Wall clock time and date at job start Tue Mar 31 2020 21:10:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.37355 * 125.83186 * 2 1 4 4 N 1.29406 * 108.82813 * 179.77681 * 3 2 1 5 5 N 1.40174 * 108.14018 * 0.38991 * 4 3 2 6 6 C 1.46499 * 126.34874 * 179.87835 * 5 4 3 7 7 C 1.53000 * 109.46840 * 269.68250 * 6 5 4 8 8 C 1.50703 * 109.46912 * 180.02562 * 7 6 5 9 9 O 1.21278 * 119.99985 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00161 * 180.02562 * 8 7 6 11 11 C 1.46496 * 120.00271 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.46916 * 274.99861 * 11 10 8 13 13 C 1.53003 * 109.47007 * 299.99560 * 12 11 10 14 14 C 1.53003 * 109.47178 * 300.00465 * 13 12 11 15 15 N 1.46501 * 109.46754 * 179.97438 * 14 13 12 16 16 C 1.36945 * 120.00025 * 85.00064 * 15 14 13 17 17 H 1.08001 * 119.99435 * 359.97438 * 16 15 14 18 18 C 1.38805 * 120.00010 * 179.97438 * 16 15 14 19 19 N 1.31621 * 120.00224 * 179.97438 * 18 16 15 20 20 Si 1.86797 * 120.00213 * 359.97438 * 18 16 15 21 21 H 1.48502 * 109.47302 * 89.99832 * 20 18 16 22 22 H 1.48502 * 109.47208 * 210.00258 * 20 18 16 23 23 H 1.48504 * 109.47311 * 329.99979 * 20 18 16 24 24 C 1.52995 * 109.47075 * 59.99932 * 14 13 12 25 25 C 1.52997 * 109.47387 * 154.99671 * 11 10 8 26 26 C 1.34820 * 125.83042 * 180.02562 * 2 1 3 27 27 O 1.21815 * 126.30194 * 359.97195 * 26 2 1 28 28 H 1.08998 * 109.46928 * 269.96961 * 1 2 3 29 29 H 1.09003 * 109.47291 * 29.96604 * 1 2 3 30 30 H 1.09000 * 109.47380 * 149.97554 * 1 2 3 31 31 H 1.07997 * 125.58598 * 0.02948 * 3 2 1 32 32 H 1.09001 * 109.46813 * 149.68524 * 6 5 4 33 33 H 1.08992 * 109.47397 * 29.68585 * 6 5 4 34 34 H 1.09002 * 109.47398 * 300.00326 * 7 6 5 35 35 H 1.09001 * 109.47194 * 60.00507 * 7 6 5 36 36 H 0.97005 * 119.99463 * 359.97438 * 10 8 7 37 37 H 1.09005 * 109.47129 * 34.99449 * 11 10 8 38 38 H 1.08991 * 109.47341 * 59.99644 * 12 11 10 39 39 H 1.09000 * 109.46953 * 179.97438 * 12 11 10 40 40 H 1.08999 * 109.47062 * 180.02562 * 13 12 11 41 41 H 1.09000 * 109.46949 * 60.00383 * 13 12 11 42 42 H 1.09004 * 109.46709 * 299.99510 * 14 13 12 43 43 H 0.96999 * 120.00579 * 264.99783 * 15 14 13 44 44 H 0.96999 * 120.00581 * 179.97438 * 19 18 16 45 45 H 1.09007 * 109.46800 * 179.97438 * 24 14 13 46 46 H 1.09000 * 109.47243 * 59.99964 * 24 14 13 47 47 H 1.09000 * 109.47324 * 179.97438 * 25 11 10 48 48 H 1.08999 * 109.47176 * 299.99963 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2691 1.1136 0.0000 4 7 3.5066 0.7352 0.0048 5 7 3.5344 -0.6663 -0.0010 6 6 4.7313 -1.5110 -0.0009 7 6 5.1477 -1.8055 -1.4434 8 6 6.3786 -2.6750 -1.4433 9 8 6.8743 -3.0242 -0.3930 10 7 6.9293 -3.0636 -2.6105 11 6 8.1255 -3.9093 -2.6105 12 6 9.3714 -3.0302 -2.4841 13 6 9.4329 -2.0599 -3.6655 14 6 9.4977 -2.8518 -4.9731 15 7 9.5560 -1.9226 -6.1042 16 6 10.7600 -1.4100 -6.5080 17 1 11.6665 -1.6904 -5.9922 18 6 10.8152 -0.5300 -7.5800 19 7 11.9723 -0.0369 -7.9678 20 14 9.2474 -0.0456 -8.4725 21 1 8.6660 1.1616 -7.8321 22 1 9.5582 0.2494 -9.8944 23 1 8.2715 -1.1626 -8.4006 24 6 8.2518 -3.7307 -5.0993 25 6 8.1904 -4.7011 -3.9180 26 6 2.2542 -1.0931 -0.0005 27 8 1.8805 -2.2525 -0.0005 28 1 -0.3633 -0.0005 1.0277 29 1 -0.3634 0.8903 -0.5133 30 1 -0.3634 -0.8897 -0.5142 31 1 1.9249 2.1373 0.0005 32 1 4.5150 -2.4475 0.5132 33 1 5.5414 -0.9933 0.5126 34 1 4.3376 -2.3233 -1.9570 35 1 5.3640 -0.8690 -1.9576 36 1 6.5330 -2.7839 -3.4506 37 1 8.0817 -4.6006 -1.7688 38 1 9.3252 -2.4661 -1.5527 39 1 10.2615 -3.6595 -2.4836 40 1 10.3207 -1.4340 -3.5757 41 1 8.5428 -1.4307 -3.6655 42 1 10.3879 -3.4809 -4.9730 43 1 8.7418 -1.6704 -6.5673 44 1 12.0110 0.5777 -8.7172 45 1 8.2979 -4.2945 -6.0311 46 1 7.3618 -3.1015 -5.0993 47 1 9.0807 -5.3299 -3.9181 48 1 7.3028 -5.3273 -4.0080 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317218554.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:53 Heat of formation + Delta-G solvation = 14.748684 kcal Electronic energy + Delta-G solvation = -29222.109080 eV Core-core repulsion = 25121.276170 eV Total energy + Delta-G solvation = -4100.832911 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.75811 -40.23911 -38.19770 -37.57159 -36.00816 -34.81381 -33.19918 -32.70920 -31.12646 -30.52869 -30.10631 -28.19779 -27.69249 -25.11715 -23.41173 -22.75284 -22.33634 -21.57253 -20.90934 -20.70592 -19.05371 -18.14915 -17.58458 -17.30569 -16.95542 -16.46406 -15.97327 -15.68691 -15.54961 -15.28518 -14.94239 -14.45037 -14.29856 -14.00975 -13.85073 -13.58635 -13.24742 -13.15834 -13.03347 -12.91217 -12.63144 -12.61537 -12.30502 -12.23925 -11.95721 -11.84092 -11.56088 -11.27262 -10.98021 -10.91859 -10.58744 -10.51579 -10.48194 -10.25246 -10.07108 -9.91627 -9.78659 -9.58600 -9.00942 -8.92276 -8.86818 -7.27203 -5.77635 -3.13038 1.38258 1.57947 2.31893 2.56384 2.70451 3.21241 3.34835 3.37230 3.43239 4.03890 4.32849 4.48892 4.54865 4.57484 4.69720 4.72024 4.85127 4.89123 4.97529 5.00632 5.01356 5.16345 5.33258 5.43892 5.47092 5.50136 5.54440 5.57434 5.62995 5.78239 5.81725 5.83964 5.92071 5.96918 6.15360 6.15784 6.25418 6.37236 6.40809 6.52892 6.67769 6.88526 7.02831 7.25218 7.45772 7.69158 7.99245 8.15252 8.41583 9.20172 9.92750 10.12452 11.40850 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.012496 B = 0.002469 C = 0.002205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2240.205007 B =11337.636475 C =12693.898183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.564 5.564 3 C 0.252 3.748 4 N -0.277 5.277 5 N -0.451 5.451 6 C 0.178 3.822 7 C -0.162 4.162 8 C 0.523 3.477 9 O -0.545 6.545 10 N -0.716 5.716 11 C 0.147 3.853 12 C -0.128 4.128 13 C -0.132 4.132 14 C 0.182 3.818 15 N -0.750 5.750 16 C -0.241 4.241 17 H 0.090 0.910 18 C 0.003 3.997 19 N -0.935 5.935 20 Si 0.885 3.115 21 H -0.285 1.285 22 H -0.292 1.292 23 H -0.278 1.278 24 C -0.128 4.128 25 C -0.122 4.122 26 C 0.642 3.358 27 O -0.553 6.553 28 H 0.073 0.927 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.231 0.769 32 H 0.104 0.896 33 H 0.105 0.895 34 H 0.097 0.903 35 H 0.103 0.897 36 H 0.401 0.599 37 H 0.085 0.915 38 H 0.061 0.939 39 H 0.069 0.931 40 H 0.065 0.935 41 H 0.051 0.949 42 H 0.056 0.944 43 H 0.359 0.641 44 H 0.259 0.741 45 H 0.067 0.933 46 H 0.053 0.947 47 H 0.080 0.920 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.699 -0.811 16.514 28.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.293 5.293 3 C -0.047 4.047 4 N -0.098 5.098 5 N -0.272 5.272 6 C 0.057 3.943 7 C -0.204 4.204 8 C 0.308 3.692 9 O -0.423 6.423 10 N -0.368 5.368 11 C 0.043 3.957 12 C -0.167 4.167 13 C -0.172 4.172 14 C 0.073 3.927 15 N -0.391 5.391 16 C -0.371 4.371 17 H 0.108 0.892 18 C -0.193 4.193 19 N -0.583 5.583 20 Si 0.715 3.285 21 H -0.212 1.212 22 H -0.218 1.218 23 H -0.204 1.204 24 C -0.167 4.167 25 C -0.160 4.160 26 C 0.341 3.659 27 O -0.427 6.427 28 H 0.091 0.909 29 H 0.108 0.892 30 H 0.106 0.894 31 H 0.247 0.753 32 H 0.122 0.878 33 H 0.123 0.877 34 H 0.115 0.885 35 H 0.121 0.879 36 H 0.237 0.763 37 H 0.103 0.897 38 H 0.079 0.921 39 H 0.088 0.912 40 H 0.084 0.916 41 H 0.070 0.930 42 H 0.074 0.926 43 H 0.192 0.808 44 H 0.069 0.931 45 H 0.086 0.914 46 H 0.072 0.928 47 H 0.099 0.901 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -22.310 -1.610 17.220 28.228 hybrid contribution -2.039 0.660 -1.282 2.497 sum -24.349 -0.950 15.938 29.117 Atomic orbital electron populations 1.21828 0.74162 1.04797 1.03567 1.45965 1.08953 1.06728 1.67649 1.25979 0.85829 0.94785 0.98149 1.77071 1.18130 0.91964 1.22633 1.49052 1.06235 1.03149 1.68729 1.21182 0.83322 0.93625 0.96148 1.22057 0.97321 1.01626 0.99359 1.20192 0.84628 0.80305 0.84077 1.90708 1.63839 1.56577 1.31151 1.46132 1.29723 1.52535 1.08381 1.21008 0.84342 0.91909 0.98453 1.21920 0.96799 0.98690 0.99323 1.22173 1.01958 0.98207 0.94889 1.20211 0.95397 0.90163 0.86972 1.42792 1.06413 1.54287 1.35654 1.19080 0.86078 1.20449 1.11457 0.89231 1.24680 0.96212 0.99676 0.98736 1.69700 1.23004 1.35723 1.29828 0.86544 0.84007 0.78355 0.79553 1.21198 1.21825 1.20411 1.21856 0.99121 0.97859 0.97828 1.21787 1.02694 0.97866 0.93697 1.16817 0.82179 0.85136 0.81741 1.91101 1.77726 1.15193 1.58637 0.90855 0.89246 0.89387 0.75262 0.87813 0.87666 0.88467 0.87891 0.76343 0.89742 0.92071 0.91195 0.91623 0.92992 0.92636 0.80839 0.93100 0.91389 0.92848 0.90126 0.91721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.33 11.05 59.85 0.66 0.99 16 2 N -0.56 -4.09 3.14 -130.10 -0.41 -4.49 16 3 C 0.25 1.41 12.66 -89.12 -1.13 0.28 16 4 N -0.28 -2.58 12.53 29.87 0.37 -2.21 16 5 N -0.45 -4.92 3.63 -65.12 -0.24 -5.16 16 6 C 0.18 1.92 5.68 -4.04 -0.02 1.90 16 7 C -0.16 -1.64 6.02 -27.88 -0.17 -1.81 16 8 C 0.52 6.45 7.79 -10.98 -0.09 6.37 16 9 O -0.54 -8.37 15.65 5.56 0.09 -8.28 16 10 N -0.72 -8.28 4.23 -53.81 -0.23 -8.51 16 11 C 0.15 1.81 2.78 -67.93 -0.19 1.62 16 12 C -0.13 -1.80 5.60 -26.73 -0.15 -1.95 16 13 C -0.13 -2.22 5.34 -26.73 -0.14 -2.36 16 14 C 0.18 3.28 2.77 -67.93 -0.19 3.09 16 15 N -0.75 -17.09 4.92 -53.42 -0.26 -17.35 16 16 C -0.24 -6.67 10.41 -15.06 -0.16 -6.82 16 17 H 0.09 2.67 8.06 -52.49 -0.42 2.25 16 18 C 0.00 0.07 5.50 -17.43 -0.10 -0.02 16 19 N -0.93 -29.22 13.97 55.49 0.78 -28.45 16 20 Si 0.88 21.84 27.73 -169.99 -4.71 17.13 16 21 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 22 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 23 H -0.28 -6.40 6.52 56.52 0.37 -6.03 16 24 C -0.13 -1.79 5.22 -26.73 -0.14 -1.93 16 25 C -0.12 -1.39 5.61 -26.73 -0.15 -1.54 16 26 C 0.64 7.43 8.60 -86.73 -0.75 6.68 16 27 O -0.55 -8.24 17.71 5.09 0.09 -8.15 16 28 H 0.07 0.17 8.14 -51.93 -0.42 -0.25 16 29 H 0.09 0.01 8.14 -51.93 -0.42 -0.41 16 30 H 0.09 0.39 8.08 -51.93 -0.42 -0.03 16 31 H 0.23 0.03 8.06 -52.49 -0.42 -0.39 16 32 H 0.10 1.19 8.07 -51.93 -0.42 0.77 16 33 H 0.11 1.12 8.10 -51.93 -0.42 0.70 16 34 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.40 4.14 6.87 -40.82 -0.28 3.86 16 37 H 0.08 1.08 7.58 -51.93 -0.39 0.69 16 38 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 41 H 0.05 0.87 7.60 -51.93 -0.39 0.47 16 42 H 0.06 1.06 8.08 -51.93 -0.42 0.65 16 43 H 0.36 8.04 5.66 -40.82 -0.23 7.81 16 44 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 45 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 46 H 0.05 0.70 6.51 -51.93 -0.34 0.36 16 47 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 48 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 391.67 15.07 5.90 5.90 Total: -1.00 -37.75 391.67 -8.88 -46.63 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: -7.56 Total: 8.46 kcal Atomic # 6 Polarization: 7.19 SS G_CDS: -2.70 Total: 4.48 kcal Atomic # 7 Polarization: -66.19 SS G_CDS: 0.01 Total: -66.18 kcal Atomic # 8 Polarization: -16.60 SS G_CDS: 0.18 Total: -16.43 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.71 Total: 17.13 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -37.75 -8.88 -46.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317218554.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.380 kcal (2) G-P(sol) polarization free energy of solvation -37.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds