Wall clock time and date at job start Tue Mar 31 2020 21:24:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.36938 * 120.00052 * 2 1 4 4 H 1.08002 * 120.00137 * 203.42304 * 3 2 1 5 5 C 1.38809 * 120.00192 * 23.42106 * 3 2 1 6 6 N 1.31624 * 119.99947 * 10.27450 * 5 3 2 7 7 Si 1.86797 * 120.00540 * 190.27921 * 5 3 2 8 8 H 1.48500 * 109.46880 * 359.97438 * 7 5 3 9 9 H 1.48496 * 109.47385 * 119.99860 * 7 5 3 10 10 H 1.48501 * 109.47220 * 240.00099 * 7 5 3 11 11 C 1.46502 * 120.00215 * 180.02562 * 2 1 3 12 12 C 1.53006 * 109.47121 * 89.99779 * 11 2 1 13 13 H 1.09005 * 109.46796 * 305.00387 * 12 11 2 14 14 O 1.42904 * 109.46767 * 65.00323 * 12 11 2 15 15 C 1.53001 * 109.46807 * 185.00190 * 12 11 2 16 16 N 1.46503 * 109.46671 * 180.02562 * 15 12 11 17 17 C 1.46501 * 119.99927 * 269.99926 * 16 15 12 18 18 C 1.34779 * 120.00055 * 89.99944 * 16 15 12 19 19 O 1.21276 * 119.99981 * 4.92963 * 18 16 15 20 20 C 1.50706 * 119.99640 * 184.93041 * 18 16 15 21 21 H 1.08996 * 109.72279 * 327.50258 * 20 18 16 22 22 C 1.53442 * 109.67536 * 88.08343 * 20 18 16 23 23 C 1.53105 * 109.55000 * 169.43198 * 22 20 18 24 24 C 1.53419 * 109.58127 * 289.94120 * 23 22 20 25 25 C 1.50597 * 108.33429 * 49.82535 * 24 23 22 26 26 N 1.32911 * 129.16377 * 163.42231 * 25 24 23 27 27 N 1.29023 * 108.63819 * 180.11857 * 26 25 24 28 28 N 1.29110 * 110.25462 * 359.73323 * 27 26 25 29 29 H 0.96998 * 126.00265 * 179.97438 * 28 27 26 30 30 C 1.34393 * 107.98700 * 0.34479 * 28 27 26 31 31 H 1.09007 * 109.47435 * 265.84340 * 1 2 3 32 32 H 1.09002 * 109.47631 * 25.84550 * 1 2 3 33 33 H 1.09003 * 109.47509 * 145.84715 * 1 2 3 34 34 H 0.96994 * 120.00546 * 180.02562 * 6 5 3 35 35 H 1.09004 * 109.47074 * 330.00114 * 11 2 1 36 36 H 1.08994 * 109.47077 * 209.99723 * 11 2 1 37 37 H 0.96698 * 113.99891 * 60.00303 * 14 12 11 38 38 H 1.08994 * 109.47249 * 60.00356 * 15 12 11 39 39 H 1.08993 * 109.47264 * 299.99816 * 15 12 11 40 40 H 1.09000 * 109.47439 * 271.53365 * 17 16 15 41 41 H 1.08998 * 109.47288 * 31.52800 * 17 16 15 42 42 H 1.09000 * 109.47259 * 151.52916 * 17 16 15 43 43 H 1.08997 * 109.46817 * 49.40338 * 22 20 18 44 44 H 1.09002 * 109.44144 * 289.44257 * 22 20 18 45 45 H 1.09003 * 109.45440 * 169.90620 * 23 22 20 46 46 H 1.09001 * 109.45118 * 49.97109 * 23 22 20 47 47 H 1.09004 * 109.69433 * 290.11596 * 24 23 22 48 48 H 1.09004 * 109.69446 * 169.53543 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1629 1.2245 -0.3718 5 6 1.5414 2.3385 0.4778 6 7 0.3917 2.2607 1.1138 7 14 2.3544 4.0001 0.2181 8 1 3.6304 3.8170 -0.5190 9 1 1.4494 4.8766 -0.5679 10 1 2.6300 4.6277 1.5355 11 6 2.1975 -1.2687 -0.0006 12 6 2.4525 -1.7098 -1.4433 13 1 1.5060 -1.7540 -1.9823 14 8 3.3209 -0.7715 -2.0818 15 6 3.1060 -3.0932 -1.4457 16 7 3.3507 -3.5152 -2.8271 17 6 2.3263 -4.2679 -3.5554 18 6 4.5182 -3.2110 -3.4279 19 8 5.4005 -2.6671 -2.7983 20 6 4.7271 -3.5468 -4.8822 21 1 4.1836 -4.4583 -5.1310 22 6 4.2255 -2.3901 -5.7567 23 6 4.6727 -2.6109 -7.2043 24 6 6.1912 -2.4190 -7.3082 25 6 6.8474 -3.2395 -6.2293 26 7 8.1167 -3.6172 -6.1168 27 7 8.2460 -4.3126 -5.0377 28 7 7.1120 -4.4058 -4.4275 29 1 6.9493 -4.8772 -3.5955 30 6 6.1952 -3.7418 -5.1519 31 1 -0.3634 -0.0745 1.0250 32 1 -0.3634 0.9249 -0.4480 33 1 -0.3634 -0.8504 -0.5769 34 1 -0.0336 3.0661 1.4474 35 1 1.6084 -2.0286 0.5129 36 1 3.1498 -1.1386 0.5133 37 1 4.1836 -0.6804 -1.6546 38 1 2.4436 -3.8088 -0.9587 39 1 4.0523 -3.0489 -0.9067 40 1 2.4606 -5.3341 -3.3733 41 1 1.3380 -3.9624 -3.2120 42 1 2.4181 -4.0672 -4.6228 43 1 4.6382 -1.4508 -5.3885 44 1 3.1370 -2.3494 -5.7152 45 1 4.1708 -1.8929 -7.8528 46 1 4.4126 -3.6231 -7.5141 47 1 6.4388 -1.3664 -7.1708 48 1 6.5377 -2.7537 -8.2860 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284509671.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:24:29 Heat of formation + Delta-G solvation = 33.719620 kcal Electronic energy + Delta-G solvation = -30615.332482 eV Core-core repulsion = 26515.322213 eV Total energy + Delta-G solvation = -4100.010269 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -43.65452 -40.32617 -37.63172 -36.87884 -35.53335 -34.57940 -33.97352 -31.50000 -30.98423 -30.41431 -29.45094 -27.17004 -26.16155 -25.71430 -24.47980 -23.33018 -22.91149 -22.04901 -20.50235 -20.06466 -19.57851 -18.15015 -17.71417 -16.84997 -16.33572 -16.18278 -15.87674 -15.28292 -15.14265 -14.83410 -14.57072 -14.44714 -14.07027 -13.97913 -13.66452 -13.53588 -13.26814 -13.18180 -12.86546 -12.71042 -12.42780 -11.92972 -11.84660 -11.70060 -11.64363 -11.55355 -11.33972 -11.09339 -10.87165 -10.84691 -10.65607 -10.62772 -10.52174 -10.36973 -10.01880 -9.90798 -9.86405 -9.68013 -9.08721 -8.71033 -8.41276 -6.68056 -5.70347 -3.14306 1.35312 2.31583 2.35715 2.53552 2.80087 3.41173 3.48553 3.52167 3.88677 4.16328 4.22279 4.43596 4.52967 4.56167 4.72491 4.79517 4.85189 4.94037 4.99760 5.01576 5.12829 5.16990 5.31927 5.34533 5.39543 5.47822 5.55309 5.58370 5.62134 5.71818 5.75991 5.82575 5.89167 5.96720 5.99319 6.02715 6.33618 6.44168 6.62622 6.68061 6.77218 7.15957 7.37720 7.69185 7.88408 7.95816 8.28187 8.32202 8.45977 9.27625 9.89057 10.37378 11.36741 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.015418 B = 0.002940 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.585407 B = 9521.380168 C =10148.978824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.593 5.593 3 C -0.237 4.237 4 H 0.070 0.930 5 C -0.005 4.005 6 N -0.915 5.915 7 Si 0.905 3.095 8 H -0.278 1.278 9 H -0.290 1.290 10 H -0.292 1.292 11 C 0.124 3.876 12 C 0.073 3.927 13 H 0.086 0.914 14 O -0.542 6.542 15 C 0.079 3.921 16 N -0.603 5.603 17 C 0.071 3.929 18 C 0.520 3.480 19 O -0.529 6.529 20 C -0.033 4.033 21 H 0.109 0.891 22 C -0.105 4.105 23 C -0.116 4.116 24 C -0.036 4.036 25 C -0.011 4.011 26 N -0.261 5.261 27 N -0.088 5.088 28 N -0.369 5.369 29 H 0.447 0.553 30 C 0.010 3.990 31 H 0.016 0.984 32 H 0.061 0.939 33 H -0.012 1.012 34 H 0.250 0.750 35 H 0.042 0.958 36 H 0.050 0.950 37 H 0.368 0.632 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.057 0.943 41 H 0.077 0.923 42 H 0.074 0.926 43 H 0.084 0.916 44 H 0.085 0.915 45 H 0.083 0.917 46 H 0.069 0.931 47 H 0.086 0.914 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.678 -18.029 -14.693 23.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.315 5.315 3 C -0.367 4.367 4 H 0.088 0.912 5 C -0.201 4.201 6 N -0.561 5.561 7 Si 0.735 3.265 8 H -0.203 1.203 9 H -0.217 1.217 10 H -0.219 1.219 11 C -0.005 4.005 12 C 0.009 3.991 13 H 0.104 0.896 14 O -0.346 6.346 15 C -0.044 4.044 16 N -0.336 5.336 17 C -0.072 4.072 18 C 0.307 3.693 19 O -0.405 6.405 20 C -0.057 4.057 21 H 0.127 0.873 22 C -0.143 4.143 23 C -0.154 4.154 24 C -0.075 4.075 25 C -0.151 4.151 26 N -0.126 5.126 27 N -0.067 5.067 28 N -0.087 5.087 29 H 0.292 0.708 30 C -0.127 4.127 31 H 0.035 0.965 32 H 0.080 0.920 33 H 0.007 0.993 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.069 0.931 37 H 0.214 0.786 38 H 0.100 0.900 39 H 0.103 0.897 40 H 0.075 0.925 41 H 0.096 0.904 42 H 0.092 0.908 43 H 0.103 0.897 44 H 0.103 0.897 45 H 0.102 0.898 46 H 0.088 0.912 47 H 0.105 0.895 48 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 5.090 -17.854 -14.741 23.706 hybrid contribution -0.600 0.696 1.061 1.403 sum 4.490 -17.158 -13.680 22.399 Atomic orbital electron populations 1.20804 0.82683 0.97266 0.97445 1.43752 1.01680 1.00430 1.85596 1.19266 0.98388 0.85479 1.33578 0.91211 1.25025 0.97834 0.98632 0.98657 1.70069 1.18183 1.27053 1.40803 0.86162 0.78795 0.84260 0.77250 1.20265 1.21734 1.21885 1.21315 0.96885 0.89557 0.92715 1.23155 0.92854 0.85416 0.97682 0.89590 1.86547 1.28825 1.63004 1.56175 1.22459 1.02373 0.98212 0.81396 1.47718 1.15984 1.55282 1.14603 1.21916 0.92421 0.95585 0.97293 1.20220 0.82141 0.78833 0.88123 1.90722 1.42389 1.41794 1.65554 1.20023 0.89243 1.02221 0.94174 0.87315 1.21574 1.01729 0.97064 0.93947 1.21647 0.94816 1.02897 0.96079 1.20012 0.93592 0.98692 0.95189 1.21658 0.90489 1.04126 0.98816 1.74811 1.17041 1.10256 1.10521 1.78553 1.05511 1.18766 1.03835 1.44595 1.06635 1.36686 1.20751 0.70769 1.21189 0.93865 1.02485 0.95143 0.96531 0.92022 0.99318 0.93937 0.94010 0.93140 0.78581 0.89956 0.89676 0.92489 0.90391 0.90764 0.89748 0.89687 0.89796 0.91212 0.89530 0.89570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.96 9.00 59.84 0.54 4.50 16 2 N -0.59 -14.63 2.90 -181.12 -0.53 -15.16 16 3 C -0.24 -6.54 9.22 -15.06 -0.14 -6.68 16 4 H 0.07 1.92 7.55 -52.49 -0.40 1.52 16 5 C 0.00 -0.13 5.10 -17.43 -0.09 -0.22 16 6 N -0.91 -26.88 10.64 55.49 0.59 -26.29 16 7 Si 0.90 22.45 29.57 -169.99 -5.03 17.42 16 8 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 9 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 10 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 11 C 0.12 2.38 5.37 -4.04 -0.02 2.36 16 12 C 0.07 1.16 3.48 -26.73 -0.09 1.07 16 13 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 14 O -0.54 -10.19 11.48 -37.19 -0.43 -10.62 16 15 C 0.08 0.94 5.18 -4.04 -0.02 0.92 16 16 N -0.60 -6.17 2.83 -181.57 -0.51 -6.68 16 17 C 0.07 0.46 10.01 59.85 0.60 1.06 16 18 C 0.52 6.04 6.15 -10.98 -0.07 5.97 16 19 O -0.53 -8.14 14.83 3.61 0.05 -8.09 16 20 C -0.03 -0.29 2.04 -92.77 -0.19 -0.48 16 21 H 0.11 0.64 6.54 -51.93 -0.34 0.30 16 22 C -0.10 -0.88 5.11 -26.45 -0.14 -1.01 16 23 C -0.12 -0.75 5.90 -26.46 -0.16 -0.90 16 24 C -0.04 -0.30 6.30 -27.72 -0.17 -0.48 16 25 C -0.01 -0.13 7.11 -83.12 -0.59 -0.72 16 26 N -0.26 -3.74 12.40 33.16 0.41 -3.33 16 27 N -0.09 -1.21 13.40 60.35 0.81 -0.40 16 28 N -0.37 -4.15 6.70 33.39 0.22 -3.93 16 29 H 0.45 3.89 8.96 -190.07 -1.70 2.19 16 30 C 0.01 0.11 5.94 -82.50 -0.49 -0.38 16 31 H 0.02 0.43 7.85 -51.93 -0.41 0.02 16 32 H 0.06 1.66 6.65 -51.93 -0.35 1.31 16 33 H -0.01 -0.24 8.10 -51.93 -0.42 -0.66 16 34 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 35 H 0.04 0.72 8.07 -51.93 -0.42 0.30 16 36 H 0.05 0.98 8.04 -51.93 -0.42 0.57 16 37 H 0.37 6.77 8.61 45.56 0.39 7.16 16 38 H 0.08 0.80 8.07 -51.93 -0.42 0.38 16 39 H 0.08 1.11 7.36 -51.93 -0.38 0.73 16 40 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 41 H 0.08 0.50 8.08 -51.93 -0.42 0.08 16 42 H 0.07 0.36 5.48 -51.93 -0.28 0.08 16 43 H 0.08 0.94 8.08 -51.93 -0.42 0.52 16 44 H 0.08 0.61 7.42 -51.93 -0.39 0.23 16 45 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.07 0.36 8.12 -51.93 -0.42 -0.06 16 47 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 48 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 383.98 15.07 5.79 5.79 Total: -1.00 -35.83 383.98 -7.69 -43.51 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -8.04 Total: 2.78 kcal Atomic # 6 Polarization: 6.03 SS G_CDS: -1.03 Total: 5.00 kcal Atomic # 7 Polarization: -56.78 SS G_CDS: 0.99 Total: -55.79 kcal Atomic # 8 Polarization: -18.33 SS G_CDS: -0.37 Total: -18.71 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.03 Total: 17.42 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.83 -7.69 -43.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284509671.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.232 kcal (2) G-P(sol) polarization free energy of solvation -35.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds