Wall clock time and date at job start Tue Mar 31 2020 21:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34780 * 120.00450 * 2 1 4 4 O 1.21279 * 120.00019 * 180.02562 * 3 2 1 5 5 C 1.50701 * 119.99677 * 0.02562 * 3 2 1 6 6 C 1.53000 * 109.47150 * 180.02562 * 5 3 2 7 7 N 1.46494 * 109.46949 * 179.97438 * 6 5 3 8 8 N 1.40173 * 126.34943 * 269.67830 * 7 6 5 9 9 C 1.29397 * 108.14046 * 179.88375 * 8 7 6 10 10 N 1.37357 * 108.83034 * 0.38904 * 9 8 7 11 11 C 1.46497 * 125.83633 * 179.77701 * 10 9 8 12 12 C 1.34815 * 108.33246 * 359.74874 * 10 9 8 13 13 O 1.21822 * 126.29903 * 179.97438 * 12 10 9 14 14 C 1.46503 * 119.99683 * 179.97438 * 2 1 3 15 15 C 1.53071 * 109.45178 * 299.78776 * 14 2 1 16 16 C 1.53201 * 109.29371 * 181.24494 * 15 14 2 17 17 N 1.46928 * 108.89275 * 305.57634 * 16 15 14 18 18 C 1.36934 * 120.63265 * 233.51651 * 17 16 15 19 19 H 1.07997 * 119.99862 * 151.82898 * 18 17 16 20 20 C 1.38806 * 120.00015 * 331.83027 * 18 17 16 21 21 N 1.31624 * 120.00191 * 343.08772 * 20 18 17 22 22 Si 1.86800 * 120.00146 * 163.08448 * 20 18 17 23 23 H 1.48503 * 109.47142 * 60.00161 * 22 20 18 24 24 H 1.48498 * 109.47084 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47267 * 300.00095 * 22 20 18 26 26 C 1.46932 * 118.73342 * 53.53882 * 17 16 15 27 27 C 1.53045 * 109.45960 * 60.00057 * 14 2 1 28 28 H 1.08998 * 109.46703 * 270.00337 * 1 2 3 29 29 H 1.08999 * 109.46510 * 30.00036 * 1 2 3 30 30 H 1.08999 * 109.47276 * 150.00122 * 1 2 3 31 31 H 1.09004 * 109.46772 * 300.00036 * 5 3 2 32 32 H 1.08998 * 109.47163 * 59.99737 * 5 3 2 33 33 H 1.09006 * 109.46367 * 299.99683 * 6 5 3 34 34 H 1.09001 * 109.47043 * 59.99544 * 6 5 3 35 35 H 1.08000 * 125.58780 * 180.14187 * 9 8 7 36 36 H 1.09008 * 109.47019 * 269.97693 * 11 10 9 37 37 H 1.09002 * 109.46875 * 29.96811 * 11 10 9 38 38 H 1.08991 * 109.47986 * 149.96945 * 11 10 9 39 39 H 1.09001 * 109.45637 * 179.97438 * 14 2 1 40 40 H 1.09002 * 109.39343 * 61.36736 * 15 14 2 41 41 H 1.09003 * 109.62467 * 301.25963 * 15 14 2 42 42 H 1.09000 * 109.58250 * 185.72113 * 16 15 14 43 43 H 1.08995 * 109.58477 * 65.43833 * 16 15 14 44 44 H 0.96995 * 120.00379 * 180.02562 * 21 20 18 45 45 H 1.08996 * 109.59017 * 66.18099 * 26 17 16 46 46 H 1.09009 * 109.58200 * 186.46074 * 26 17 16 47 47 H 1.09002 * 109.49555 * 58.66185 * 27 14 2 48 48 H 1.08992 * 109.52043 * 298.58186 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3518 1.1671 -0.0005 5 6 1.3856 2.4723 0.0006 6 6 2.3798 3.6352 -0.0002 7 7 1.6473 4.9039 -0.0002 8 7 1.2369 5.6262 -1.1292 9 6 0.6184 6.6884 -0.7249 10 7 0.6110 6.7015 0.6485 11 6 0.0128 7.7381 1.4933 12 6 1.2479 5.5969 1.0865 13 8 1.4297 5.2826 2.2493 14 6 2.1975 -1.2688 0.0006 15 6 1.8313 -2.0682 1.2536 16 6 2.6225 -3.3800 1.2662 17 7 2.3848 -4.0911 0.0026 18 6 1.9518 -5.3902 0.0038 19 1 1.3615 -5.7633 -0.8200 20 6 2.2714 -6.2273 1.0638 21 7 3.2434 -5.9019 1.8895 22 14 1.3220 -7.8158 1.3187 23 1 1.4730 -8.6803 0.1207 24 1 1.8532 -8.5240 2.5109 25 1 -0.1151 -7.5055 1.5273 26 6 2.6212 -3.3819 -1.2623 27 6 1.8275 -2.0716 -1.2488 28 1 -0.3633 0.0001 1.0277 29 1 -0.3632 0.8900 -0.5139 30 1 -0.3634 -0.8900 -0.5138 31 1 0.7585 2.5302 -0.8892 32 1 0.7592 2.5298 0.8908 33 1 3.0071 3.5774 0.8894 34 1 3.0058 3.5774 -0.8906 35 1 0.1830 7.4433 -1.3629 36 1 0.7546 8.5088 1.7030 37 1 -0.8369 8.1832 0.9754 38 1 -0.3246 7.2941 2.4297 39 1 3.2691 -1.0694 0.0000 40 1 0.7636 -2.2873 1.2439 41 1 2.0759 -1.4873 2.1429 42 1 2.2919 -3.9980 2.1010 43 1 3.6859 -3.1644 1.3698 44 1 3.4670 -6.4871 2.6301 45 1 3.6841 -3.1642 -1.3662 46 1 2.2921 -4.0022 -2.0960 47 1 2.0688 -1.4909 -2.1391 48 1 0.7603 -2.2927 -1.2368 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316933962.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:11:11 Heat of formation + Delta-G solvation = 40.317244 kcal Electronic energy + Delta-G solvation = -29447.251804 eV Core-core repulsion = 25347.527630 eV Total energy + Delta-G solvation = -4099.724175 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.73228 -40.03034 -37.57889 -37.49726 -35.94941 -35.10661 -33.18284 -32.38056 -30.53789 -29.96373 -29.41628 -27.84035 -26.87065 -25.59665 -24.45140 -22.76380 -22.18003 -21.88950 -21.27263 -19.30349 -18.79227 -18.06740 -17.15017 -16.91467 -16.69689 -16.39824 -15.97984 -15.76124 -15.57706 -14.86633 -14.68701 -14.24087 -13.90133 -13.83957 -13.59281 -13.39697 -13.22673 -13.01161 -12.95450 -12.75941 -12.60708 -12.53720 -12.40035 -12.22180 -12.06850 -11.48538 -11.45414 -11.10227 -10.80476 -10.71372 -10.54459 -10.46040 -10.35721 -10.20922 -10.07977 -9.79060 -9.67492 -9.48546 -8.88489 -8.52701 -8.30450 -6.67555 -5.78015 -3.20976 1.41338 1.58856 2.36127 2.69730 2.73048 3.19216 3.38908 3.44714 3.45499 4.06105 4.31917 4.49982 4.53963 4.58445 4.65288 4.73731 4.88919 5.02543 5.08437 5.24842 5.32775 5.36162 5.40477 5.43954 5.52467 5.52982 5.62532 5.69110 5.73757 5.87441 5.89575 6.08628 6.18184 6.25437 6.33639 6.49907 6.59435 6.63705 6.78202 6.90140 6.96861 7.27722 7.35848 7.53712 7.67784 7.73377 7.79809 8.26289 8.45757 9.21589 9.84879 10.42052 11.30681 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.030082 B = 0.002026 C = 0.001996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.563456 B =13818.441539 C =14025.046495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.606 5.606 3 C 0.518 3.482 4 O -0.544 6.544 5 C -0.157 4.157 6 C 0.176 3.824 7 N -0.450 5.450 8 N -0.279 5.279 9 C 0.251 3.749 10 N -0.564 5.564 11 C 0.099 3.901 12 C 0.641 3.359 13 O -0.550 6.550 14 C 0.144 3.856 15 C -0.145 4.145 16 C 0.174 3.826 17 N -0.592 5.592 18 C -0.254 4.254 19 H 0.065 0.935 20 C 0.002 3.998 21 N -0.902 5.902 22 Si 0.903 3.097 23 H -0.283 1.283 24 H -0.291 1.291 25 H -0.284 1.284 26 C 0.148 3.852 27 C -0.138 4.138 28 H 0.056 0.944 29 H 0.065 0.935 30 H 0.078 0.922 31 H 0.099 0.901 32 H 0.096 0.904 33 H 0.105 0.895 34 H 0.105 0.895 35 H 0.231 0.769 36 H 0.073 0.927 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.096 0.904 40 H 0.056 0.944 41 H 0.051 0.949 42 H 0.090 0.910 43 H 0.021 0.979 44 H 0.255 0.745 45 H 0.020 0.980 46 H 0.057 0.943 47 H 0.052 0.948 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.063 28.331 -5.454 30.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.338 5.338 3 C 0.305 3.695 4 O -0.422 6.422 5 C -0.198 4.198 6 C 0.056 3.944 7 N -0.271 5.271 8 N -0.100 5.100 9 C -0.049 4.049 10 N -0.293 5.293 11 C -0.043 4.043 12 C 0.341 3.659 13 O -0.423 6.423 14 C 0.043 3.957 15 C -0.185 4.185 16 C 0.047 3.953 17 N -0.315 5.315 18 C -0.383 4.383 19 H 0.083 0.917 20 C -0.197 4.197 21 N -0.546 5.546 22 Si 0.733 3.267 23 H -0.209 1.209 24 H -0.216 1.216 25 H -0.211 1.211 26 C 0.021 3.979 27 C -0.178 4.178 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.097 0.903 31 H 0.118 0.882 32 H 0.115 0.885 33 H 0.123 0.877 34 H 0.123 0.877 35 H 0.247 0.753 36 H 0.091 0.909 37 H 0.107 0.893 38 H 0.106 0.894 39 H 0.114 0.886 40 H 0.075 0.925 41 H 0.070 0.930 42 H 0.108 0.892 43 H 0.039 0.961 44 H 0.065 0.935 45 H 0.038 0.962 46 H 0.075 0.925 47 H 0.071 0.929 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.862 27.370 -5.261 29.246 hybrid contribution -1.006 -0.303 0.763 1.298 sum -9.867 27.067 -4.498 29.158 Atomic orbital electron populations 1.21771 0.80066 1.03017 1.01900 1.48145 1.06978 1.06397 1.72264 1.20218 0.87871 0.85017 0.76398 1.90712 1.13737 1.87346 1.50381 1.22058 1.00006 0.92703 1.05064 1.21230 0.91667 0.75515 1.06037 1.49069 1.53567 1.21777 1.02688 1.77022 1.16771 1.05140 1.11067 1.25942 0.98092 0.97867 0.82964 1.45968 1.52845 1.23056 1.07460 1.21823 0.98398 0.88888 0.95237 1.16832 0.81764 0.81488 0.85857 1.91120 1.63007 1.73010 1.15197 1.21224 0.97343 0.80821 0.96338 1.22557 1.01584 0.98947 0.95404 1.20755 0.95356 0.88664 0.90507 1.44080 1.77815 1.10180 0.99406 1.19122 1.25961 0.86578 1.06678 0.91713 1.25068 0.96902 0.97706 0.99981 1.70020 1.28077 1.38333 1.18178 0.86363 0.79718 0.83275 0.77353 1.20877 1.21644 1.21069 1.20864 0.95842 0.90902 0.90335 1.22366 1.01331 0.98087 0.95991 0.92572 0.91646 0.90329 0.88249 0.88544 0.87716 0.87716 0.75336 0.90868 0.89305 0.89367 0.88605 0.92489 0.93048 0.89189 0.96126 0.93520 0.96194 0.92458 0.92915 0.92086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.86 9.33 59.85 0.56 1.42 16 2 N -0.61 -9.00 2.76 -173.86 -0.48 -9.48 16 3 C 0.52 7.74 7.67 -10.98 -0.08 7.66 16 4 O -0.54 -10.03 15.31 5.56 0.09 -9.95 16 5 C -0.16 -1.77 4.58 -27.88 -0.13 -1.90 16 6 C 0.18 2.06 5.68 -4.05 -0.02 2.04 16 7 N -0.45 -5.05 3.62 -65.12 -0.24 -5.29 16 8 N -0.28 -2.52 12.53 29.87 0.37 -2.14 16 9 C 0.25 1.32 12.66 -89.12 -1.13 0.19 16 10 N -0.56 -4.08 3.14 -130.11 -0.41 -4.49 16 11 C 0.10 0.33 11.05 59.85 0.66 0.99 16 12 C 0.64 7.66 8.60 -86.74 -0.75 6.91 16 13 O -0.55 -8.60 17.72 5.08 0.09 -8.51 16 14 C 0.14 2.60 2.48 -67.87 -0.17 2.43 16 15 C -0.14 -2.84 5.36 -26.59 -0.14 -2.98 16 16 C 0.17 4.21 5.30 -3.71 -0.02 4.19 16 17 N -0.59 -14.87 3.00 -172.31 -0.52 -15.38 16 18 C -0.25 -6.94 9.58 -15.06 -0.14 -7.09 16 19 H 0.07 1.73 7.88 -52.49 -0.41 1.31 16 20 C 0.00 0.06 4.92 -17.43 -0.09 -0.03 16 21 N -0.90 -26.37 11.20 55.49 0.62 -25.75 16 22 Si 0.90 21.69 29.59 -169.99 -5.03 16.66 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 25 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 26 C 0.15 3.13 6.52 -3.71 -0.02 3.10 16 27 C -0.14 -2.42 5.31 -26.61 -0.14 -2.56 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.57 6.44 -51.93 -0.33 0.24 16 30 H 0.08 0.91 6.46 -51.93 -0.34 0.57 16 31 H 0.10 0.96 7.40 -51.93 -0.38 0.57 16 32 H 0.10 1.07 8.11 -51.93 -0.42 0.65 16 33 H 0.10 1.36 8.07 -51.93 -0.42 0.95 16 34 H 0.10 1.19 8.10 -51.93 -0.42 0.77 16 35 H 0.23 -0.09 8.06 -52.49 -0.42 -0.51 16 36 H 0.07 0.18 8.14 -51.92 -0.42 -0.24 16 37 H 0.09 -0.01 8.14 -51.93 -0.42 -0.43 16 38 H 0.09 0.41 8.08 -51.93 -0.42 -0.01 16 39 H 0.10 1.96 6.90 -51.93 -0.36 1.60 16 40 H 0.06 1.09 7.72 -51.93 -0.40 0.69 16 41 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.09 2.42 6.06 -51.93 -0.31 2.11 16 43 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 45 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.06 1.17 7.93 -51.92 -0.41 0.76 16 47 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 48 H 0.06 1.05 6.72 -51.93 -0.35 0.70 16 LS Contribution 388.43 15.07 5.85 5.85 Total: -1.00 -36.71 388.43 -8.76 -45.47 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -7.50 Total: -1.37 kcal Atomic # 6 Polarization: 16.00 SS G_CDS: -1.62 Total: 14.38 kcal Atomic # 7 Polarization: -61.89 SS G_CDS: -0.65 Total: -62.53 kcal Atomic # 8 Polarization: -18.64 SS G_CDS: 0.18 Total: -18.46 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.03 Total: 16.66 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -36.71 -8.76 -45.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316933962.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.790 kcal (2) G-P(sol) polarization free energy of solvation -36.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds