Wall clock time and date at job start Tue Mar 31 2020 21:24:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36934 * 119.99899 * 2 1 4 4 H 1.08003 * 120.00220 * 201.80543 * 3 2 1 5 5 C 1.38812 * 120.00074 * 21.79720 * 3 2 1 6 6 N 1.31617 * 119.99896 * 10.22861 * 5 3 2 7 7 Si 1.86805 * 120.00098 * 190.23371 * 5 3 2 8 8 H 1.48496 * 109.47169 * 84.98453 * 7 5 3 9 9 H 1.48501 * 109.47107 * 204.98479 * 7 5 3 10 10 H 1.48501 * 109.46653 * 324.98053 * 7 5 3 11 11 C 1.46502 * 120.00012 * 179.97438 * 2 1 3 12 12 C 1.52995 * 109.47245 * 269.99804 * 11 2 1 13 13 H 1.09001 * 109.46820 * 60.00481 * 12 11 2 14 14 O 1.42898 * 109.47493 * 300.00343 * 12 11 2 15 15 C 1.53002 * 109.47274 * 180.02562 * 12 11 2 16 16 N 1.46497 * 109.47244 * 185.00494 * 15 12 11 17 17 C 1.46495 * 120.00120 * 90.00193 * 16 15 12 18 18 C 1.34773 * 119.99936 * 270.00168 * 16 15 12 19 19 O 1.21283 * 119.99968 * 4.65045 * 18 16 15 20 20 C 1.50704 * 120.00003 * 184.65384 * 18 16 15 21 21 H 1.08994 * 109.69122 * 21.40138 * 20 18 16 22 22 C 1.53433 * 109.69170 * 260.85792 * 20 18 16 23 23 C 1.53120 * 109.54888 * 190.61013 * 22 20 18 24 24 C 1.53418 * 109.61858 * 69.99447 * 23 22 20 25 25 C 1.50594 * 108.33348 * 310.18355 * 24 23 22 26 26 N 1.32916 * 129.16351 * 196.55924 * 25 24 23 27 27 N 1.29014 * 108.63384 * 179.89006 * 26 25 24 28 28 N 1.29111 * 110.26204 * 0.02562 * 27 26 25 29 29 H 0.96995 * 126.00599 * 180.02562 * 28 27 26 30 30 C 1.34397 * 107.98161 * 0.06188 * 28 27 26 31 31 H 1.09001 * 109.47468 * 275.13388 * 1 2 3 32 32 H 1.08994 * 109.47149 * 35.14109 * 1 2 3 33 33 H 1.09005 * 109.46701 * 155.13745 * 1 2 3 34 34 H 0.97000 * 119.99947 * 179.97438 * 6 5 3 35 35 H 1.09001 * 109.46819 * 150.00284 * 11 2 1 36 36 H 1.08991 * 109.47050 * 30.00533 * 11 2 1 37 37 H 0.96701 * 114.00098 * 299.99821 * 14 12 11 38 38 H 1.09006 * 109.46966 * 305.00199 * 15 12 11 39 39 H 1.09001 * 109.46928 * 65.00172 * 15 12 11 40 40 H 1.09006 * 109.47495 * 95.29540 * 17 16 15 41 41 H 1.09008 * 109.47233 * 215.29677 * 17 16 15 42 42 H 1.09000 * 109.47094 * 335.29491 * 17 16 15 43 43 H 1.09002 * 109.45350 * 310.59787 * 22 20 18 44 44 H 1.09001 * 109.45535 * 70.53927 * 22 20 18 45 45 H 1.08992 * 109.42217 * 309.94869 * 23 22 20 46 46 H 1.09001 * 109.44097 * 190.04345 * 23 22 20 47 47 H 1.08998 * 109.69166 * 190.47175 * 24 23 22 48 48 H 1.09001 * 109.72647 * 69.91753 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1717 1.2194 -0.3474 5 6 1.5300 2.3451 0.4464 6 7 0.3646 2.2761 1.0542 7 14 2.3501 4.0029 0.1843 8 1 2.0132 4.5134 -1.1689 9 1 1.8665 4.9620 1.2097 10 1 3.8224 3.8511 0.3039 11 6 2.1975 -1.2687 0.0006 12 6 2.4525 -1.7098 1.4432 13 1 1.5001 -1.8399 1.9571 14 8 3.2248 -0.7136 2.1165 15 6 3.2181 -3.0345 1.4438 16 7 3.3580 -3.5170 2.8199 17 6 2.3337 -4.3908 3.3974 18 6 4.4290 -3.1572 3.5546 19 8 5.2335 -2.3674 3.1074 20 6 4.6271 -3.7362 4.9318 21 1 4.0672 -4.6669 5.0229 22 6 4.1414 -2.7351 5.9883 23 6 4.5807 -3.2036 7.3783 24 6 6.1020 -3.0585 7.5138 25 6 6.7477 -3.6972 6.3126 26 7 8.0109 -4.0724 6.1387 27 7 8.1318 -4.5785 4.9582 28 7 6.9973 -4.5529 4.3423 29 1 6.8291 -4.8758 3.4433 30 6 6.0907 -3.9994 5.1657 31 1 -0.3634 0.0920 1.0235 32 1 -0.3633 0.8403 -0.5915 33 1 -0.3633 -0.9325 -0.4321 34 1 -0.0682 3.0861 1.3665 35 1 3.1499 -1.1386 -0.5133 36 1 1.6085 -2.0285 -0.5130 37 1 4.0873 -0.5452 1.7129 38 1 2.6711 -3.7705 0.8545 39 1 4.2064 -2.8831 1.0096 40 1 2.6370 -5.4315 3.2826 41 1 2.2156 -4.1616 4.4566 42 1 1.3864 -4.2295 2.8830 43 1 4.5708 -1.7544 5.7837 44 1 3.0539 -2.6694 5.9534 45 1 4.3022 -4.2487 7.5133 46 1 4.0890 -2.5962 8.1381 47 1 6.4393 -3.5588 8.4216 48 1 6.3685 -2.0024 7.5560 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284509673.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:24:39 Heat of formation + Delta-G solvation = 35.801536 kcal Electronic energy + Delta-G solvation = -30681.493107 eV Core-core repulsion = 26581.573116 eV Total energy + Delta-G solvation = -4099.919990 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -43.65030 -40.22764 -37.54391 -36.77631 -35.46120 -34.46613 -33.96297 -31.39827 -30.94062 -30.39920 -29.39157 -27.11441 -26.12159 -25.69757 -24.43373 -23.31817 -22.89110 -21.99051 -20.42116 -20.02854 -19.53366 -18.13585 -17.63258 -16.81600 -16.28749 -16.17545 -15.78508 -15.26416 -14.96994 -14.74598 -14.40351 -14.33810 -14.08616 -13.91201 -13.64568 -13.57492 -13.25294 -13.10669 -12.76187 -12.64890 -12.43039 -11.86820 -11.79352 -11.65168 -11.58672 -11.48496 -11.30847 -11.11401 -10.84391 -10.83231 -10.62136 -10.52628 -10.47606 -10.30124 -9.98537 -9.87150 -9.82458 -9.50986 -9.06309 -8.55582 -8.41679 -6.69341 -5.64404 -3.08348 1.35202 2.33833 2.41392 2.52785 2.86968 3.43797 3.49851 3.51042 3.91920 4.22924 4.26180 4.46462 4.56196 4.60648 4.78018 4.82561 4.91859 5.01821 5.02457 5.08641 5.15222 5.24074 5.34758 5.41383 5.49083 5.54517 5.58351 5.62129 5.67206 5.74452 5.78028 5.87911 5.96512 6.00093 6.03312 6.06170 6.39656 6.48181 6.61704 6.70470 6.78244 7.23950 7.39517 7.74092 7.86143 8.05541 8.28075 8.44082 8.60981 9.30182 9.92067 10.39424 11.41576 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.015213 B = 0.003006 C = 0.002849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.113252 B = 9312.487001 C = 9824.392625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.165 3.835 2 N -0.592 5.592 3 C -0.240 4.240 4 H 0.066 0.934 5 C 0.003 3.997 6 N -0.910 5.910 7 Si 0.904 3.096 8 H -0.290 1.290 9 H -0.292 1.292 10 H -0.281 1.281 11 C 0.123 3.877 12 C 0.073 3.927 13 H 0.084 0.916 14 O -0.529 6.529 15 C 0.079 3.921 16 N -0.606 5.606 17 C 0.074 3.926 18 C 0.515 3.485 19 O -0.518 6.518 20 C -0.032 4.032 21 H 0.108 0.892 22 C -0.106 4.106 23 C -0.116 4.116 24 C -0.036 4.036 25 C -0.010 4.010 26 N -0.260 5.260 27 N -0.087 5.087 28 N -0.373 5.373 29 H 0.447 0.553 30 C 0.010 3.990 31 H 0.028 0.972 32 H 0.046 0.954 33 H -0.007 1.007 34 H 0.250 0.750 35 H 0.045 0.955 36 H 0.042 0.958 37 H 0.365 0.635 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.055 0.945 41 H 0.070 0.930 42 H 0.079 0.921 43 H 0.084 0.916 44 H 0.084 0.916 45 H 0.069 0.931 46 H 0.083 0.917 47 H 0.086 0.914 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.844 -19.001 9.338 21.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.313 5.313 3 C -0.370 4.370 4 H 0.084 0.916 5 C -0.194 4.194 6 N -0.556 5.556 7 Si 0.734 3.266 8 H -0.217 1.217 9 H -0.218 1.218 10 H -0.206 1.206 11 C -0.006 4.006 12 C 0.009 3.991 13 H 0.101 0.899 14 O -0.332 6.332 15 C -0.044 4.044 16 N -0.339 5.339 17 C -0.070 4.070 18 C 0.301 3.699 19 O -0.392 6.392 20 C -0.056 4.056 21 H 0.126 0.874 22 C -0.144 4.144 23 C -0.154 4.154 24 C -0.075 4.075 25 C -0.150 4.150 26 N -0.125 5.125 27 N -0.066 5.066 28 N -0.091 5.091 29 H 0.292 0.708 30 C -0.126 4.126 31 H 0.046 0.954 32 H 0.065 0.935 33 H 0.011 0.989 34 H 0.060 0.940 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.210 0.790 38 H 0.098 0.902 39 H 0.099 0.901 40 H 0.073 0.927 41 H 0.089 0.911 42 H 0.098 0.902 43 H 0.103 0.897 44 H 0.103 0.897 45 H 0.088 0.912 46 H 0.102 0.898 47 H 0.104 0.896 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 5.189 -18.768 9.551 21.688 hybrid contribution -0.510 0.860 -1.092 1.480 sum 4.679 -17.908 8.459 20.351 Atomic orbital electron populations 1.20816 0.82451 0.95255 0.99416 1.43862 1.01785 1.00377 1.85324 1.19072 0.97365 0.84987 1.35540 0.91645 1.24960 0.97569 0.98353 0.98550 1.70048 1.16884 1.26698 1.41994 0.86282 0.78933 0.84233 0.77111 1.21714 1.21813 1.20626 1.21474 0.96472 0.89400 0.93270 1.23123 0.93725 0.85025 0.97247 0.89855 1.86622 1.32382 1.58946 1.55211 1.22556 1.02446 0.98226 0.81214 1.47797 1.22163 1.49477 1.14470 1.21864 0.92139 0.93321 0.99649 1.20226 0.81575 0.81875 0.86216 1.90736 1.44435 1.32516 1.71559 1.20011 0.89246 1.01451 0.94907 0.87421 1.21579 1.01876 0.98569 0.92382 1.21644 0.94757 1.02286 0.96726 1.20013 0.93706 1.00689 0.93064 1.21660 0.90537 1.05310 0.97461 1.74811 1.17216 1.12325 1.08193 1.78549 1.05281 1.20589 1.02206 1.44611 1.07032 1.41311 1.16126 0.70839 1.21214 0.94108 1.04785 0.92492 0.95367 0.93540 0.98852 0.93984 0.93646 0.93969 0.78955 0.90194 0.90123 0.92677 0.91090 0.90193 0.89731 0.89727 0.91213 0.89808 0.89567 0.89512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.03 9.00 59.85 0.54 4.57 16 2 N -0.59 -14.60 2.88 -181.13 -0.52 -15.12 16 3 C -0.24 -6.60 9.03 -15.06 -0.14 -6.73 16 4 H 0.07 1.77 7.84 -52.48 -0.41 1.36 16 5 C 0.00 0.09 5.16 -17.43 -0.09 0.00 16 6 N -0.91 -26.93 10.49 55.49 0.58 -26.35 16 7 Si 0.90 22.53 29.57 -169.99 -5.03 17.51 16 8 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 9 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 10 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 11 C 0.12 2.34 5.43 -4.04 -0.02 2.32 16 12 C 0.07 1.26 3.48 -26.73 -0.09 1.17 16 13 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 14 O -0.53 -11.21 11.34 -47.93 -0.54 -11.75 16 15 C 0.08 0.99 5.08 -4.04 -0.02 0.97 16 16 N -0.61 -6.72 2.86 -181.57 -0.52 -7.24 16 17 C 0.07 0.53 9.58 59.84 0.57 1.10 16 18 C 0.52 6.46 6.27 -10.98 -0.07 6.39 16 19 O -0.52 -8.62 14.82 -7.14 -0.11 -8.72 16 20 C -0.03 -0.31 2.10 -92.78 -0.19 -0.50 16 21 H 0.11 0.71 6.50 -51.93 -0.34 0.37 16 22 C -0.11 -0.97 5.18 -26.44 -0.14 -1.10 16 23 C -0.12 -0.80 5.89 -26.45 -0.16 -0.96 16 24 C -0.04 -0.32 6.31 -27.72 -0.17 -0.49 16 25 C -0.01 -0.12 7.11 -83.12 -0.59 -0.71 16 26 N -0.26 -3.78 12.40 33.16 0.41 -3.36 16 27 N -0.09 -1.22 13.40 60.35 0.81 -0.41 16 28 N -0.37 -4.25 6.92 33.39 0.23 -4.02 16 29 H 0.45 3.89 8.96 -190.08 -1.70 2.18 16 30 C 0.01 0.12 6.01 -82.50 -0.50 -0.38 16 31 H 0.03 0.75 7.38 -51.93 -0.38 0.36 16 32 H 0.05 1.23 7.18 -51.93 -0.37 0.86 16 33 H -0.01 -0.15 7.84 -51.93 -0.41 -0.55 16 34 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 35 H 0.05 0.85 8.03 -51.93 -0.42 0.44 16 36 H 0.04 0.70 7.86 -51.93 -0.41 0.29 16 37 H 0.36 7.46 8.63 45.56 0.39 7.85 16 38 H 0.08 0.80 8.07 -51.93 -0.42 0.38 16 39 H 0.08 1.08 7.49 -51.93 -0.39 0.69 16 40 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 41 H 0.07 0.43 6.45 -51.92 -0.33 0.09 16 42 H 0.08 0.57 8.03 -51.93 -0.42 0.15 16 43 H 0.08 1.01 8.08 -51.93 -0.42 0.59 16 44 H 0.08 0.69 7.69 -51.93 -0.40 0.29 16 45 H 0.07 0.40 8.12 -51.93 -0.42 -0.02 16 46 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 48 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 384.79 15.07 5.80 5.80 Total: -1.00 -36.36 384.79 -8.05 -44.41 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -8.10 Total: 3.61 kcal Atomic # 6 Polarization: 6.73 SS G_CDS: -1.07 Total: 5.66 kcal Atomic # 7 Polarization: -57.50 SS G_CDS: 0.99 Total: -56.51 kcal Atomic # 8 Polarization: -19.82 SS G_CDS: -0.65 Total: -20.47 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.03 Total: 17.51 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -36.36 -8.05 -44.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284509673.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.211 kcal (2) G-P(sol) polarization free energy of solvation -36.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds