Wall clock time and date at job start Tue Mar 31 2020 20:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46502 * 109.47283 * 2 1 4 4 C 1.36929 * 120.00186 * 275.31374 * 3 2 1 5 5 H 1.08001 * 120.00328 * 37.58050 * 4 3 2 6 6 C 1.38818 * 120.00319 * 217.57923 * 4 3 2 7 7 N 1.31621 * 119.99504 * 21.41897 * 6 4 3 8 8 Si 1.86797 * 120.00148 * 201.42557 * 6 4 3 9 9 H 1.48494 * 109.47336 * 59.99709 * 8 6 4 10 10 H 1.48498 * 109.46653 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47084 * 299.99348 * 8 6 4 12 12 C 1.46500 * 119.99833 * 95.31280 * 3 2 1 13 13 C 1.52997 * 109.47244 * 270.00220 * 12 3 2 14 14 N 1.46504 * 109.47582 * 179.97438 * 13 12 3 15 15 C 1.34773 * 119.99990 * 179.97438 * 14 13 12 16 16 O 1.21283 * 120.00334 * 0.02562 * 15 14 13 17 17 C 1.50700 * 119.99775 * 179.97438 * 15 14 13 18 18 N 1.46495 * 109.47345 * 180.02562 * 17 15 14 19 19 N 1.40309 * 126.32642 * 270.02986 * 18 17 15 20 20 C 1.28872 * 108.12290 * 180.35036 * 19 18 17 21 21 N 1.38118 * 108.89246 * 0.80119 * 20 19 18 22 22 C 1.34313 * 108.29355 * 358.29213 * 21 20 19 23 23 O 1.21818 * 126.32020 * 181.85244 * 22 21 20 24 24 C 1.46719 * 124.21586 * 177.64502 * 21 20 19 25 25 C 1.53282 * 108.65989 * 19.14000 * 24 21 20 26 26 C 1.53244 * 109.34776 * 308.24609 * 25 24 21 27 27 C 1.51116 * 127.46628 * 180.91781 * 20 19 18 28 28 H 1.08997 * 109.47213 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46986 * 299.99345 * 1 2 3 30 30 H 1.08992 * 109.47524 * 59.99439 * 1 2 3 31 31 H 1.09005 * 109.46986 * 240.00655 * 2 1 3 32 32 H 1.09001 * 109.47676 * 120.00385 * 2 1 3 33 33 H 0.97001 * 119.99667 * 180.02562 * 7 6 4 34 34 H 1.08994 * 109.47334 * 150.00171 * 12 3 2 35 35 H 1.09007 * 109.47274 * 30.00117 * 12 3 2 36 36 H 1.09007 * 109.47164 * 59.99932 * 13 12 3 37 37 H 1.09001 * 109.47424 * 300.00587 * 13 12 3 38 38 H 0.96994 * 119.99418 * 0.02562 * 14 13 12 39 39 H 1.09007 * 109.46737 * 60.00382 * 17 15 14 40 40 H 1.08999 * 109.47213 * 300.00323 * 17 15 14 41 41 H 1.09004 * 109.60275 * 259.38593 * 24 21 20 42 42 H 1.09001 * 109.60308 * 138.89457 * 24 21 20 43 43 H 1.09000 * 109.49096 * 188.28879 * 25 24 21 44 44 H 1.08991 * 109.49546 * 68.20707 * 25 24 21 45 45 H 1.08999 * 109.54787 * 310.91936 * 26 25 24 46 46 H 1.08999 * 109.62412 * 190.68065 * 26 25 24 47 47 H 1.09002 * 109.74725 * 78.16119 * 27 20 19 48 48 H 1.09000 * 109.75084 * 317.48215 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1430 2.0633 -1.1807 5 1 1.4104 1.9280 -1.9626 6 6 3.2111 2.9290 -1.3728 7 7 4.3026 2.7981 -0.6490 8 14 3.0993 4.2796 -2.6584 9 1 1.9627 5.1786 -2.3343 10 1 4.3618 5.0614 -2.6660 11 1 2.8844 3.6727 -3.9966 12 6 2.3733 2.0326 1.2633 13 6 1.1427 2.7381 1.8367 14 7 1.4974 3.3891 3.1003 15 6 0.5650 4.0764 3.7893 16 8 -0.5678 4.1557 3.3634 17 6 0.9298 4.7455 5.0894 18 7 -0.2484 5.4211 5.6383 19 7 -0.6396 6.7450 5.3874 20 6 -1.7189 6.9770 6.0523 21 7 -2.0583 5.8429 6.7638 22 6 -1.1615 4.8838 6.4812 23 8 -1.1682 3.7420 6.9058 24 6 -3.2049 5.7528 7.6748 25 6 -4.1850 6.8837 7.3429 26 6 -3.4314 8.2178 7.3192 27 6 -2.5224 8.2564 6.0833 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8898 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 5.0489 3.4031 -0.7830 34 1 3.1617 2.7640 1.0860 35 1 2.7256 1.2832 1.9721 36 1 0.3542 2.0067 2.0140 37 1 0.7903 3.4875 1.1279 38 1 2.4035 3.3259 3.4407 39 1 1.7189 5.4765 4.9129 40 1 1.2812 3.9955 5.7980 41 1 -2.8628 5.8556 8.7046 42 1 -3.6998 4.7902 7.5456 43 1 -4.9671 6.9213 8.1011 44 1 -4.6331 6.7017 6.3662 45 1 -2.8257 8.3106 8.2206 46 1 -4.1450 9.0405 7.2729 47 1 -3.1299 8.3319 5.1814 48 1 -1.8502 9.1121 6.1471 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317488681.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:24 Heat of formation + Delta-G solvation = 24.521271 kcal Electronic energy + Delta-G solvation = -29490.137779 eV Core-core repulsion = 25389.728640 eV Total energy + Delta-G solvation = -4100.409139 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.64224 -39.31055 -37.80001 -36.93649 -36.27973 -34.07753 -33.68112 -32.69025 -31.87816 -29.95058 -29.15353 -28.29109 -27.03964 -24.77123 -24.06894 -22.95313 -22.19530 -21.48792 -20.45315 -20.06849 -20.00411 -17.54119 -17.47154 -16.71266 -16.36006 -16.20534 -15.94219 -15.19262 -15.11937 -14.87583 -14.69739 -14.64763 -14.52522 -13.95583 -13.74847 -13.59545 -13.43476 -13.10851 -12.93471 -12.37178 -12.34210 -12.19017 -12.06799 -11.87673 -11.61102 -11.50180 -11.48273 -11.43459 -11.11072 -10.74430 -10.63309 -10.52484 -10.42122 -10.25942 -10.07763 -9.87443 -9.81219 -9.48985 -8.57982 -8.54299 -8.44572 -6.61977 -5.83319 -3.41858 1.56978 1.83451 2.62761 2.79699 2.89879 3.36334 3.41874 3.46326 3.59046 3.93232 4.12339 4.20339 4.31148 4.46911 4.63445 4.81442 4.89717 4.95247 5.02396 5.07102 5.20236 5.23579 5.27800 5.28573 5.35492 5.49043 5.55496 5.64186 5.76718 5.99365 6.01596 6.13218 6.18359 6.39388 6.40536 6.44262 6.52728 6.70627 6.86455 6.92803 7.03068 7.18162 7.54192 7.55224 7.80446 7.86755 8.00604 8.48017 8.54382 9.14988 9.76879 10.35186 11.16856 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.016236 B = 0.002471 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.197922 B =11326.919025 C =12071.048672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.141 3.859 3 N -0.580 5.580 4 C -0.261 4.261 5 H 0.061 0.939 6 C 0.013 3.987 7 N -0.888 5.888 8 Si 0.897 3.103 9 H -0.282 1.282 10 H -0.290 1.290 11 H -0.280 1.280 12 C 0.138 3.862 13 C 0.099 3.901 14 N -0.716 5.716 15 C 0.490 3.510 16 O -0.534 6.534 17 C 0.142 3.858 18 N -0.437 5.437 19 N -0.265 5.265 20 C 0.273 3.727 21 N -0.556 5.556 22 C 0.657 3.343 23 O -0.554 6.554 24 C 0.132 3.868 25 C -0.138 4.138 26 C -0.123 4.123 27 C -0.040 4.040 28 H 0.037 0.963 29 H 0.044 0.956 30 H 0.050 0.950 31 H 0.046 0.954 32 H 0.035 0.965 33 H 0.255 0.745 34 H 0.099 0.901 35 H 0.029 0.971 36 H 0.051 0.949 37 H 0.064 0.936 38 H 0.399 0.601 39 H 0.124 0.876 40 H 0.123 0.877 41 H 0.081 0.919 42 H 0.091 0.909 43 H 0.092 0.908 44 H 0.078 0.922 45 H 0.074 0.926 46 H 0.087 0.913 47 H 0.103 0.897 48 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.049 11.406 19.668 25.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.015 3.985 3 N -0.300 5.300 4 C -0.391 4.391 5 H 0.078 0.922 6 C -0.187 4.187 7 N -0.530 5.530 8 Si 0.727 3.273 9 H -0.208 1.208 10 H -0.215 1.215 11 H -0.206 1.206 12 C 0.010 3.990 13 C -0.026 4.026 14 N -0.368 5.368 15 C 0.273 3.727 16 O -0.411 6.411 17 C 0.017 3.983 18 N -0.256 5.256 19 N -0.086 5.086 20 C -0.006 4.006 21 N -0.286 5.286 22 C 0.357 3.643 23 O -0.427 6.427 24 C 0.010 3.990 25 C -0.176 4.176 26 C -0.162 4.162 27 C -0.079 4.079 28 H 0.056 0.944 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.053 0.947 33 H 0.065 0.935 34 H 0.117 0.883 35 H 0.048 0.952 36 H 0.069 0.931 37 H 0.082 0.918 38 H 0.232 0.768 39 H 0.142 0.858 40 H 0.141 0.859 41 H 0.099 0.901 42 H 0.109 0.891 43 H 0.111 0.889 44 H 0.097 0.903 45 H 0.093 0.907 46 H 0.106 0.894 47 H 0.121 0.879 48 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -11.923 10.990 18.960 24.948 hybrid contribution -0.100 0.289 -0.148 0.339 sum -12.022 11.278 18.812 25.012 Atomic orbital electron populations 1.22389 0.99944 0.99092 1.01378 1.20880 0.91737 0.86961 0.98911 1.43606 1.76037 1.08296 1.02082 1.18978 1.04747 1.21359 0.93971 0.92163 1.25185 0.94139 1.01204 0.98170 1.69988 1.03134 1.37319 1.42535 0.86457 0.76973 0.82308 0.81605 1.20795 1.21549 1.20620 1.21062 0.94496 0.96976 0.86439 1.22486 1.01162 0.96488 0.82471 1.46049 1.12961 1.53137 1.24648 1.20809 0.86093 0.79650 0.86103 1.90709 1.20478 1.60451 1.69421 1.21280 0.84725 0.97612 0.94724 1.48345 1.24844 1.08751 1.43670 1.76747 1.12979 0.97084 1.21783 1.24261 0.93371 0.91210 0.91747 1.46035 1.27802 1.12191 1.42599 1.16511 0.81177 0.84645 0.81988 1.91073 1.76438 1.14856 1.60382 1.21770 0.84116 1.01124 0.91971 1.21990 0.97829 0.93689 1.04057 1.21715 0.98781 0.97967 0.97692 1.20488 0.96802 0.89993 1.00642 0.94433 0.93709 0.93127 0.93550 0.94696 0.93460 0.88337 0.95222 0.93050 0.91768 0.76788 0.85781 0.85934 0.90075 0.89060 0.88911 0.90306 0.90740 0.89426 0.87906 0.87662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.26 10.21 37.16 0.38 -2.88 16 2 C 0.14 3.04 6.44 -4.04 -0.03 3.01 16 3 N -0.58 -14.34 2.43 -173.24 -0.42 -14.76 16 4 C -0.26 -7.09 9.45 -15.06 -0.14 -7.24 16 5 H 0.06 1.65 7.92 -52.49 -0.42 1.24 16 6 C 0.01 0.36 4.95 -17.43 -0.09 0.28 16 7 N -0.89 -24.83 11.47 55.49 0.64 -24.19 16 8 Si 0.90 21.59 29.60 -169.99 -5.03 16.56 16 9 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 C 0.14 3.11 5.45 -4.04 -0.02 3.09 16 13 C 0.10 2.09 6.00 -4.04 -0.02 2.06 16 14 N -0.72 -12.31 5.56 -60.29 -0.33 -12.65 16 15 C 0.49 8.83 7.90 -10.99 -0.09 8.74 16 16 O -0.53 -12.14 16.43 5.56 0.09 -12.04 16 17 C 0.14 1.95 6.87 -5.20 -0.04 1.91 16 18 N -0.44 -6.85 3.13 -66.32 -0.21 -7.06 16 19 N -0.26 -3.80 12.51 33.15 0.41 -3.38 16 20 C 0.27 3.06 7.73 -153.65 -1.19 1.87 16 21 N -0.56 -6.81 3.14 -117.44 -0.37 -7.17 16 22 C 0.66 10.79 8.65 -86.78 -0.75 10.03 16 23 O -0.55 -10.65 17.84 5.08 0.09 -10.56 16 24 C 0.13 1.03 6.87 -3.78 -0.03 1.01 16 25 C -0.14 -0.62 5.94 -26.46 -0.16 -0.77 16 26 C -0.12 -0.44 5.96 -26.37 -0.16 -0.60 16 27 C -0.04 -0.23 6.32 -27.44 -0.17 -0.41 16 28 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.04 0.88 6.64 -51.93 -0.34 0.54 16 30 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.05 1.01 8.08 -51.93 -0.42 0.59 16 32 H 0.03 0.70 7.83 -51.93 -0.41 0.29 16 33 H 0.26 6.90 8.31 -40.82 -0.34 6.57 16 34 H 0.10 2.46 5.52 -51.93 -0.29 2.18 16 35 H 0.03 0.62 7.86 -51.92 -0.41 0.21 16 36 H 0.05 1.13 6.64 -51.92 -0.34 0.78 16 37 H 0.06 1.55 8.14 -51.93 -0.42 1.12 16 38 H 0.40 5.50 8.47 -40.82 -0.35 5.16 16 39 H 0.12 1.31 8.14 -51.92 -0.42 0.89 16 40 H 0.12 1.41 8.12 -51.93 -0.42 0.99 16 41 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 44 H 0.08 0.42 8.10 -51.93 -0.42 0.00 16 45 H 0.07 0.26 8.11 -51.93 -0.42 -0.16 16 46 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 47 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 48 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 395.20 15.07 5.96 5.96 Total: -1.00 -37.89 395.20 -9.27 -47.16 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -7.60 Total: 2.04 kcal Atomic # 6 Polarization: 22.61 SS G_CDS: -2.50 Total: 20.11 kcal Atomic # 7 Polarization: -68.93 SS G_CDS: -0.28 Total: -69.21 kcal Atomic # 8 Polarization: -22.79 SS G_CDS: 0.18 Total: -22.61 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.03 Total: 16.56 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -37.89 -9.27 -47.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317488681.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.685 kcal (2) G-P(sol) polarization free energy of solvation -37.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds