Wall clock time and date at job start Tue Mar 31 2020 21:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.36938 * 120.00052 * 2 1 4 4 H 1.08002 * 120.00137 * 203.42304 * 3 2 1 5 5 C 1.38809 * 120.00192 * 23.42106 * 3 2 1 6 6 N 1.31624 * 119.99947 * 10.27450 * 5 3 2 7 7 Si 1.86797 * 120.00540 * 190.27921 * 5 3 2 8 8 H 1.48500 * 109.46880 * 359.97438 * 7 5 3 9 9 H 1.48496 * 109.47385 * 119.99860 * 7 5 3 10 10 H 1.48501 * 109.47220 * 240.00099 * 7 5 3 11 11 C 1.46502 * 120.00215 * 180.02562 * 2 1 3 12 12 C 1.53006 * 109.47121 * 89.99779 * 11 2 1 13 13 H 1.09005 * 109.46796 * 305.00387 * 12 11 2 14 14 O 1.42904 * 109.46767 * 65.00323 * 12 11 2 15 15 C 1.53001 * 109.46807 * 185.00190 * 12 11 2 16 16 N 1.46503 * 109.46671 * 180.02562 * 15 12 11 17 17 C 1.46501 * 119.99927 * 269.99926 * 16 15 12 18 18 C 1.34779 * 120.00055 * 89.99944 * 16 15 12 19 19 O 1.21276 * 119.99981 * 4.92963 * 18 16 15 20 20 C 1.50706 * 119.99640 * 184.93041 * 18 16 15 21 21 H 1.08996 * 109.72279 * 327.50258 * 20 18 16 22 22 C 1.53442 * 109.67536 * 88.08343 * 20 18 16 23 23 C 1.53105 * 109.55000 * 169.43198 * 22 20 18 24 24 C 1.53419 * 109.58127 * 289.94120 * 23 22 20 25 25 C 1.50597 * 108.33429 * 49.82535 * 24 23 22 26 26 N 1.32911 * 129.16377 * 163.42231 * 25 24 23 27 27 N 1.29023 * 108.63819 * 180.11857 * 26 25 24 28 28 N 1.29110 * 110.25462 * 359.73323 * 27 26 25 29 29 H 0.96998 * 126.00265 * 179.97438 * 28 27 26 30 30 C 1.34393 * 107.98700 * 0.34479 * 28 27 26 31 31 H 1.09007 * 109.47435 * 265.84340 * 1 2 3 32 32 H 1.09002 * 109.47631 * 25.84550 * 1 2 3 33 33 H 1.09003 * 109.47509 * 145.84715 * 1 2 3 34 34 H 0.96994 * 120.00546 * 180.02562 * 6 5 3 35 35 H 1.09004 * 109.47074 * 330.00114 * 11 2 1 36 36 H 1.08994 * 109.47077 * 209.99723 * 11 2 1 37 37 H 0.96698 * 113.99891 * 60.00303 * 14 12 11 38 38 H 1.08994 * 109.47249 * 60.00356 * 15 12 11 39 39 H 1.08993 * 109.47264 * 299.99816 * 15 12 11 40 40 H 1.09000 * 109.47439 * 271.53365 * 17 16 15 41 41 H 1.08998 * 109.47288 * 31.52800 * 17 16 15 42 42 H 1.09000 * 109.47259 * 151.52916 * 17 16 15 43 43 H 1.08997 * 109.46817 * 49.40338 * 22 20 18 44 44 H 1.09002 * 109.44144 * 289.44257 * 22 20 18 45 45 H 1.09003 * 109.45440 * 169.90620 * 23 22 20 46 46 H 1.09001 * 109.45118 * 49.97109 * 23 22 20 47 47 H 1.09004 * 109.69433 * 290.11596 * 24 23 22 48 48 H 1.09004 * 109.69446 * 169.53543 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1629 1.2245 -0.3718 5 6 1.5414 2.3385 0.4778 6 7 0.3917 2.2607 1.1138 7 14 2.3544 4.0001 0.2181 8 1 3.6304 3.8170 -0.5190 9 1 1.4494 4.8766 -0.5679 10 1 2.6300 4.6277 1.5355 11 6 2.1975 -1.2687 -0.0006 12 6 2.4525 -1.7098 -1.4433 13 1 1.5060 -1.7540 -1.9823 14 8 3.3209 -0.7715 -2.0818 15 6 3.1060 -3.0932 -1.4457 16 7 3.3507 -3.5152 -2.8271 17 6 2.3263 -4.2679 -3.5554 18 6 4.5182 -3.2110 -3.4279 19 8 5.4005 -2.6671 -2.7983 20 6 4.7271 -3.5468 -4.8822 21 1 4.1836 -4.4583 -5.1310 22 6 4.2255 -2.3901 -5.7567 23 6 4.6727 -2.6109 -7.2043 24 6 6.1912 -2.4190 -7.3082 25 6 6.8474 -3.2395 -6.2293 26 7 8.1167 -3.6172 -6.1168 27 7 8.2460 -4.3126 -5.0377 28 7 7.1120 -4.4058 -4.4275 29 1 6.9493 -4.8772 -3.5955 30 6 6.1952 -3.7418 -5.1519 31 1 -0.3634 -0.0745 1.0250 32 1 -0.3634 0.9249 -0.4480 33 1 -0.3634 -0.8504 -0.5769 34 1 -0.0336 3.0661 1.4474 35 1 1.6084 -2.0286 0.5129 36 1 3.1498 -1.1386 0.5133 37 1 4.1836 -0.6804 -1.6546 38 1 2.4436 -3.8088 -0.9587 39 1 4.0523 -3.0489 -0.9067 40 1 2.4606 -5.3341 -3.3733 41 1 1.3380 -3.9624 -3.2120 42 1 2.4181 -4.0672 -4.6228 43 1 4.6382 -1.4508 -5.3885 44 1 3.1370 -2.3494 -5.7152 45 1 4.1708 -1.8929 -7.8528 46 1 4.4126 -3.6231 -7.5141 47 1 6.4388 -1.3664 -7.1708 48 1 6.5377 -2.7537 -8.2860 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284509671.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:24:28 Heat of formation + Delta-G solvation = 6.151101 kcal Electronic energy + Delta-G solvation = -30616.527943 eV Core-core repulsion = 26515.322213 eV Total energy + Delta-G solvation = -4101.205730 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.54399 -41.21727 -38.90604 -37.73983 -36.80989 -36.04710 -34.87944 -33.32456 -31.96213 -31.23141 -30.67252 -28.13028 -27.83269 -27.06949 -25.43873 -24.34572 -23.67502 -23.44287 -22.12696 -20.87187 -20.38466 -18.99882 -18.84778 -18.42521 -17.58210 -17.13377 -16.83387 -16.74268 -16.34217 -16.17388 -15.70664 -15.35998 -15.17887 -14.99414 -14.76112 -14.69451 -14.48535 -14.36008 -13.86407 -13.70028 -13.33090 -13.19236 -12.99758 -12.84056 -12.69286 -12.61693 -12.49705 -12.44953 -12.29722 -12.22252 -12.08814 -11.95739 -11.86194 -11.81588 -11.60359 -11.35800 -11.17789 -10.80605 -10.56354 -9.94872 -9.58984 -8.65274 -7.82521 -5.27135 0.47368 1.40500 1.42851 1.45088 1.48671 1.55258 1.74559 2.00573 2.51280 3.12650 3.32496 3.42858 3.48357 3.59167 3.75987 3.78383 3.92565 4.05419 4.10504 4.21695 4.28358 4.30872 4.32647 4.44896 4.50845 4.58665 4.61673 4.69395 4.81550 4.86191 4.90841 4.92653 4.95514 5.02086 5.10138 5.17681 5.26907 5.31684 5.38791 5.41472 5.49789 5.64758 5.73970 5.83369 6.36536 6.37538 6.90602 7.11460 7.19344 7.35328 7.90476 8.31889 9.22346 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.015418 B = 0.002940 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.585407 B = 9521.380168 C =10148.978824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.176 3.824 2 N -0.612 5.612 3 C -0.237 4.237 4 H 0.065 0.935 5 C -0.060 4.060 6 N -0.943 5.943 7 Si 0.962 3.038 8 H -0.273 1.273 9 H -0.292 1.292 10 H -0.293 1.293 11 C 0.120 3.880 12 C 0.084 3.916 13 H 0.085 0.915 14 O -0.561 6.561 15 C 0.090 3.910 16 N -0.600 5.600 17 C 0.060 3.940 18 C 0.516 3.484 19 O -0.575 6.575 20 C -0.024 4.024 21 H 0.151 0.849 22 C -0.104 4.104 23 C -0.106 4.106 24 C -0.039 4.039 25 C -0.023 4.023 26 N -0.294 5.294 27 N -0.118 5.118 28 N -0.361 5.361 29 H 0.456 0.544 30 C 0.012 3.988 31 H -0.005 1.005 32 H 0.028 0.972 33 H 0.028 0.972 34 H 0.246 0.754 35 H 0.066 0.934 36 H 0.041 0.959 37 H 0.366 0.634 38 H 0.115 0.885 39 H 0.072 0.928 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.094 0.906 43 H 0.049 0.951 44 H 0.103 0.897 45 H 0.103 0.897 46 H 0.092 0.908 47 H 0.079 0.921 48 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.467 -20.071 -16.366 26.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.335 5.335 3 C -0.367 4.367 4 H 0.083 0.917 5 C -0.253 4.253 6 N -0.592 5.592 7 Si 0.791 3.209 8 H -0.198 1.198 9 H -0.218 1.218 10 H -0.220 1.220 11 C -0.007 4.007 12 C 0.022 3.978 13 H 0.103 0.897 14 O -0.365 6.365 15 C -0.034 4.034 16 N -0.331 5.331 17 C -0.082 4.082 18 C 0.303 3.697 19 O -0.455 6.455 20 C -0.048 4.048 21 H 0.168 0.832 22 C -0.142 4.142 23 C -0.144 4.144 24 C -0.078 4.078 25 C -0.164 4.164 26 N -0.159 5.159 27 N -0.096 5.096 28 N -0.080 5.080 29 H 0.303 0.697 30 C -0.126 4.126 31 H 0.013 0.987 32 H 0.047 0.953 33 H 0.046 0.954 34 H 0.055 0.945 35 H 0.085 0.915 36 H 0.059 0.941 37 H 0.212 0.788 38 H 0.133 0.867 39 H 0.090 0.910 40 H 0.102 0.898 41 H 0.100 0.900 42 H 0.112 0.888 43 H 0.068 0.932 44 H 0.121 0.879 45 H 0.121 0.879 46 H 0.111 0.889 47 H 0.097 0.903 48 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 3.885 -19.963 -16.435 26.148 hybrid contribution -0.241 1.259 1.594 2.045 sum 3.643 -18.704 -14.841 24.153 Atomic orbital electron populations 1.20552 0.82783 0.97171 0.96422 1.43984 1.02005 1.01534 1.85960 1.19476 0.98215 0.86892 1.32153 0.91712 1.25691 0.98696 1.01575 0.99384 1.70208 1.19400 1.27305 1.42246 0.85265 0.77965 0.80757 0.76866 1.19817 1.21849 1.21974 1.21547 0.96192 0.87905 0.95044 1.22943 0.92831 0.87209 0.94837 0.89748 1.86520 1.28995 1.64310 1.56678 1.22168 1.01947 0.96331 0.82910 1.47773 1.16436 1.54853 1.14047 1.22270 0.91285 0.96566 0.98043 1.20705 0.81963 0.77998 0.88986 1.90710 1.44081 1.43914 1.66755 1.20160 0.88126 1.04178 0.92290 0.83214 1.21597 1.02588 0.95129 0.94898 1.21646 0.92947 1.04850 0.94972 1.20197 0.95102 0.97694 0.94824 1.22278 0.89877 1.04197 1.00062 1.74762 1.18685 1.11244 1.11160 1.78486 1.06663 1.20012 1.04436 1.44632 1.06238 1.36309 1.20859 0.69730 1.21598 0.94851 1.01571 0.94580 0.98720 0.95294 0.95369 0.94480 0.91544 0.94067 0.78773 0.86724 0.90983 0.89845 0.90001 0.88763 0.93194 0.87850 0.87897 0.88945 0.90293 0.88254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.48 9.00 127.77 1.15 9.63 16 2 N -0.61 -29.97 2.90 -726.93 -2.11 -32.08 16 3 C -0.24 -13.12 9.22 84.03 0.77 -12.34 16 4 H 0.07 3.59 7.55 -2.91 -0.02 3.57 16 5 C -0.06 -3.41 5.10 84.86 0.43 -2.98 16 6 N -0.94 -56.41 10.64 21.65 0.23 -56.18 16 7 Si 0.96 46.83 29.57 68.60 2.03 48.86 16 8 H -0.27 -12.94 7.11 99.48 0.71 -12.24 16 9 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 10 H -0.29 -14.16 7.11 99.48 0.71 -13.46 16 11 C 0.12 4.43 5.37 86.38 0.46 4.89 16 12 C 0.08 2.55 3.48 30.60 0.11 2.66 16 13 H 0.08 2.61 8.14 -2.38 -0.02 2.60 16 14 O -0.56 -20.81 11.48 -147.11 -1.69 -22.50 16 15 C 0.09 1.91 5.18 86.38 0.45 2.36 16 16 N -0.60 -10.32 2.83 -846.76 -2.39 -12.71 16 17 C 0.06 0.47 10.01 127.77 1.28 1.75 16 18 C 0.52 10.91 6.15 87.66 0.54 11.45 16 19 O -0.58 -17.52 14.83 -1.15 -0.02 -17.53 16 20 C -0.02 -0.36 2.04 -12.19 -0.02 -0.39 16 21 H 0.15 1.00 6.54 -2.39 -0.02 0.99 16 22 C -0.10 -1.45 5.11 30.78 0.16 -1.29 16 23 C -0.11 -1.01 5.90 30.77 0.18 -0.83 16 24 C -0.04 -0.61 6.30 29.96 0.19 -0.42 16 25 C -0.02 -0.53 7.11 41.75 0.30 -0.23 16 26 N -0.29 -8.51 12.40 -48.99 -0.61 -9.12 16 27 N -0.12 -3.29 13.40 37.02 0.50 -2.80 16 28 N -0.36 -7.97 6.70 -48.27 -0.32 -8.29 16 29 H 0.46 7.71 8.96 -219.68 -1.97 5.74 16 30 C 0.01 0.24 5.94 41.50 0.25 0.48 16 31 H -0.01 -0.29 7.85 -2.38 -0.02 -0.31 16 32 H 0.03 1.56 6.65 -2.39 -0.02 1.54 16 33 H 0.03 1.11 8.10 -2.39 -0.02 1.09 16 34 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 35 H 0.07 2.12 8.07 -2.39 -0.02 2.10 16 36 H 0.04 1.59 8.04 -2.39 -0.02 1.57 16 37 H 0.37 13.68 8.61 -74.06 -0.64 13.05 16 38 H 0.11 1.73 8.07 -2.39 -0.02 1.71 16 39 H 0.07 1.77 7.36 -2.39 -0.02 1.75 16 40 H 0.08 0.30 8.14 -2.39 -0.02 0.28 16 41 H 0.08 0.65 8.08 -2.39 -0.02 0.63 16 42 H 0.09 0.39 5.48 -2.39 -0.01 0.37 16 43 H 0.05 1.07 8.08 -2.39 -0.02 1.05 16 44 H 0.10 1.08 7.42 -2.39 -0.02 1.06 16 45 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 46 H 0.09 0.52 8.12 -2.39 -0.02 0.50 16 47 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 48 H 0.10 1.25 8.14 -2.38 -0.02 1.23 16 Total: -1.00 -80.96 383.98 0.24 -80.71 By element: Atomic # 1 Polarization: 18.51 SS G_CDS: -1.61 Total: 16.90 kcal Atomic # 6 Polarization: 8.51 SS G_CDS: 6.24 Total: 14.75 kcal Atomic # 7 Polarization: -116.48 SS G_CDS: -4.71 Total: -121.18 kcal Atomic # 8 Polarization: -38.33 SS G_CDS: -1.71 Total: -40.04 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 2.03 Total: 48.86 kcal Total: -80.96 0.24 -80.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284509671.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.864 kcal (2) G-P(sol) polarization free energy of solvation -80.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds