Wall clock time and date at job start Tue Mar 31 2020 21:24:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36934 * 119.99899 * 2 1 4 4 H 1.08003 * 120.00220 * 201.80543 * 3 2 1 5 5 C 1.38812 * 120.00074 * 21.79720 * 3 2 1 6 6 N 1.31617 * 119.99896 * 10.22861 * 5 3 2 7 7 Si 1.86805 * 120.00098 * 190.23371 * 5 3 2 8 8 H 1.48496 * 109.47169 * 84.98453 * 7 5 3 9 9 H 1.48501 * 109.47107 * 204.98479 * 7 5 3 10 10 H 1.48501 * 109.46653 * 324.98053 * 7 5 3 11 11 C 1.46502 * 120.00012 * 179.97438 * 2 1 3 12 12 C 1.52995 * 109.47245 * 269.99804 * 11 2 1 13 13 H 1.09001 * 109.46820 * 60.00481 * 12 11 2 14 14 O 1.42898 * 109.47493 * 300.00343 * 12 11 2 15 15 C 1.53002 * 109.47274 * 180.02562 * 12 11 2 16 16 N 1.46497 * 109.47244 * 185.00494 * 15 12 11 17 17 C 1.46495 * 120.00120 * 90.00193 * 16 15 12 18 18 C 1.34773 * 119.99936 * 270.00168 * 16 15 12 19 19 O 1.21283 * 119.99968 * 4.65045 * 18 16 15 20 20 C 1.50704 * 120.00003 * 184.65384 * 18 16 15 21 21 H 1.08994 * 109.69122 * 21.40138 * 20 18 16 22 22 C 1.53433 * 109.69170 * 260.85792 * 20 18 16 23 23 C 1.53120 * 109.54888 * 190.61013 * 22 20 18 24 24 C 1.53418 * 109.61858 * 69.99447 * 23 22 20 25 25 C 1.50594 * 108.33348 * 310.18355 * 24 23 22 26 26 N 1.32916 * 129.16351 * 196.55924 * 25 24 23 27 27 N 1.29014 * 108.63384 * 179.89006 * 26 25 24 28 28 N 1.29111 * 110.26204 * 0.02562 * 27 26 25 29 29 H 0.96995 * 126.00599 * 180.02562 * 28 27 26 30 30 C 1.34397 * 107.98161 * 0.06188 * 28 27 26 31 31 H 1.09001 * 109.47468 * 275.13388 * 1 2 3 32 32 H 1.08994 * 109.47149 * 35.14109 * 1 2 3 33 33 H 1.09005 * 109.46701 * 155.13745 * 1 2 3 34 34 H 0.97000 * 119.99947 * 179.97438 * 6 5 3 35 35 H 1.09001 * 109.46819 * 150.00284 * 11 2 1 36 36 H 1.08991 * 109.47050 * 30.00533 * 11 2 1 37 37 H 0.96701 * 114.00098 * 299.99821 * 14 12 11 38 38 H 1.09006 * 109.46966 * 305.00199 * 15 12 11 39 39 H 1.09001 * 109.46928 * 65.00172 * 15 12 11 40 40 H 1.09006 * 109.47495 * 95.29540 * 17 16 15 41 41 H 1.09008 * 109.47233 * 215.29677 * 17 16 15 42 42 H 1.09000 * 109.47094 * 335.29491 * 17 16 15 43 43 H 1.09002 * 109.45350 * 310.59787 * 22 20 18 44 44 H 1.09001 * 109.45535 * 70.53927 * 22 20 18 45 45 H 1.08992 * 109.42217 * 309.94869 * 23 22 20 46 46 H 1.09001 * 109.44097 * 190.04345 * 23 22 20 47 47 H 1.08998 * 109.69166 * 190.47175 * 24 23 22 48 48 H 1.09001 * 109.72647 * 69.91753 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1717 1.2194 -0.3474 5 6 1.5300 2.3451 0.4464 6 7 0.3646 2.2761 1.0542 7 14 2.3501 4.0029 0.1843 8 1 2.0132 4.5134 -1.1689 9 1 1.8665 4.9620 1.2097 10 1 3.8224 3.8511 0.3039 11 6 2.1975 -1.2687 0.0006 12 6 2.4525 -1.7098 1.4432 13 1 1.5001 -1.8399 1.9571 14 8 3.2248 -0.7136 2.1165 15 6 3.2181 -3.0345 1.4438 16 7 3.3580 -3.5170 2.8199 17 6 2.3337 -4.3908 3.3974 18 6 4.4290 -3.1572 3.5546 19 8 5.2335 -2.3674 3.1074 20 6 4.6271 -3.7362 4.9318 21 1 4.0672 -4.6669 5.0229 22 6 4.1414 -2.7351 5.9883 23 6 4.5807 -3.2036 7.3783 24 6 6.1020 -3.0585 7.5138 25 6 6.7477 -3.6972 6.3126 26 7 8.0109 -4.0724 6.1387 27 7 8.1318 -4.5785 4.9582 28 7 6.9973 -4.5529 4.3423 29 1 6.8291 -4.8758 3.4433 30 6 6.0907 -3.9994 5.1657 31 1 -0.3634 0.0920 1.0235 32 1 -0.3633 0.8403 -0.5915 33 1 -0.3633 -0.9325 -0.4321 34 1 -0.0682 3.0861 1.3665 35 1 3.1499 -1.1386 -0.5133 36 1 1.6085 -2.0285 -0.5130 37 1 4.0873 -0.5452 1.7129 38 1 2.6711 -3.7705 0.8545 39 1 4.2064 -2.8831 1.0096 40 1 2.6370 -5.4315 3.2826 41 1 2.2156 -4.1616 4.4566 42 1 1.3864 -4.2295 2.8830 43 1 4.5708 -1.7544 5.7837 44 1 3.0539 -2.6694 5.9534 45 1 4.3022 -4.2487 7.5133 46 1 4.0890 -2.5962 8.1381 47 1 6.4393 -3.5588 8.4216 48 1 6.3685 -2.0024 7.5560 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284509673.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:24:38 Heat of formation + Delta-G solvation = 8.126558 kcal Electronic energy + Delta-G solvation = -30682.693184 eV Core-core repulsion = 26581.573116 eV Total energy + Delta-G solvation = -4101.120067 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -44.56554 -41.18880 -38.86393 -37.72694 -36.77154 -36.01245 -34.90783 -33.26840 -31.94469 -31.25100 -30.67365 -28.12325 -27.83141 -27.06600 -25.43109 -24.35545 -23.70429 -23.44109 -22.08097 -20.88131 -20.39486 -19.02166 -18.84075 -18.41497 -17.60192 -17.17561 -16.77899 -16.61521 -16.32604 -16.12399 -15.72233 -15.40061 -15.14327 -14.98213 -14.74022 -14.66645 -14.55244 -14.32971 -13.84780 -13.69455 -13.32339 -13.18022 -13.03307 -12.81327 -12.69142 -12.61777 -12.49225 -12.46885 -12.30895 -12.17986 -12.02846 -11.97795 -11.84281 -11.81110 -11.63537 -11.37912 -11.03539 -10.78317 -10.56971 -9.95331 -9.56755 -8.67810 -7.77506 -5.21443 0.44417 1.39178 1.43972 1.45531 1.48482 1.52740 1.71234 2.01435 2.53227 3.11871 3.37537 3.44406 3.48447 3.61354 3.73714 3.85695 3.91952 4.06202 4.11960 4.20643 4.28838 4.30418 4.33258 4.42683 4.52493 4.59140 4.60929 4.67822 4.80222 4.86614 4.89050 4.90809 4.95823 4.99917 5.08280 5.15809 5.29211 5.31740 5.37009 5.39354 5.51032 5.65173 5.77674 5.80904 6.36798 6.37368 7.03770 7.14221 7.22370 7.32945 7.93229 8.33634 9.26530 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.015213 B = 0.003006 C = 0.002849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.113252 B = 9312.487001 C = 9824.392625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.610 5.610 3 C -0.237 4.237 4 H 0.064 0.936 5 C -0.054 4.054 6 N -0.940 5.940 7 Si 0.959 3.041 8 H -0.285 1.285 9 H -0.299 1.299 10 H -0.276 1.276 11 C 0.118 3.882 12 C 0.079 3.921 13 H 0.070 0.930 14 O -0.557 6.557 15 C 0.092 3.908 16 N -0.604 5.604 17 C 0.061 3.939 18 C 0.510 3.490 19 O -0.568 6.568 20 C -0.023 4.023 21 H 0.149 0.851 22 C -0.106 4.106 23 C -0.106 4.106 24 C -0.039 4.039 25 C -0.022 4.022 26 N -0.292 5.292 27 N -0.115 5.115 28 N -0.364 5.364 29 H 0.456 0.544 30 C 0.011 3.989 31 H -0.001 1.001 32 H 0.015 0.985 33 H 0.035 0.965 34 H 0.243 0.757 35 H 0.047 0.953 36 H 0.076 0.924 37 H 0.363 0.637 38 H 0.118 0.882 39 H 0.071 0.929 40 H 0.088 0.912 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.048 0.952 44 H 0.099 0.901 45 H 0.093 0.907 46 H 0.102 0.898 47 H 0.101 0.899 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.988 -21.553 9.693 23.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.333 5.333 3 C -0.368 4.368 4 H 0.082 0.918 5 C -0.248 4.248 6 N -0.588 5.588 7 Si 0.789 3.211 8 H -0.211 1.211 9 H -0.225 1.225 10 H -0.202 1.202 11 C -0.009 4.009 12 C 0.016 3.984 13 H 0.088 0.912 14 O -0.361 6.361 15 C -0.032 4.032 16 N -0.335 5.335 17 C -0.080 4.080 18 C 0.298 3.702 19 O -0.446 6.446 20 C -0.046 4.046 21 H 0.167 0.833 22 C -0.144 4.144 23 C -0.143 4.143 24 C -0.078 4.078 25 C -0.162 4.162 26 N -0.157 5.157 27 N -0.093 5.093 28 N -0.083 5.083 29 H 0.303 0.697 30 C -0.126 4.126 31 H 0.017 0.983 32 H 0.034 0.966 33 H 0.053 0.947 34 H 0.052 0.948 35 H 0.066 0.934 36 H 0.094 0.906 37 H 0.209 0.791 38 H 0.136 0.864 39 H 0.090 0.910 40 H 0.106 0.894 41 H 0.104 0.896 42 H 0.102 0.898 43 H 0.067 0.933 44 H 0.117 0.883 45 H 0.111 0.889 46 H 0.121 0.879 47 H 0.119 0.881 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 4.341 -21.394 9.891 23.966 hybrid contribution -0.266 1.574 -1.263 2.036 sum 4.075 -19.819 8.628 21.997 Atomic orbital electron populations 1.20546 0.82632 0.96010 0.97407 1.44071 1.02082 1.01566 1.85573 1.19331 0.97191 0.86383 1.33864 0.91774 1.25621 0.98422 1.01322 0.99458 1.70215 1.18174 1.26712 1.43729 0.85396 0.78150 0.80752 0.76807 1.21146 1.22546 1.20168 1.21687 0.96512 0.87887 0.94770 1.22978 0.93506 0.86736 0.95132 0.91189 1.86589 1.32572 1.60714 1.56200 1.22253 1.01618 0.96450 0.82865 1.47869 1.22566 1.49280 1.13805 1.22224 0.91173 0.94227 1.00382 1.20753 0.81279 0.81154 0.87062 1.90720 1.46311 1.34804 1.72772 1.20118 0.88424 1.03063 0.93003 0.83345 1.21604 1.02504 0.96721 0.93618 1.21637 0.93070 1.04012 0.95619 1.20192 0.95057 1.00074 0.92467 1.22263 0.89963 1.05075 0.98948 1.74766 1.18745 1.13432 1.08730 1.78480 1.06377 1.21895 1.02569 1.44638 1.06548 1.40662 1.16475 0.69679 1.21561 0.94944 1.03984 0.92117 0.98286 0.96601 0.94686 0.94803 0.93447 0.90583 0.79123 0.86427 0.91006 0.89407 0.89608 0.89815 0.93334 0.88250 0.88884 0.87931 0.88068 0.90276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.67 9.00 127.77 1.15 9.82 16 2 N -0.61 -29.79 2.88 -726.96 -2.09 -31.88 16 3 C -0.24 -13.10 9.03 84.03 0.76 -12.34 16 4 H 0.06 3.49 7.84 -2.91 -0.02 3.47 16 5 C -0.05 -3.12 5.16 84.86 0.44 -2.68 16 6 N -0.94 -56.96 10.49 21.65 0.23 -56.74 16 7 Si 0.96 47.12 29.57 68.60 2.03 49.15 16 8 H -0.28 -13.58 7.11 99.48 0.71 -12.88 16 9 H -0.30 -14.88 7.11 99.48 0.71 -14.18 16 10 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 11 C 0.12 4.30 5.43 86.38 0.47 4.76 16 12 C 0.08 2.64 3.48 30.59 0.11 2.74 16 13 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 14 O -0.56 -23.77 11.34 -136.84 -1.55 -25.32 16 15 C 0.09 2.07 5.08 86.38 0.44 2.51 16 16 N -0.60 -11.61 2.86 -846.74 -2.42 -14.03 16 17 C 0.06 0.61 9.58 127.77 1.22 1.83 16 18 C 0.51 11.95 6.27 87.66 0.55 12.50 16 19 O -0.57 -18.91 14.82 9.10 0.13 -18.78 16 20 C -0.02 -0.38 2.10 -12.19 -0.03 -0.40 16 21 H 0.15 1.24 6.50 -2.39 -0.02 1.22 16 22 C -0.11 -1.72 5.18 30.78 0.16 -1.56 16 23 C -0.11 -1.15 5.89 30.77 0.18 -0.97 16 24 C -0.04 -0.64 6.31 29.95 0.19 -0.45 16 25 C -0.02 -0.51 7.11 41.75 0.30 -0.22 16 26 N -0.29 -8.54 12.40 -48.99 -0.61 -9.14 16 27 N -0.11 -3.22 13.40 37.02 0.50 -2.73 16 28 N -0.36 -8.07 6.92 -48.27 -0.33 -8.41 16 29 H 0.46 7.58 8.96 -219.68 -1.97 5.61 16 30 C 0.01 0.24 6.01 41.50 0.25 0.49 16 31 H 0.00 -0.06 7.38 -2.39 -0.02 -0.08 16 32 H 0.02 0.83 7.18 -2.39 -0.02 0.81 16 33 H 0.03 1.37 7.84 -2.38 -0.02 1.35 16 34 H 0.24 14.45 8.31 -92.71 -0.77 13.68 16 35 H 0.05 1.70 8.03 -2.39 -0.02 1.69 16 36 H 0.08 2.25 7.86 -2.39 -0.02 2.23 16 37 H 0.36 15.25 8.63 -74.06 -0.64 14.61 16 38 H 0.12 1.80 8.07 -2.38 -0.02 1.78 16 39 H 0.07 1.80 7.49 -2.39 -0.02 1.78 16 40 H 0.09 0.37 8.14 -2.38 -0.02 0.35 16 41 H 0.09 0.62 6.45 -2.38 -0.02 0.61 16 42 H 0.08 0.83 8.03 -2.39 -0.02 0.81 16 43 H 0.05 1.15 8.08 -2.39 -0.02 1.13 16 44 H 0.10 1.32 7.69 -2.39 -0.02 1.30 16 45 H 0.09 0.64 8.12 -2.39 -0.02 0.62 16 46 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 47 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 48 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -82.91 384.79 0.45 -82.45 By element: Atomic # 1 Polarization: 21.00 SS G_CDS: -1.61 Total: 19.39 kcal Atomic # 6 Polarization: 9.86 SS G_CDS: 6.18 Total: 16.04 kcal Atomic # 7 Polarization: -118.20 SS G_CDS: -4.73 Total: -122.93 kcal Atomic # 8 Polarization: -42.68 SS G_CDS: -1.42 Total: -44.10 kcal Atomic # 14 Polarization: 47.12 SS G_CDS: 2.03 Total: 49.15 kcal Total: -82.91 0.45 -82.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284509673.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.580 kcal (2) G-P(sol) polarization free energy of solvation -82.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds