Wall clock time and date at job start Tue Mar 31 2020 21:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34780 * 120.00450 * 2 1 4 4 O 1.21279 * 120.00019 * 180.02562 * 3 2 1 5 5 C 1.50701 * 119.99677 * 0.02562 * 3 2 1 6 6 C 1.53000 * 109.47150 * 180.02562 * 5 3 2 7 7 N 1.46494 * 109.46949 * 179.97438 * 6 5 3 8 8 N 1.40173 * 126.34943 * 269.67830 * 7 6 5 9 9 C 1.29397 * 108.14046 * 179.88375 * 8 7 6 10 10 N 1.37357 * 108.83034 * 0.38904 * 9 8 7 11 11 C 1.46497 * 125.83633 * 179.77701 * 10 9 8 12 12 C 1.34815 * 108.33246 * 359.74874 * 10 9 8 13 13 O 1.21822 * 126.29903 * 179.97438 * 12 10 9 14 14 C 1.46503 * 119.99683 * 179.97438 * 2 1 3 15 15 C 1.53071 * 109.45178 * 299.78776 * 14 2 1 16 16 C 1.53201 * 109.29371 * 181.24494 * 15 14 2 17 17 N 1.46928 * 108.89275 * 305.57634 * 16 15 14 18 18 C 1.36934 * 120.63265 * 233.51651 * 17 16 15 19 19 H 1.07997 * 119.99862 * 151.82898 * 18 17 16 20 20 C 1.38806 * 120.00015 * 331.83027 * 18 17 16 21 21 N 1.31624 * 120.00191 * 343.08772 * 20 18 17 22 22 Si 1.86800 * 120.00146 * 163.08448 * 20 18 17 23 23 H 1.48503 * 109.47142 * 60.00161 * 22 20 18 24 24 H 1.48498 * 109.47084 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47267 * 300.00095 * 22 20 18 26 26 C 1.46932 * 118.73342 * 53.53882 * 17 16 15 27 27 C 1.53045 * 109.45960 * 60.00057 * 14 2 1 28 28 H 1.08998 * 109.46703 * 270.00337 * 1 2 3 29 29 H 1.08999 * 109.46510 * 30.00036 * 1 2 3 30 30 H 1.08999 * 109.47276 * 150.00122 * 1 2 3 31 31 H 1.09004 * 109.46772 * 300.00036 * 5 3 2 32 32 H 1.08998 * 109.47163 * 59.99737 * 5 3 2 33 33 H 1.09006 * 109.46367 * 299.99683 * 6 5 3 34 34 H 1.09001 * 109.47043 * 59.99544 * 6 5 3 35 35 H 1.08000 * 125.58780 * 180.14187 * 9 8 7 36 36 H 1.09008 * 109.47019 * 269.97693 * 11 10 9 37 37 H 1.09002 * 109.46875 * 29.96811 * 11 10 9 38 38 H 1.08991 * 109.47986 * 149.96945 * 11 10 9 39 39 H 1.09001 * 109.45637 * 179.97438 * 14 2 1 40 40 H 1.09002 * 109.39343 * 61.36736 * 15 14 2 41 41 H 1.09003 * 109.62467 * 301.25963 * 15 14 2 42 42 H 1.09000 * 109.58250 * 185.72113 * 16 15 14 43 43 H 1.08995 * 109.58477 * 65.43833 * 16 15 14 44 44 H 0.96995 * 120.00379 * 180.02562 * 21 20 18 45 45 H 1.08996 * 109.59017 * 66.18099 * 26 17 16 46 46 H 1.09009 * 109.58200 * 186.46074 * 26 17 16 47 47 H 1.09002 * 109.49555 * 58.66185 * 27 14 2 48 48 H 1.08992 * 109.52043 * 298.58186 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3518 1.1671 -0.0005 5 6 1.3856 2.4723 0.0006 6 6 2.3798 3.6352 -0.0002 7 7 1.6473 4.9039 -0.0002 8 7 1.2369 5.6262 -1.1292 9 6 0.6184 6.6884 -0.7249 10 7 0.6110 6.7015 0.6485 11 6 0.0128 7.7381 1.4933 12 6 1.2479 5.5969 1.0865 13 8 1.4297 5.2826 2.2493 14 6 2.1975 -1.2688 0.0006 15 6 1.8313 -2.0682 1.2536 16 6 2.6225 -3.3800 1.2662 17 7 2.3848 -4.0911 0.0026 18 6 1.9518 -5.3902 0.0038 19 1 1.3615 -5.7633 -0.8200 20 6 2.2714 -6.2273 1.0638 21 7 3.2434 -5.9019 1.8895 22 14 1.3220 -7.8158 1.3187 23 1 1.4730 -8.6803 0.1207 24 1 1.8532 -8.5240 2.5109 25 1 -0.1151 -7.5055 1.5273 26 6 2.6212 -3.3819 -1.2623 27 6 1.8275 -2.0716 -1.2488 28 1 -0.3633 0.0001 1.0277 29 1 -0.3632 0.8900 -0.5139 30 1 -0.3634 -0.8900 -0.5138 31 1 0.7585 2.5302 -0.8892 32 1 0.7592 2.5298 0.8908 33 1 3.0071 3.5774 0.8894 34 1 3.0058 3.5774 -0.8906 35 1 0.1830 7.4433 -1.3629 36 1 0.7546 8.5088 1.7030 37 1 -0.8369 8.1832 0.9754 38 1 -0.3246 7.2941 2.4297 39 1 3.2691 -1.0694 0.0000 40 1 0.7636 -2.2873 1.2439 41 1 2.0759 -1.4873 2.1429 42 1 2.2919 -3.9980 2.1010 43 1 3.6859 -3.1644 1.3698 44 1 3.4670 -6.4871 2.6301 45 1 3.6841 -3.1642 -1.3662 46 1 2.2921 -4.0022 -2.0960 47 1 2.0688 -1.4909 -2.1391 48 1 0.7603 -2.2927 -1.2368 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316933962.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:11:10 Heat of formation + Delta-G solvation = 16.622194 kcal Electronic energy + Delta-G solvation = -29448.279299 eV Core-core repulsion = 25347.527630 eV Total energy + Delta-G solvation = -4100.751669 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -43.40054 -41.29274 -39.12642 -38.42027 -36.77646 -36.52070 -34.43410 -33.70996 -32.06215 -31.50558 -30.68341 -28.36170 -27.96985 -27.05358 -25.69862 -23.90791 -23.75532 -23.10302 -22.11278 -20.85892 -20.10765 -18.89808 -18.70285 -17.85991 -17.79283 -17.22962 -17.18435 -16.74990 -16.67844 -16.47331 -15.72495 -15.41584 -15.34349 -14.98988 -14.92164 -14.74624 -14.36065 -14.13754 -14.07767 -13.90053 -13.81823 -13.49542 -13.36514 -13.19925 -13.01100 -12.99675 -12.86621 -12.58460 -12.55234 -12.40668 -12.12861 -12.02007 -11.89735 -11.49865 -11.38542 -11.34418 -11.11019 -10.82867 -10.56547 -9.66495 -9.63984 -8.72773 -7.88331 -5.34956 0.71721 1.10357 1.47561 1.49968 1.52214 1.55042 1.56997 1.94730 2.29776 2.51155 3.27390 3.42547 3.49540 3.63733 3.70814 3.90007 3.96530 4.04341 4.13138 4.20200 4.29204 4.29566 4.35974 4.44128 4.54291 4.57830 4.63636 4.68399 4.69174 4.70672 4.83201 4.84731 4.92687 4.96027 5.02710 5.05223 5.09669 5.12330 5.27965 5.43213 5.55252 5.62549 5.67434 5.70833 6.36930 6.37970 6.64196 6.93935 7.07885 7.12285 7.82530 8.36044 9.18765 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.030082 B = 0.002026 C = 0.001996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.563456 B =13818.441539 C =14025.046495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.605 5.605 3 C 0.515 3.485 4 O -0.585 6.585 5 C -0.137 4.137 6 C 0.180 3.820 7 N -0.457 5.457 8 N -0.314 5.314 9 C 0.281 3.719 10 N -0.558 5.558 11 C 0.091 3.909 12 C 0.624 3.376 13 O -0.602 6.602 14 C 0.153 3.847 15 C -0.127 4.127 16 C 0.181 3.819 17 N -0.608 5.608 18 C -0.262 4.262 19 H 0.073 0.927 20 C -0.054 4.054 21 N -0.938 5.938 22 Si 0.971 3.029 23 H -0.274 1.274 24 H -0.297 1.297 25 H -0.275 1.275 26 C 0.143 3.857 27 C -0.120 4.120 28 H 0.062 0.938 29 H 0.098 0.902 30 H 0.081 0.919 31 H 0.126 0.874 32 H 0.102 0.898 33 H 0.080 0.920 34 H 0.104 0.896 35 H 0.291 0.709 36 H 0.083 0.917 37 H 0.134 0.866 38 H 0.070 0.930 39 H 0.066 0.934 40 H 0.067 0.933 41 H 0.053 0.947 42 H 0.059 0.941 43 H -0.012 1.012 44 H 0.250 0.750 45 H 0.007 0.993 46 H 0.065 0.935 47 H 0.074 0.926 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.421 30.812 -7.560 34.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.336 5.336 3 C 0.304 3.696 4 O -0.466 6.466 5 C -0.177 4.177 6 C 0.058 3.942 7 N -0.277 5.277 8 N -0.136 5.136 9 C -0.017 4.017 10 N -0.286 5.286 11 C -0.049 4.049 12 C 0.323 3.677 13 O -0.479 6.479 14 C 0.050 3.950 15 C -0.167 4.167 16 C 0.055 3.945 17 N -0.332 5.332 18 C -0.392 4.392 19 H 0.090 0.910 20 C -0.249 4.249 21 N -0.584 5.584 22 Si 0.799 3.201 23 H -0.200 1.200 24 H -0.224 1.224 25 H -0.201 1.201 26 C 0.017 3.983 27 C -0.160 4.160 28 H 0.081 0.919 29 H 0.117 0.883 30 H 0.099 0.901 31 H 0.144 0.856 32 H 0.120 0.880 33 H 0.098 0.902 34 H 0.122 0.878 35 H 0.306 0.694 36 H 0.102 0.898 37 H 0.152 0.848 38 H 0.089 0.911 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.071 0.929 42 H 0.077 0.923 43 H 0.007 0.993 44 H 0.059 0.941 45 H 0.025 0.975 46 H 0.084 0.916 47 H 0.093 0.907 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -12.282 29.915 -7.421 33.178 hybrid contribution 0.053 -0.934 1.364 1.654 sum -12.229 28.981 -6.057 32.033 Atomic orbital electron populations 1.22049 0.77365 1.04835 1.02960 1.48095 1.08494 1.05046 1.71975 1.20842 0.87531 0.86043 0.75232 1.90699 1.15836 1.87946 1.52147 1.21912 0.99427 0.89969 1.06413 1.21002 0.91838 0.76559 1.04836 1.48990 1.53509 1.21689 1.03471 1.77063 1.19446 1.06883 1.10180 1.27178 0.95035 0.97163 0.82281 1.46180 1.51550 1.22116 1.08717 1.22174 1.00063 0.87838 0.94832 1.17169 0.82377 0.82848 0.85348 1.91064 1.65097 1.74535 1.17198 1.20815 0.96231 0.82297 0.95651 1.22280 1.01137 0.96657 0.96650 1.20499 0.94082 0.90326 0.89615 1.44328 1.77967 1.10120 1.00738 1.19509 1.25472 0.87497 1.06706 0.90984 1.25892 0.97848 1.01162 1.00027 1.70199 1.29871 1.39594 1.18772 0.85288 0.78493 0.79349 0.76987 1.19970 1.22362 1.20078 1.21020 0.95828 0.92579 0.88918 1.22151 1.01305 0.96005 0.96521 0.91918 0.88318 0.90053 0.85585 0.88018 0.90190 0.87787 0.69428 0.89847 0.84754 0.91126 0.91610 0.91386 0.92859 0.92268 0.99347 0.94123 0.97529 0.91634 0.90722 0.90671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.36 9.33 127.77 1.19 2.55 16 2 N -0.61 -17.09 2.76 -822.36 -2.27 -19.36 16 3 C 0.51 15.09 7.67 87.66 0.67 15.76 16 4 O -0.59 -22.22 15.31 -3.03 -0.05 -22.27 16 5 C -0.14 -2.88 4.58 29.85 0.14 -2.75 16 6 C 0.18 4.24 5.68 86.38 0.49 4.73 16 7 N -0.46 -9.87 3.62 -478.02 -1.73 -11.60 16 8 N -0.31 -4.86 12.53 -59.42 -0.74 -5.60 16 9 C 0.28 1.80 12.66 179.83 2.28 4.07 16 10 N -0.56 -6.63 3.14 -683.69 -2.15 -8.78 16 11 C 0.09 0.34 11.05 127.77 1.41 1.76 16 12 C 0.62 14.58 8.60 178.99 1.54 16.12 16 13 O -0.60 -19.45 17.72 -4.74 -0.08 -19.54 16 14 C 0.15 5.48 2.48 45.03 0.11 5.59 16 15 C -0.13 -5.04 5.36 30.69 0.16 -4.87 16 16 C 0.18 9.17 5.30 86.37 0.46 9.63 16 17 N -0.61 -31.09 3.00 -699.07 -2.09 -33.19 16 18 C -0.26 -14.42 9.58 84.03 0.81 -13.61 16 19 H 0.07 3.79 7.88 -2.91 -0.02 3.77 16 20 C -0.05 -3.06 4.92 84.86 0.42 -2.64 16 21 N -0.94 -56.89 11.20 21.65 0.24 -56.65 16 22 Si 0.97 45.04 29.59 68.60 2.03 47.07 16 23 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 24 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 25 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 26 C 0.14 6.03 6.52 86.36 0.56 6.60 16 27 C -0.12 -4.04 5.31 30.67 0.16 -3.88 16 28 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.10 1.30 6.44 -2.39 -0.02 1.28 16 30 H 0.08 1.59 6.46 -2.39 -0.02 1.57 16 31 H 0.13 2.01 7.40 -2.38 -0.02 1.99 16 32 H 0.10 2.10 8.11 -2.39 -0.02 2.08 16 33 H 0.08 2.25 8.07 -2.38 -0.02 2.23 16 34 H 0.10 2.41 8.10 -2.39 -0.02 2.39 16 35 H 0.29 -2.14 8.06 -2.91 -0.02 -2.16 16 36 H 0.08 0.18 8.14 -2.38 -0.02 0.16 16 37 H 0.13 -0.70 8.14 -2.39 -0.02 -0.72 16 38 H 0.07 0.56 8.08 -2.39 -0.02 0.54 16 39 H 0.07 2.78 6.90 -2.39 -0.02 2.77 16 40 H 0.07 2.55 7.72 -2.39 -0.02 2.53 16 41 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 42 H 0.06 3.34 6.06 -2.39 -0.01 3.33 16 43 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 44 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 45 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 46 H 0.07 2.63 7.93 -2.38 -0.02 2.61 16 47 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 48 H 0.07 2.36 6.72 -2.39 -0.02 2.34 16 Total: -1.00 -86.03 388.43 4.51 -81.52 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: 0.96 Total: 9.35 kcal Atomic # 6 Polarization: 28.66 SS G_CDS: 10.40 Total: 39.06 kcal Atomic # 7 Polarization: -126.44 SS G_CDS: -8.75 Total: -135.19 kcal Atomic # 8 Polarization: -41.67 SS G_CDS: -0.13 Total: -41.80 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -86.03 4.51 -81.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316933962.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.137 kcal (2) G-P(sol) polarization free energy of solvation -86.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds