 7 7 Si 1.86800 * 120.00325 * 186.34887 * 5 3 2 8 8 H 1.48498 * 109.46992 * 59.99917 * 7 5 3 9 9 H 1.48501 * 109.46867 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.46927 * 299.99618 * 7 5 3 11 11 C 1.46499 * 119.99566 * 179.97438 * 2 1 3 12 12 C 1.53005 * 109.47195 * 269.99925 * 11 2 1 13 13 H 1.09000 * 109.46586 * 305.00623 * 12 11 2 14 14 O 1.42906 * 109.46932 * 64.99908 * 12 11 2 15 15 C 1.52993 * 109.46940 * 185.00159 * 12 11 2 16 16 N 1.46507 * 109.46849 * 179.97438 * 15 12 11 17 17 C 1.46504 * 119.99759 * 90.00000 * 16 15 12 18 18 C 1.34775 * 120.00072 * 270.00043 * 16 15 12 19 19 O 1.21277 * 119.99825 * 4.77060 * 18 16 15 20 20 C 1.50697 * 120.00004 * 184.76465 * 18 16 15 21 21 H 1.09001 * 109.69276 * 334.09431 * 20 18 16 22 22 C 1.53431 * 109.69561 * 213.54115 * 20 18 16 23 23 C 1.53119 * 109.55059 * 190.60916 * 22 20 18 24 24 C 1.53421 * 109.61925 * 69.99623 * 23 22 20 25 25 C 1.50601 * 108.33400 * 310.18662 * 24 23 22 26 26 N 1.32908 * 129.16595 * 196.55724 * 25 24 23 27 27 N 1.29018 * 108.63422 * 179.88360 * 26 25 24 28 28 N 1.29109 * 110.26130 * 0.02651 * 27 26 25 29 29 H 0.97004 * 126.00407 * 180.02562 * 28 27 26 30 30 C 1.34393 * 107.98488 * 0.05391 * 28 27 26 31 31 H 1.08998 * 109.47170 * 275.05547 * 1 2 3 32 32 H 1.09009 * 109.46850 * 35.04874 * 1 2 3 33 33 H 1.08995 * 109.47256 * 155.04813 * 1 2 3 34 34 H 0.96994 * 119.99698 * 179.97438 * 6 5 3 35 35 H 1.08999 * 109.47129 * 149.99990 * 11 2 1 36 36 H 1.09005 * 109.47115 * 29.99971 * 11 2 1 37 37 H 0.96703 * 113.99901 * 60.00249 * 14 12 11 38 38 H 1.08998 * 109.47249 * 60.00461 * 15 12 11 39 39 H 1.08995 * 109.47430 * 299.99528 * 15 12 11 40 40 H 1.09000 * 109.47198 * 264.38031 * 17 16 15 41 41 H 1.09002 * 109.47111 * 24.38194 * 17 16 15 42 42 H 1.08999 * 109.47079 * 144.38415 * 17 16 15 43 43 H 1.08997 * 109.45876 * 310.60199 * 22 20 18 44 44 H 1.09003 * 109.45286 * 70.54810 * 22 20 18 45 45 H 1.09006 * 109.42769 * 309.95684 * 23 22 20 46 46 H 1.09004 * 109.44778 * 190.04905 * 23 22 20 47 47 H 1.08999 * 109.69552 * 190.47367 * 24 23 22 48 48 H 1.08995 * 109.72081 * 69.91024 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1553 1.2288 -0.3917 5 6 1.5515 2.3328 0.5034 6 7 0.3774 2.2578 1.0938 7 14 2.4125 3.9828 0.3430 8 1 2.6274 4.2913 -1.0936 9 1 1.5709 5.0419 0.9557 10 1 3.7231 3.9269 1.0389 11 6 2.1975 -1.2688 0.0006 12 6 2.4525 -1.7098 1.4433 13 1 2.9642 -0.9122 1.9819 14 8 1.2059 -1.9926 2.0823 15 6 3.3237 -2.9675 1.4456 16 7 3.5683 -3.3895 2.8271 17 6 2.6481 -4.3227 3.4818 18 6 4.6399 -2.9191 3.4956 19 8 5.3531 -2.0813 2.9855 20 6 4.9518 -3.4343 4.8771 21 1 4.0373 -3.7898 5.3517 22 6 5.5693 -2.3111 5.7205 23 6 6.1253 -2.8946 7.0224 24 6 7.3638 -3.7472 6.7173 25 6 7.0203 -4.6995 5.6023 26 7 7.6551 -5.8005 5.2133 27 7 7.0153 -6.3155 4.2183 28 7 5.9809 -5.5978 3.9323 29 1 5.3411 -5.7760 3.2252 30 6 5.9467 -4.5604 4.7859 31 1 -0.3633 0.0906 1.0236 32 1 -0.3633 0.8414 -0.5902 33 1 -0.3633 -0.9317 -0.4335 34 1 -0.0404 3.0591 1.4459 35 1 3.1499 -1.1387 -0.5133 36 1 1.6083 -2.0286 -0.5129 37 1 0.6953 -2.6942 1.6555 38 1 4.2745 -2.7518 0.9583 39 1 2.8119 -3.7650 0.9070 40 1 1.9185 -3.7630 4.0671 41 1 2.1312 -4.9137 2.7258 42 1 3.2100 -4.9856 4.1398 43 1 6.3766 -1.8387 5.1610 44 1 4.8053 -1.5688 5.9518 45 1 5.3646 -3.5157 7.4954 46 1 6.4005 -2.0826 7.6956 47 1 7.6504 -4.3099 7.6057 48 1 8.1871 -3.1028 6.4092 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284509670.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:24:22 Heat of formation + Delta-G solvation = 5.601910 kcal Electronic energy + Delta-G solvation = -30551.198449 eV Core-core repulsion = 26449.968905 eV Total energy + Delta-G solvation = -4101.229544 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -44.64993 -41.30577 -39.03930 -37.75851 -36.89069 -36.07285 -34.99354 -33.32086 -32.02511 -31.25837 -30.87914 -28.14578 -27.80188 -27.18443 -25.43779 -24.39989 -23.81929 -23.42360 -22.26840 -20.93222 -20.41447 -19.18757 -18.83807 -18.37401 -17.66160 -17.32055 -16.95163 -16.69573 -16.45855 -16.19710 -15.89927 -15.46684 -15.16703 -14.94997 -14.79182 -14.62295 -14.60280 -14.46415 -13.96862 -13.60285 -13.53215 -13.18822 -13.03350 -12.80657 -12.72929 -12.61796 -12.53605 -12.48245 -12.27211 -12.15253 -12.07199 -12.00968 -11.99895 -11.79993 -11.72360 -11.40494 -11.31526 -10.96383 -10.62440 -9.99113 -9.69520 -8.66343 -7.83340 -5.32468 0.34225 1.27772 1.38409 1.41780 1.44004 1.50091 1.61928 1.90658 2.48200 3.08433 3.28217 3.31578 3.46047 3.61135 3.62008 3.74711 3.86717 4.02075 4.10893 4.17662 4.22166 4.24308 4.27338 4.38889 4.49714 4.52439 4.52959 4.62985 4.72323 4.89015 4.90612 4.91931 4.94982 5.00469 5.05716 5.13522 5.26321 5.28168 5.37596 5.38434 5.46241 5.61911 5.74152 5.85356 6.23509 6.33605 6.99309 7.09003 7.16731 7.26598 7.89565 8.30386 9.18345 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.016153 B = 0.002956 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.971308 B = 9471.220676 C =10351.912720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.188 3.812 2 N -0.612 5.612 3 C -0.268 4.268 4 H 0.062 0.938 5 C -0.049 4.049 6 N -0.932 5.932 7 Si 0.963 3.037 8 H -0.275 1.275 9 H -0.290 1.290 10 H -0.282 1.282 11 C 0.121 3.879 12 C 0.091 3.909 13 H 0.039 0.961 14 O -0.559 6.559 15 C 0.092 3.908 16 N -0.602 5.602 17 C 0.067 3.933 18 C 0.502 3.498 19 O -0.572 6.572 20 C -0.022 4.022 21 H 0.144 0.856 22 C -0.109 4.109 23 C -0.107 4.107 24 C -0.038 4.038 25 C -0.013 4.013 26 N -0.287 5.287 27 N -0.104 5.104 28 N -0.366 5.366 29 H 0.458 0.542 30 C 0.001 3.999 31 H 0.005 0.995 32 H 0.008 0.992 33 H 0.032 0.968 34 H 0.246 0.754 35 H 0.046 0.954 36 H 0.078 0.922 37 H 0.376 0.624 38 H 0.071 0.929 39 H 0.125 0.875 40 H 0.065 0.935 41 H 0.106 0.894 42 H 0.080 0.920 43 H 0.060 0.940 44 H 0.084 0.916 45 H 0.087 0.913 46 H 0.102 0.898 47 H 0.103 0.897 48 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.206 -19.478 10.340 22.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.334 5.334 3 C -0.399 4.399 4 H 0.080 0.920 5 C -0.245 4.245 6 N -0.579 5.579 7 Si 0.791 3.209 8 H -0.201 1.201 9 H -0.216 1.216 10 H -0.209 1.209 11 C -0.006 4.006 12 C 0.028 3.972 13 H 0.057 0.943 14 O -0.364 6.364 15 C -0.031 4.031 16 N -0.334 5.334 17 C -0.074 4.074 18 C 0.289 3.711 19 O -0.450 6.450 20 C -0.045 4.045 21 H 0.161 0.839 22 C -0.148 4.148 23 C -0.144 4.144 24 C -0.077 4.077 25 C -0.153 4.153 26 N -0.152 5.152 27 N -0.083 5.083 28 N -0.087 5.087 29 H 0.306 0.694 30 C -0.136 4.136 31 H 0.024 0.976 32 H 0.026 0.974 33 H 0.051 0.949 34 H 0.056 0.944 35 H 0.065 0.935 36 H 0.096 0.904 37 H 0.223 0.777 38 H 0.089 0.911 39 H 0.143 0.857 40 H 0.084 0.916 41 H 0.125 0.875 42 H 0.099 0.901 43 H 0.079 0.921 44 H 0.102 0.898 45 H 0.106 0.894 46 H 0.120 0.880 47 H 0.122 0.878 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 6.577 -19.745 10.209 23.181 hybrid contribution -0.820 1.757 -0.922 2.147 sum 5.757 -17.988 9.288 21.047 Atomic orbital electron populations 1.20476 0.82256 0.95411 0.97532 1.44013 1.02328 1.01235 1.85872 1.19448 0.99210 0.87636 1.33581 0.91980 1.25819 0.98231 1.01864 0.98574 1.70228 1.17464 1.27758 1.42425 0.85419 0.77678 0.79897 0.77935 1.20073 1.21617 1.20865 1.21660 0.96444 0.88084 0.94418 1.22706 0.84135 0.94903 0.95500 0.94295 1.86672 1.32823 1.60498 1.56442 1.22273 1.00655 0.97760 0.82460 1.47939 1.25140 1.46140 1.14164 1.22193 0.93322 0.92211 0.99671 1.20964 0.80697 0.81526 0.87867 1.90744 1.51380 1.33165 1.69743 1.20059 0.98372 0.92702 0.93356 0.83905 1.21606 1.01319 0.95614 0.96222 1.21635 0.96761 1.00166 0.95878 1.20195 0.99361 0.94209 0.93906 1.22256 0.93842 0.97045 1.02180 1.74817 1.23832 1.09491 1.07086 1.78514 0.97241 1.19117 1.13425 1.44724 1.21138 1.17112 1.25722 0.69428 1.21442 1.02144 0.93860 0.96111 0.97644 0.97355 0.94946 0.94423 0.93523 0.90375 0.77666 0.91065 0.85744 0.91598 0.87498 0.90119 0.92146 0.89779 0.89420 0.87972 0.87832 0.89683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 9.21 8.60 127.77 1.10 10.31 16 2 N -0.61 -30.60 2.89 -726.90 -2.10 -32.70 16 3 C -0.27 -15.27 9.66 84.03 0.81 -14.46 16 4 H 0.06 3.49 7.83 -2.91 -0.02 3.47 16 5 C -0.05 -2.87 5.23 84.86 0.44 -2.43 16 6 N -0.93 -56.62 10.47 21.65 0.23 -56.39 16 7 Si 0.96 46.90 29.56 68.60 2.03 48.93 16 8 H -0.27 -12.86 7.11 99.48 0.71 -12.15 16 9 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 10 H -0.28 -13.63 7.11 99.48 0.71 -12.92 16 11 C 0.12 4.52 5.37 86.38 0.46 4.99 16 12 C 0.09 3.11 3.48 30.59 0.11 3.22 16 13 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 14 O -0.56 -18.15 12.24 -148.98 -1.82 -19.97 16 15 C 0.09 2.15 5.11 86.38 0.44 2.59 16 16 N -0.60 -12.23 2.80 -846.76 -2.37 -14.60 16 17 C 0.07 0.72 9.28 127.77 1.19 1.91 16 18 C 0.50 12.91 6.64 87.66 0.58 13.49 16 19 O -0.57 -21.07 15.68 -3.02 -0.05 -21.12 16 20 C -0.02 -0.39 2.12 -12.19 -0.03 -0.42 16 21 H 0.14 1.69 6.33 -2.39 -0.02 1.67 16 22 C -0.11 -2.03 5.04 30.78 0.16 -1.87 16 23 C -0.11 -1.27 5.89 30.78 0.18 -1.09 16 24 C -0.04 -0.57 6.31 29.96 0.19 -0.38 16 25 C -0.01 -0.27 7.11 41.75 0.30 0.03 16 26 N -0.29 -7.49 12.40 -48.98 -0.61 -8.10 16 27 N -0.10 -2.54 13.40 37.02 0.50 -2.05 16 28 N -0.37 -6.76 6.92 -48.27 -0.33 -7.09 16 29 H 0.46 5.65 8.96 -219.67 -1.97 3.68 16 30 C 0.00 0.02 6.38 41.50 0.26 0.29 16 31 H 0.01 0.29 7.34 -2.39 -0.02 0.27 16 32 H 0.01 0.42 7.27 -2.38 -0.02 0.40 16 33 H 0.03 1.28 7.84 -2.39 -0.02 1.26 16 34 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 35 H 0.05 1.77 8.04 -2.39 -0.02 1.75 16 36 H 0.08 2.30 7.86 -2.38 -0.02 2.28 16 37 H 0.38 8.26 9.05 -74.05 -0.67 7.59 16 38 H 0.07 1.95 7.49 -2.39 -0.02 1.94 16 39 H 0.12 1.74 7.86 -2.39 -0.02 1.72 16 40 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.11 0.57 7.83 -2.39 -0.02 0.56 16 42 H 0.08 0.50 6.52 -2.39 -0.02 0.49 16 43 H 0.06 1.47 7.47 -2.39 -0.02 1.45 16 44 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 45 H 0.09 0.77 8.12 -2.38 -0.02 0.75 16 46 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 47 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 48 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -84.67 386.85 0.02 -84.64 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: -1.64 Total: 12.28 kcal Atomic # 6 Polarization: 9.98 SS G_CDS: 6.19 Total: 16.17 kcal Atomic # 7 Polarization: -116.24 SS G_CDS: -4.69 Total: -120.93 kcal Atomic # 8 Polarization: -39.22 SS G_CDS: -1.87 Total: -41.09 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 2.03 Total: 48.93 kcal Total: -84.67 0.02 -84.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284509670.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.244 kcal (2) G-P(sol) polarization free energy of solvation -84.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds