Wall clock time and date at job start Tue Mar 31 2020 21:10:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.37355 * 125.83186 * 2 1 4 4 N 1.29406 * 108.82813 * 179.77681 * 3 2 1 5 5 N 1.40174 * 108.14018 * 0.38991 * 4 3 2 6 6 C 1.46499 * 126.34874 * 179.87835 * 5 4 3 7 7 C 1.53000 * 109.46840 * 269.68250 * 6 5 4 8 8 C 1.50703 * 109.46912 * 180.02562 * 7 6 5 9 9 O 1.21278 * 119.99985 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00161 * 180.02562 * 8 7 6 11 11 C 1.46496 * 120.00271 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.46916 * 274.99861 * 11 10 8 13 13 C 1.53003 * 109.47007 * 299.99560 * 12 11 10 14 14 C 1.53003 * 109.47178 * 300.00465 * 13 12 11 15 15 N 1.46501 * 109.46754 * 179.97438 * 14 13 12 16 16 C 1.36945 * 120.00025 * 85.00064 * 15 14 13 17 17 H 1.08001 * 119.99435 * 359.97438 * 16 15 14 18 18 C 1.38805 * 120.00010 * 179.97438 * 16 15 14 19 19 N 1.31621 * 120.00224 * 179.97438 * 18 16 15 20 20 Si 1.86797 * 120.00213 * 359.97438 * 18 16 15 21 21 H 1.48502 * 109.47302 * 89.99832 * 20 18 16 22 22 H 1.48502 * 109.47208 * 210.00258 * 20 18 16 23 23 H 1.48504 * 109.47311 * 329.99979 * 20 18 16 24 24 C 1.52995 * 109.47075 * 59.99932 * 14 13 12 25 25 C 1.52997 * 109.47387 * 154.99671 * 11 10 8 26 26 C 1.34820 * 125.83042 * 180.02562 * 2 1 3 27 27 O 1.21815 * 126.30194 * 359.97195 * 26 2 1 28 28 H 1.08998 * 109.46928 * 269.96961 * 1 2 3 29 29 H 1.09003 * 109.47291 * 29.96604 * 1 2 3 30 30 H 1.09000 * 109.47380 * 149.97554 * 1 2 3 31 31 H 1.07997 * 125.58598 * 0.02948 * 3 2 1 32 32 H 1.09001 * 109.46813 * 149.68524 * 6 5 4 33 33 H 1.08992 * 109.47397 * 29.68585 * 6 5 4 34 34 H 1.09002 * 109.47398 * 300.00326 * 7 6 5 35 35 H 1.09001 * 109.47194 * 60.00507 * 7 6 5 36 36 H 0.97005 * 119.99463 * 359.97438 * 10 8 7 37 37 H 1.09005 * 109.47129 * 34.99449 * 11 10 8 38 38 H 1.08991 * 109.47341 * 59.99644 * 12 11 10 39 39 H 1.09000 * 109.46953 * 179.97438 * 12 11 10 40 40 H 1.08999 * 109.47062 * 180.02562 * 13 12 11 41 41 H 1.09000 * 109.46949 * 60.00383 * 13 12 11 42 42 H 1.09004 * 109.46709 * 299.99510 * 14 13 12 43 43 H 0.96999 * 120.00579 * 264.99783 * 15 14 13 44 44 H 0.96999 * 120.00581 * 179.97438 * 19 18 16 45 45 H 1.09007 * 109.46800 * 179.97438 * 24 14 13 46 46 H 1.09000 * 109.47243 * 59.99964 * 24 14 13 47 47 H 1.09000 * 109.47324 * 179.97438 * 25 11 10 48 48 H 1.08999 * 109.47176 * 299.99963 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2691 1.1136 0.0000 4 7 3.5066 0.7352 0.0048 5 7 3.5344 -0.6663 -0.0010 6 6 4.7313 -1.5110 -0.0009 7 6 5.1477 -1.8055 -1.4434 8 6 6.3786 -2.6750 -1.4433 9 8 6.8743 -3.0242 -0.3930 10 7 6.9293 -3.0636 -2.6105 11 6 8.1255 -3.9093 -2.6105 12 6 9.3714 -3.0302 -2.4841 13 6 9.4329 -2.0599 -3.6655 14 6 9.4977 -2.8518 -4.9731 15 7 9.5560 -1.9226 -6.1042 16 6 10.7600 -1.4100 -6.5080 17 1 11.6665 -1.6904 -5.9922 18 6 10.8152 -0.5300 -7.5800 19 7 11.9723 -0.0369 -7.9678 20 14 9.2474 -0.0456 -8.4725 21 1 8.6660 1.1616 -7.8321 22 1 9.5582 0.2494 -9.8944 23 1 8.2715 -1.1626 -8.4006 24 6 8.2518 -3.7307 -5.0993 25 6 8.1904 -4.7011 -3.9180 26 6 2.2542 -1.0931 -0.0005 27 8 1.8805 -2.2525 -0.0005 28 1 -0.3633 -0.0005 1.0277 29 1 -0.3634 0.8903 -0.5133 30 1 -0.3634 -0.8897 -0.5142 31 1 1.9249 2.1373 0.0005 32 1 4.5150 -2.4475 0.5132 33 1 5.5414 -0.9933 0.5126 34 1 4.3376 -2.3233 -1.9570 35 1 5.3640 -0.8690 -1.9576 36 1 6.5330 -2.7839 -3.4506 37 1 8.0817 -4.6006 -1.7688 38 1 9.3252 -2.4661 -1.5527 39 1 10.2615 -3.6595 -2.4836 40 1 10.3207 -1.4340 -3.5757 41 1 8.5428 -1.4307 -3.6655 42 1 10.3879 -3.4809 -4.9730 43 1 8.7418 -1.6704 -6.5673 44 1 12.0110 0.5777 -8.7172 45 1 8.2979 -4.2945 -6.0311 46 1 7.3618 -3.1015 -5.0993 47 1 9.0807 -5.3299 -3.9181 48 1 7.3028 -5.3273 -4.0080 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317218554.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:51 Heat of formation + Delta-G solvation = -11.547670 kcal Electronic energy + Delta-G solvation = -29223.249376 eV Core-core repulsion = 25121.276170 eV Total energy + Delta-G solvation = -4101.973206 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.41466 -41.29490 -39.40222 -38.42650 -36.75254 -36.33619 -34.37007 -33.81524 -32.80240 -31.71218 -30.99823 -29.49774 -28.26797 -25.96065 -25.17876 -23.57660 -23.37534 -22.46009 -22.23092 -21.66905 -20.40304 -19.43813 -18.90500 -18.06946 -17.71309 -17.17297 -16.89199 -16.83928 -16.64651 -16.46604 -16.14594 -15.65014 -15.31625 -15.06487 -14.89533 -14.71948 -14.42215 -14.31913 -14.18790 -13.89704 -13.64696 -13.50095 -13.29055 -13.21572 -13.11903 -12.89465 -12.88100 -12.83706 -12.39916 -12.19217 -12.05703 -11.81861 -11.72264 -11.40750 -11.39187 -11.17300 -11.13448 -10.88265 -10.84218 -10.02213 -9.67484 -9.27806 -8.00358 -5.33412 0.72426 1.07802 1.37802 1.42395 1.49773 1.53631 1.58610 2.11189 2.37301 2.50188 3.30817 3.44247 3.53285 3.62587 3.78316 3.87957 3.92603 3.97585 4.10871 4.21192 4.27197 4.28952 4.33706 4.37144 4.52902 4.58775 4.63074 4.64704 4.66428 4.68972 4.81182 4.81626 4.94585 5.00884 5.07784 5.10369 5.16233 5.24363 5.29879 5.48286 5.57335 5.61780 5.67993 5.80417 6.24134 6.51804 6.62159 6.92425 7.10829 7.20178 7.87530 8.06904 9.21540 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.012496 B = 0.002469 C = 0.002205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2240.205007 B =11337.636475 C =12693.898183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.559 5.559 3 C 0.279 3.721 4 N -0.318 5.318 5 N -0.458 5.458 6 C 0.180 3.820 7 C -0.148 4.148 8 C 0.523 3.477 9 O -0.577 6.577 10 N -0.710 5.710 11 C 0.152 3.848 12 C -0.120 4.120 13 C -0.121 4.121 14 C 0.175 3.825 15 N -0.751 5.751 16 C -0.226 4.226 17 H 0.051 0.949 18 C -0.071 4.071 19 N -0.988 5.988 20 Si 0.959 3.041 21 H -0.280 1.280 22 H -0.299 1.299 23 H -0.246 1.246 24 C -0.119 4.119 25 C -0.111 4.111 26 C 0.625 3.375 27 O -0.599 6.599 28 H 0.084 0.916 29 H 0.131 0.869 30 H 0.072 0.928 31 H 0.288 0.712 32 H 0.088 0.912 33 H 0.101 0.899 34 H 0.105 0.895 35 H 0.113 0.887 36 H 0.410 0.590 37 H 0.086 0.914 38 H 0.051 0.949 39 H 0.074 0.926 40 H 0.028 0.972 41 H 0.056 0.944 42 H 0.039 0.961 43 H 0.365 0.635 44 H 0.256 0.744 45 H 0.069 0.931 46 H 0.069 0.931 47 H 0.087 0.913 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.453 -0.290 16.424 31.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.286 5.286 3 C -0.018 4.018 4 N -0.139 5.139 5 N -0.278 5.278 6 C 0.058 3.942 7 C -0.189 4.189 8 C 0.309 3.691 9 O -0.457 6.457 10 N -0.362 5.362 11 C 0.047 3.953 12 C -0.159 4.159 13 C -0.161 4.161 14 C 0.067 3.933 15 N -0.394 5.394 16 C -0.357 4.357 17 H 0.069 0.931 18 C -0.261 4.261 19 N -0.639 5.639 20 Si 0.786 3.214 21 H -0.206 1.206 22 H -0.226 1.226 23 H -0.171 1.171 24 C -0.157 4.157 25 C -0.149 4.149 26 C 0.324 3.676 27 O -0.476 6.476 28 H 0.103 0.897 29 H 0.149 0.851 30 H 0.091 0.909 31 H 0.303 0.697 32 H 0.107 0.893 33 H 0.119 0.881 34 H 0.123 0.877 35 H 0.131 0.869 36 H 0.247 0.753 37 H 0.104 0.896 38 H 0.070 0.930 39 H 0.093 0.907 40 H 0.047 0.953 41 H 0.075 0.925 42 H 0.057 0.943 43 H 0.199 0.801 44 H 0.065 0.935 45 H 0.088 0.912 46 H 0.088 0.912 47 H 0.106 0.894 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -26.125 -1.090 17.155 31.273 hybrid contribution -0.841 0.540 -1.137 1.514 sum -26.966 -0.550 16.018 31.369 Atomic orbital electron populations 1.22173 0.71810 1.06119 1.04803 1.46197 1.10235 1.05949 1.66250 1.27136 0.84423 0.96134 0.94156 1.77097 1.20386 0.90606 1.25795 1.49045 1.05908 1.04132 1.68670 1.21030 0.83499 0.93184 0.96459 1.21930 0.96334 1.01544 0.99052 1.20525 0.84883 0.79970 0.83676 1.90698 1.64874 1.57830 1.32347 1.46082 1.29292 1.52152 1.08637 1.20930 0.83516 0.91588 0.99246 1.21831 0.98412 0.98315 0.97353 1.21977 1.00376 0.98219 0.95523 1.20453 0.97239 0.89837 0.85760 1.42790 1.04783 1.54876 1.36937 1.19010 0.86762 1.19513 1.10403 0.93070 1.25560 0.99993 1.00352 1.00242 1.69901 1.25938 1.37190 1.30839 0.85353 0.79955 0.78878 0.77226 1.20623 1.22638 1.17056 1.21754 0.97114 0.97730 0.99141 1.21736 1.04394 0.97277 0.91526 1.17130 0.82846 0.85537 0.82056 1.91047 1.78531 1.17218 1.60829 0.89707 0.85067 0.90920 0.69726 0.89325 0.88106 0.87686 0.86911 0.75284 0.89580 0.93025 0.90697 0.95264 0.92541 0.94279 0.80131 0.93500 0.91214 0.91199 0.89432 0.89054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.36 11.05 127.77 1.41 1.77 16 2 N -0.56 -6.82 3.14 -683.68 -2.15 -8.97 16 3 C 0.28 2.17 12.66 179.82 2.28 4.45 16 4 N -0.32 -5.34 12.53 -59.42 -0.74 -6.08 16 5 N -0.46 -9.77 3.63 -478.02 -1.73 -11.50 16 6 C 0.18 3.91 5.68 86.38 0.49 4.40 16 7 C -0.15 -2.84 6.02 29.85 0.18 -2.66 16 8 C 0.52 12.34 7.79 87.66 0.68 13.02 16 9 O -0.58 -17.58 15.65 -3.02 -0.05 -17.63 16 10 N -0.71 -14.89 4.23 -442.54 -1.87 -16.76 16 11 C 0.15 3.42 2.78 44.99 0.13 3.54 16 12 C -0.12 -3.29 5.60 30.60 0.17 -3.12 16 13 C -0.12 -4.04 5.34 30.60 0.16 -3.88 16 14 C 0.17 6.16 2.77 44.99 0.12 6.28 16 15 N -0.75 -33.64 4.92 -322.94 -1.59 -35.23 16 16 C -0.23 -12.76 10.41 84.03 0.87 -11.89 16 17 H 0.05 3.22 8.06 -2.91 -0.02 3.20 16 18 C -0.07 -4.15 5.50 84.86 0.47 -3.69 16 19 N -0.99 -63.70 13.97 21.65 0.30 -63.40 16 20 Si 0.96 44.82 27.73 68.60 1.90 46.72 16 21 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 22 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 23 H -0.25 -10.11 6.52 99.48 0.65 -9.46 16 24 C -0.12 -2.98 5.22 30.59 0.16 -2.82 16 25 C -0.11 -2.18 5.61 30.59 0.17 -2.01 16 26 C 0.63 14.17 8.60 178.99 1.54 15.71 16 27 O -0.60 -18.21 17.71 -4.72 -0.08 -18.29 16 28 H 0.08 0.17 8.14 -2.39 -0.02 0.15 16 29 H 0.13 -0.57 8.14 -2.39 -0.02 -0.59 16 30 H 0.07 0.55 8.08 -2.39 -0.02 0.54 16 31 H 0.29 -1.54 8.06 -2.91 -0.02 -1.57 16 32 H 0.09 2.15 8.07 -2.39 -0.02 2.13 16 33 H 0.10 2.22 8.10 -2.39 -0.02 2.20 16 34 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.11 1.96 8.14 -2.39 -0.02 1.95 16 36 H 0.41 7.19 6.87 -92.70 -0.64 6.55 16 37 H 0.09 2.02 7.58 -2.38 -0.02 2.00 16 38 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 40 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.06 1.82 7.60 -2.39 -0.02 1.80 16 42 H 0.04 1.51 8.08 -2.39 -0.02 1.49 16 43 H 0.37 15.44 5.66 -92.71 -0.52 14.91 16 44 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 45 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 46 H 0.07 1.54 6.51 -2.39 -0.02 1.53 16 47 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 48 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -87.21 391.67 2.58 -84.62 By element: Atomic # 1 Polarization: 27.64 SS G_CDS: -0.24 Total: 27.40 kcal Atomic # 6 Polarization: 10.29 SS G_CDS: 8.84 Total: 19.13 kcal Atomic # 7 Polarization: -134.16 SS G_CDS: -7.79 Total: -141.95 kcal Atomic # 8 Polarization: -35.79 SS G_CDS: -0.13 Total: -35.92 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 1.90 Total: 46.72 kcal Total: -87.21 2.58 -84.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317218554.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.076 kcal (2) G-P(sol) polarization free energy of solvation -87.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds